Glyma08g11931 - SoyBase

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Report for Sequence Feature Glyma08g11931

Feature Type:	gene_model
Chromosome:	Gm08
Start:	8651964
stop:	8656247
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g11931

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G32450	AT	Annotation by Michelle Graham. TAIR10: Pentatricopeptide repeat (PPR) superfamily protein \| chr4:15661092-15662705 FORWARD LENGTH=537	SoyBase	E_val: 7.00E-150	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
PTHR24015	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR24015:SF20	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF01535	PFAM	PPR repeat	JGI		ISS
UniRef100_G7JWJ1	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Pentatricopeptide repeat protein n=1 Tax=Medicago truncatula RepID=G7JWJ1_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI000233813F	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233813F related cluster n=1 Tax=unknown RepID=UPI000233813F	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma08g11931

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma08g11931 not represented in the dataset	Glyma08g11931 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g11931

Paralog	Evidence	Comments
Glyma05g28780	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g11931 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g113100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g11931

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma08g11931

Limit To All Plant Sequences

>Glyma08g11931.2   sequence type=transcript   gene model=Glyma08g11931   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GTCGTTTTCTGATTCTCCTACATCCTCACAAAGATGCAAACCGAGCACTCTTCTCTCGTTTCTCAGCTGCTCCCTTATTGTGATTTATTATGTTAAGTCCCAAATAATGTCTTCTAAGAGAGCCTCATCAGTTACAGTTAGTTGTCTTTTGAAGTTGTGCAAAGGATGTTGCTCACACAAAGGCCTTAGTACATTGAGTGCTGTTAGTACTGCTGCTGAAAGGACAGATTTACAGTTTTCTGGTGGTTATCAAAATGATGATTCTTCAGGTTACCAGCAAAATCGTGTTGGGTTTTATCTGGAAAGCCAAAATAAGGCTGATTCTTATGAGCTTTTGAACAAGCAAAGACCTGATTATGTTTCCCAAGCAAATGCAGGGCAAAATTCTTATGGAGCTGGTCAGATTGCAGATGGAGGTCATATAAATGTGACCCGAAATGTTCACAATAATTTGGTGGGTCACAATGGAAGTGTCAATGGGTACTTTGGTCAAGGCGACATGAAAATGCAACAAAAAGTTGGGGCAGGTGTTGATAATGCATGGGGCTCTGGGATGCATGCAAATCCATTTGTTGAGAAACATGATTGGACACAGGAACCTGGACAAGGGATGCAGTCTCCCAATGCATATAGTTCACCTGGGCCTTTAGAGTCACAGGGAAATCTTAGAGGGGACCTAAATCAAAACATTGATCATTTTCAGCAGCCACAAAATGTTCATTACAAAGGGAGTCATGAAATGCGTCCACAGTACCCAGGTTATGGACAGTCTCAGCAGAGTCTAAAAGATGGTCAATATTTGCCAAATTTGAATACTGCACAAAGATCAGTGGTTGGCTCTCATCTATCAAGTAATGCAAATCCTGATGGCGAATCAGCCAAAGCATCTAATGATAGTCCATATAGAGGTACACTTGAGGAATTAGATAATTTCTGCATTGAGGGTAACGTGAAGGAAGCAGTTGAAGTTTTGGAATTGCTGGAAAAACTAGATATTCCTGTGGATTTGCCCCGATATTTGCAATTAATGCACCAATGTGGGGAGAATAAGTCTCTTGAAGAGGCAAAAAATGTACACAGGCATGCTTTACAACATCTGTCACCTCTCCAAGTCAGCACATATAATAGAATTTTGGAGATGTATTTAGAATGTGGTTCTGTAGATGATGCTCTCAACATTTTCAACAATATGCCAGAGCGCAATTTGACTACTTGGGATACTATGATAACACAGCTTGCTAAGAATGGGTTTGCCGAAGATTCAATTGATCTATTTACTCAATTCAAAAACTTGGGACTGAAACCTGATGGGCAGATGTTCATTGGAGTTCTATTTGCATGTGGTATGCTGGGAGATATTGACGAGGGAATGCAGCACTTTGAATCCATGAACAAGGATTACGGCATTGTACCATCTATGACTCATTTTGTCAGTGTAGTAGACATGATTGGCAGCATTGGGCATCTGGATGAAGCCTTTGAGTTCATTGAAAAGATGCCAATGAAGCCAAGTGCTGATATATGGGAGACTTTGATGAATCTCTGTAGAGTTCATGGGAACACTGGGCTGGGGGATTGTTGTGCTGAACTAGTTGAGCAGCTAGATTCTTCTTGTTTAAATGAGCAATCAAAGGCTGGTCTTGTACCTGTAAAAGCCTCAGATTTGACAAAAGAGAAAGAAAAAAGGACTTTGACAAACAAAAATCTTCTTGAAGTAAGGAGTCGAGTCCGTGAATATCGAGCAGGAGATACTTTTCATCCTGAAAGTGATAAGATATATGCCCTGCTTAGAGGTTTAAAGTCACAAATGAAAGAAGCTGGCTATGTTCCGGAGACAAAATTTGTGTTGCATGACATAGATCAGGAAGGCAAAGAAGAAGCTCTTCTTGCCCACAGCGAGAGACTTGCTATTGCTTATGGTCTCCTTAACAGCCCTGCTCGCGCTCCGATGAGGGTAATTAAGAACCTCCGTGTTTGTGGTGATTGCCATACAGCACTGAAGATTATTTCTAAGCTTGTAGGCAGAGAACTCATTATTCGAGATGCGAAAAGGTTCCACCATTTTAACGATGGACTATGCTCCTGCAGGGATTATTGGTGAACATGAACTTAGATGTATCCTGATTCCTGACTACCAGATGGATTGAATAGAATGGCTGTTGGTAAGTAACCCCTCAAGCCAGCAGATAGGGAAATTGTTCATATATCTCCCGGTCATTAAATTAAAATTGATCTTTATATCCACGAGGAGATTGGAATTTTGTTTAACCAGGCTCTTCCACACTAATAAATCAAGCAGTGGGACGTGCATTCAGGTTGCAGAGGCATTATTCATTGAGTAGTTTTATATAATTGGTTGTTGTAGCTTCCATATAAGATATAAATTATTATTGTCACTCCAGGCAAGGGAAAAGCTTATGTAGTTAATAGACAACATTTTTTTTGAAAGGCAGTTCATAGACAACATTGACATTCAATGGTATAATTTCAGACAACTTTTTTGGATGTCAGAACCTAGTCATTTACCACAATCTTAAAATCCAAATCATCTGAGTTATAGTCTAAACTTGTTTGCCTTTCATTCTTTCTTGCCTCTTCTGTGTCAAAGTTCTTGCTGGTGTTCATAATTGGACGTTTCCTTCTTGC

Coding sequences of Glyma08g11931

Limit To All Plant Sequences

>Glyma08g11931.1   sequence type=CDS   gene model=Glyma08g11931   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCTTCTAAGAGAGCCTCATCAGTTACAGTTAGTTGTCTTTTGAAGTTGTGCAAAGGATGTTGCTCACACAAAGGCCTTAGTACATTGAGTGCTGTTAGTACTGCTGCTGAAAGGACAGATTTACAGTTTTCTGGTGGTTATCAAAATGATGATTCTTCAGGTTACCAGCAAAATCGTGTTGGGTTTTATCTGGAAAGCCAAAATAAGGCTGATTCTTATGAGCTTTTGAACAAGCAAAGACCTGATTATGTTTCCCAAGCAAATGCAGGGCAAAATTCTTATGGAGCTGGTCAGATTGCAGATGGAGGTCATATAAATGTGACCCGAAATGTTCACAATAATTTGGTGGGTCACAATGGAAGTGTCAATGGGTACTTTGGTCAAGGCGACATGAAAATGCAACAAAAAGTTGGGGCAGGTGTTGATAATGCATGGGGCTCTGGGATGCATGCAAATCCATTTGTTGAGAAACATGATTGGACACAGGAACCTGGACAAGGGATGCAGTCTCCCAATGCATATAGTTCACCTGGGCCTTTAGAGTCACAGGGAAATCTTAGAGGGGACCTAAATCAAAACATTGATCATTTTCAGCAGCCACAAAATGTTCATTACAAAGGGAGTCATGAAATGCGTCCACAGTACCCAGGTTATGGACAGTCTCAGCAGAGTCTAAAAGATGGTCAATATTTGCCAAATTTGAATACTGCACAAAGATCAGTGGTTGGCTCTCATCTATCAAGTAATGCAAATCCTGATGGCGAATCAGCCAAAGCATCTAATGATAGTCCATATAGAGGTACACTTGAGGAATTAGATAATTTCTGCATTGAGGGTAACGTGAAGGAAGCAGTTGAAGTTTTGGAATTGCTGGAAAAACTAGATATTCCTGTGGATTTGCCCCGATATTTGCAATTAATGCACCAATGTGGGGAGAATAAGTCTCTTGAAGAGGCAAAAAATGTACACAGGCATGCTTTACAACATCTGTCACCTCTCCAAGTCAGCACATATAATAGAATTTTGGAGATGTATTTAGAATGTGGTTCTGTAGATGATGCTCTCAACATTTTCAACAATATGCCAGAGCGCAATTTGACTACTTGGGATACTATGATAACACAGCTTGCTAAGAATGGGTTTGCCGAAGATTCAATTGATCTATTTACTCAATTCAAAAACTTGGGACTGAAACCTGATGGGCAGATGTTCATTGGAGTTCTATTTGCATGTGGTATGCTGGGAGATATTGACGAGGGAATGCAGCACTTTGAATCCATGAACAAGGATTACGGCATTGTACCATCTATGACTCATTTTGTCAGTGTAGTAGACATGATTGGCAGCATTGGGCATCTGGATGAAGCCTTTGAGTTCATTGAAAAGATGCCAATGAAGCCAAGTGCTGATATATGGGAGACTTTGATGAATCTCTGTAGAGTTCATGGGAACACTGGGCTGGGGGATTGTTGTGCTGAACTAGTTGAGCAGCTAGATTCTTCTTGTTTAAATGAGCAATCAAAGGCTGGTCTTGTACCTGTAAAAGCCTCAGATTTGACAAAAGAGAAAGAAAAAAGGACTTTGACAAACAAAAATCTTCTTGAAGTAAGGAGTCGAGTCCGTGAATATCGAGCAGGAGATACTTTTCATCCTGAAAGTGATAAGATATATGCCCTGCTTAGAGGTTTAAAGTCACAAATGAAAGAAGCTGGCTATGTTCCGGAGACAAAATTTGTGTTGCATGACATAGATCAGGAAGGCAAAGAAGAAGCTCTTCTTGCCCACAGCGAGAGACTTGCTATTGCTTATGGTCTCCTTAACAGCCCTGCTCGCGCTCCGATGAGGGTAATTAAGAACCTCCGTGTTTGTGGTGATTGCCATACAGCACTGAAGATTATTTCTAAGCTTGTAGGCAGAGAACTCATTATTCGAGATGCGAAAAGGTTCCACCATTTTAACGATGGACTATGCTCCTGCAGGGATTATTGGTGA

>Glyma08g11931.2   sequence type=CDS   gene model=Glyma08g11931   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCTTCTAAGAGAGCCTCATCAGTTACAGTTAGTTGTCTTTTGAAGTTGTGCAAAGGATGTTGCTCACACAAAGGCCTTAGTACATTGAGTGCTGTTAGTACTGCTGCTGAAAGGACAGATTTACAGTTTTCTGGTGGTTATCAAAATGATGATTCTTCAGGTTACCAGCAAAATCGTGTTGGGTTTTATCTGGAAAGCCAAAATAAGGCTGATTCTTATGAGCTTTTGAACAAGCAAAGACCTGATTATGTTTCCCAAGCAAATGCAGGGCAAAATTCTTATGGAGCTGGTCAGATTGCAGATGGAGGTCATATAAATGTGACCCGAAATGTTCACAATAATTTGGTGGGTCACAATGGAAGTGTCAATGGGTACTTTGGTCAAGGCGACATGAAAATGCAACAAAAAGTTGGGGCAGGTGTTGATAATGCATGGGGCTCTGGGATGCATGCAAATCCATTTGTTGAGAAACATGATTGGACACAGGAACCTGGACAAGGGATGCAGTCTCCCAATGCATATAGTTCACCTGGGCCTTTAGAGTCACAGGGAAATCTTAGAGGGGACCTAAATCAAAACATTGATCATTTTCAGCAGCCACAAAATGTTCATTACAAAGGGAGTCATGAAATGCGTCCACAGTACCCAGGTTATGGACAGTCTCAGCAGAGTCTAAAAGATGGTCAATATTTGCCAAATTTGAATACTGCACAAAGATCAGTGGTTGGCTCTCATCTATCAAGTAATGCAAATCCTGATGGCGAATCAGCCAAAGCATCTAATGATAGTCCATATAGAGGTACACTTGAGGAATTAGATAATTTCTGCATTGAGGGTAACGTGAAGGAAGCAGTTGAAGTTTTGGAATTGCTGGAAAAACTAGATATTCCTGTGGATTTGCCCCGATATTTGCAATTAATGCACCAATGTGGGGAGAATAAGTCTCTTGAAGAGGCAAAAAATGTACACAGGCATGCTTTACAACATCTGTCACCTCTCCAAGTCAGCACATATAATAGAATTTTGGAGATGTATTTAGAATGTGGTTCTGTAGATGATGCTCTCAACATTTTCAACAATATGCCAGAGCGCAATTTGACTACTTGGGATACTATGATAACACAGCTTGCTAAGAATGGGTTTGCCGAAGATTCAATTGATCTATTTACTCAATTCAAAAACTTGGGACTGAAACCTGATGGGCAGATGTTCATTGGAGTTCTATTTGCATGTGGTATGCTGGGAGATATTGACGAGGGAATGCAGCACTTTGAATCCATGAACAAGGATTACGGCATTGTACCATCTATGACTCATTTTGTCAGTGTAGTAGACATGATTGGCAGCATTGGGCATCTGGATGAAGCCTTTGAGTTCATTGAAAAGATGCCAATGAAGCCAAGTGCTGATATATGGGAGACTTTGATGAATCTCTGTAGAGTTCATGGGAACACTGGGCTGGGGGATTGTTGTGCTGAACTAGTTGAGCAGCTAGATTCTTCTTGTTTAAATGAGCAATCAAAGGCTGGTCTTGTACCTGTAAAAGCCTCAGATTTGACAAAAGAGAAAGAAAAAAGGACTTTGACAAACAAAAATCTTCTTGAAGTAAGGAGTCGAGTCCGTGAATATCGAGCAGGAGATACTTTTCATCCTGAAAGTGATAAGATATATGCCCTGCTTAGAGGTTTAAAGTCACAAATGAAAGAAGCTGGCTATGTTCCGGAGACAAAATTTGTGTTGCATGACATAGATCAGGAAGGCAAAGAAGAAGCTCTTCTTGCCCACAGCGAGAGACTTGCTATTGCTTATGGTCTCCTTAACAGCCCTGCTCGCGCTCCGATGAGGGTAATTAAGAACCTCCGTGTTTGTGGTGATTGCCATACAGCACTGAAGATTATTTCTAAGCTTGTAGGCAGAGAACTCATTATTCGAGATGCGAAAAGGTTCCACCATTTTAACGATGGACTATGCTCCTGCAGGGATTATTGGTGA

Predicted protein sequences of Glyma08g11931

Limit To All Plant Sequences

>Glyma08g11931.1   sequence type=predicted peptide   gene model=Glyma08g11931   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSSKRASSVTVSCLLKLCKGCCSHKGLSTLSAVSTAAERTDLQFSGGYQNDDSSGYQQNRVGFYLESQNKADSYELLNKQRPDYVSQANAGQNSYGAGQIADGGHINVTRNVHNNLVGHNGSVNGYFGQGDMKMQQKVGAGVDNAWGSGMHANPFVEKHDWTQEPGQGMQSPNAYSSPGPLESQGNLRGDLNQNIDHFQQPQNVHYKGSHEMRPQYPGYGQSQQSLKDGQYLPNLNTAQRSVVGSHLSSNANPDGESAKASNDSPYRGTLEELDNFCIEGNVKEAVEVLELLEKLDIPVDLPRYLQLMHQCGENKSLEEAKNVHRHALQHLSPLQVSTYNRILEMYLECGSVDDALNIFNNMPERNLTTWDTMITQLAKNGFAEDSIDLFTQFKNLGLKPDGQMFIGVLFACGMLGDIDEGMQHFESMNKDYGIVPSMTHFVSVVDMIGSIGHLDEAFEFIEKMPMKPSADIWETLMNLCRVHGNTGLGDCCAELVEQLDSSCLNEQSKAGLVPVKASDLTKEKEKRTLTNKNLLEVRSRVREYRAGDTFHPESDKIYALLRGLKSQMKEAGYVPETKFVLHDIDQEGKEEALLAHSERLAIAYGLLNSPARAPMRVIKNLRVCGDCHTALKIISKLVGRELIIRDAKRFHHFNDGLCSCRDYW*

>Glyma08g11931.2   sequence type=predicted peptide   gene model=Glyma08g11931   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSSKRASSVTVSCLLKLCKGCCSHKGLSTLSAVSTAAERTDLQFSGGYQNDDSSGYQQNRVGFYLESQNKADSYELLNKQRPDYVSQANAGQNSYGAGQIADGGHINVTRNVHNNLVGHNGSVNGYFGQGDMKMQQKVGAGVDNAWGSGMHANPFVEKHDWTQEPGQGMQSPNAYSSPGPLESQGNLRGDLNQNIDHFQQPQNVHYKGSHEMRPQYPGYGQSQQSLKDGQYLPNLNTAQRSVVGSHLSSNANPDGESAKASNDSPYRGTLEELDNFCIEGNVKEAVEVLELLEKLDIPVDLPRYLQLMHQCGENKSLEEAKNVHRHALQHLSPLQVSTYNRILEMYLECGSVDDALNIFNNMPERNLTTWDTMITQLAKNGFAEDSIDLFTQFKNLGLKPDGQMFIGVLFACGMLGDIDEGMQHFESMNKDYGIVPSMTHFVSVVDMIGSIGHLDEAFEFIEKMPMKPSADIWETLMNLCRVHGNTGLGDCCAELVEQLDSSCLNEQSKAGLVPVKASDLTKEKEKRTLTNKNLLEVRSRVREYRAGDTFHPESDKIYALLRGLKSQMKEAGYVPETKFVLHDIDQEGKEEALLAHSERLAIAYGLLNSPARAPMRVIKNLRVCGDCHTALKIISKLVGRELIIRDAKRFHHFNDGLCSCRDYW*

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