SoyBase
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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G13550 | AT | Annotation by Michelle Graham. TAIR10: Ubiquitin-conjugating enzyme family protein | chr3:4423569-4424797 REVERSE LENGTH=182 | SoyBase | E_val: 8.00E-85 | ISS |
| GO:0000085 | GO-bp | Annotation by Michelle Graham. GO Biological Process: G2 phase of mitotic cell cycle | SoyBase | N/A | ISS |
| GO:0009640 | GO-bp | Annotation by Michelle Graham. GO Biological Process: photomorphogenesis | SoyBase | N/A | ISS |
| GO:0010099 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of photomorphogenesis | SoyBase | N/A | ISS |
| GO:0042023 | GO-bp | Annotation by Michelle Graham. GO Biological Process: DNA endoreduplication | SoyBase | N/A | ISS |
| GO:0043161 | GO-bp | Annotation by Michelle Graham. GO Biological Process: proteasomal ubiquitin-dependent protein catabolic process | SoyBase | N/A | ISS |
| GO:0043248 | GO-bp | Annotation by Michelle Graham. GO Biological Process: proteasome assembly | SoyBase | N/A | ISS |
| GO:0051510 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of unidimensional cell growth | SoyBase | N/A | ISS |
| GO:0051788 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to misfolded protein | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0004842 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ubiquitin-protein ligase activity | SoyBase | N/A | ISS |
| GO:0005515 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein binding | SoyBase | N/A | ISS |
| GO:0016881 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: acid-amino acid ligase activity | SoyBase | N/A | ISS |
| KOG0417 | KOG | Ubiquitin-protein ligase | JGI | ISS | |
| PTHR24067 | Panther | UBIQUITIN-CONJUGATING ENZYME E2 | JGI | ISS | |
| PTHR24068 | Panther | FAMILY NOT NAMED | JGI | ISS | |
| PF00179 | PFAM | Ubiquitin-conjugating enzyme | JGI | ISS | |
| UniRef100_G7LHZ4 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Ubiquitin-conjugating enzyme COP10 n=1 Tax=Medicago truncatula RepID=G7LHZ4_MEDTR | SoyBase | E_val: 1.00E-99 | ISS |
| UniRef100_I1KSB4 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1KSB4_SOYBN | SoyBase | E_val: 4.00E-126 | ISS |
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Glyma08g12000 not represented in the dataset |
Glyma08g12000 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.08g113700 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma08g12000.2 sequence type=transcript gene model=Glyma08g12000 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high GAAATAATGGAAAGCAAAATGAGTGGATGAAATGAAACCTTGGTCCCTGCCTTTGTGAGAAGAGGAGAGTGATGATGATATCAGGAGGAGGAGGTGGTGGAGGGAAATCATCGTGGAGTTCATCAACATCGTCATGGGTACCCACAACCTCAGTGTCGGCATCTGGAAAGAGGATTCAGAGGGAAATGGTTGAACTCAACAACGACCCTCCTCCTGATTGCTCTGCTGGCCCCAAGGGCGATAACCTCTATCACTGGATTGCCACCATTATTGGAACCCCAGAAACACCCTACCAAGGTGGCATCTTTTTCCTTGACATCAAATTTCCAATTGATTATCCCTTCAAGCCTCCCGAGGTAGTATTCAAAACACGCATTTACCACTGCAATGTAGACCCTGATGGCCGTGTTAGTATGGGAATATTGAAGGATGATTGGAGTCCAGCACTAACAATTACTAAGGTGCTACTAGAAGTTAGATCAATTATGACAAATCCTGATCCTTCAGTAGAGGCAAACCTTATTATGTGCTTGTTTTGGAATAGAAGCATGTTTTAACAGGAAACCCAGCTAATGCTTTATGTCGTCTGACGCTTTGGATTCAATTAACTCAAGGGGTTGTTTGATTTGAGAATACATTTTCTGCTTTATTTCTTGCTTTTACAAATAATCACACAAATGT
>Glyma08g12000.1 sequence type=CDS gene model=Glyma08g12000 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGATGATATCAGGAGGAGGAGGTGGTGGAGGGAAATCATCGTGGAGTTCATCAACATCGTCATGGGTACCCACAACCTCAGTGTCGGCATCTGGAAAGAGGATTCAGAGGGAAATGGTTGAACTCAACAACGACCCTCCTCCTGATTGCTCTGCTGGCCCCAAGGGCGATAACCTCTATCACTGGATTGCCACCATTATTGGAACCCCAGAAACACCCTACCAAGGTGGCATCTTTTTCCTTGACATCAAATTTCCAATTGATTATCCCTTCAAGCCTCCCGAGGTAGTATTCAAAACACGCATTTACCACTGCAATGTAGACCCTGATGGCCGTGTTAGTATGGGAATATTGAAGGATGATTGGAGTCCAGCACTAACAATTACTAAGGTGCTACTAGAAGTTAGATCAATTATGACAAATCCTGATCCTTATAATGCTGTTGTCCCTGGCATCGCTCATTTGTATTCGGGAGACAGAGCAAAACATGATGATATTGCTGCAGAGTGGACTGTCCGATTTGCCAAGTGA >Glyma08g12000.2 sequence type=CDS gene model=Glyma08g12000 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGATGATATCAGGAGGAGGAGGTGGTGGAGGGAAATCATCGTGGAGTTCATCAACATCGTCATGGGTACCCACAACCTCAGTGTCGGCATCTGGAAAGAGGATTCAGAGGGAAATGGTTGAACTCAACAACGACCCTCCTCCTGATTGCTCTGCTGGCCCCAAGGGCGATAACCTCTATCACTGGATTGCCACCATTATTGGAACCCCAGAAACACCCTACCAAGGTGGCATCTTTTTCCTTGACATCAAATTTCCAATTGATTATCCCTTCAAGCCTCCCGAGGTAGTATTCAAAACACGCATTTACCACTGCAATGTAGACCCTGATGGCCGTGTTAGTATGGGAATATTGAAGGATGATTGGAGTCCAGCACTAACAATTACTAAGGTGCTACTAGAAGTTAGATCAATTATGACAAATCCTGATCCTTCAGTAGAGGCAAACCTTATTATGTGCTTGTTTTGGAATAGAAGCATGTTTTAA
>Glyma08g12000.1 sequence type=predicted peptide gene model=Glyma08g12000 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MMISGGGGGGGKSSWSSSTSSWVPTTSVSASGKRIQREMVELNNDPPPDCSAGPKGDNLYHWIATIIGTPETPYQGGIFFLDIKFPIDYPFKPPEVVFKTRIYHCNVDPDGRVSMGILKDDWSPALTITKVLLEVRSIMTNPDPYNAVVPGIAHLYSGDRAKHDDIAAEWTVRFAK* >Glyma08g12000.2 sequence type=predicted peptide gene model=Glyma08g12000 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MMISGGGGGGGKSSWSSSTSSWVPTTSVSASGKRIQREMVELNNDPPPDCSAGPKGDNLYHWIATIIGTPETPYQGGIFFLDIKFPIDYPFKPPEVVFKTRIYHCNVDPDGRVSMGILKDDWSPALTITKVLLEVRSIMTNPDPSVEANLIMCLFWNRSMF*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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