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Report for Sequence Feature Glyma08g11870

Feature Type:gene_model
Chromosome:Gm08
Start:8629531
stop:8630314
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma08g11870
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G55265AT Annotation by Michelle Graham. TAIR10: Protein of unknown function, DUF538 | chr1:20617326-20617853 FORWARD LENGTH=175 SoyBaseE_val: 2.00E-46ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0005576GO-cc Annotation by Michelle Graham. GO Cellular Compartment: extracellular region SoyBaseN/AISS
GO:0005773GO-cc Annotation by Michelle Graham. GO Cellular Compartment: vacuole SoyBaseN/AISS
PF04398PFAM Protein of unknown function, DUF538 JGI ISS
UniRef100_I1KSA4UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1KSA4_SOYBN SoyBaseE_val: 7.00E-124ISS
UniRef100_Q10EV9UniRef Annotation by Michelle Graham. Most informative UniRef hit: Expressed protein n=1 Tax=Oryza sativa Japonica Group RepID=Q10EV9_ORYSJ SoyBaseE_val: 9.00E-31ISS

Expression Patterns of Glyma08g11870
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma08g11870 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.08g112500 Wm82.a2.v1IGC As supplied by JGI

References for Glyma08g11870
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma08g11870
>Glyma08g11870.1   sequence type=CDS   gene model=Glyma08g11870   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATCCTGATCCAATCCTTGACAGCTAGGAAGCGTCTGAGTCCGAGGGAAGACATGTTCCCACAAACCCTAATATTGTTCTCAGCACTCATAATCCTCTTCCATGGAGATCTCGTCTTAAGCACAACAGCACCAGATGATATCCACGATGTTCTCCCTCAGTACGGTTTCCCAAAGGGTCTTCTTCCCAACAACGCGGTCTCCTACACCCTCTCCCCCGACGATGGCTTCTTCACCGTCCAGCTCGATGCCCCCTGCTACGTCCACTGGGACGACCAATTAGTCTACTACCACAGCCAAATCAGTGGCACTCTCACCTACGGTTCCGTCTCGCACGTGTCGGGGATTCAGGCCCAGAAACTCTTCCTCTGGCTCCCTGTTACCGGAATTAAGGTCCACCAGGATTCCGGCATGTTAGAGTTCTTCGTTGGAGCTTTGTCCCAGACGCTACCCGCCAGCGACTTCCAGGATGTGCCTGGGTGCTCCCGCAGAGGATCGCTGCTCGCTACAAACCTCATTCTTCCTCTCTGA
Predicted protein sequences of Glyma08g11870
>Glyma08g11870.1   sequence type=predicted peptide   gene model=Glyma08g11870   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MILIQSLTARKRLSPREDMFPQTLILFSALIILFHGDLVLSTTAPDDIHDVLPQYGFPKGLLPNNAVSYTLSPDDGFFTVQLDAPCYVHWDDQLVYYHSQISGTLTYGSVSHVSGIQAQKLFLWLPVTGIKVHQDSGMLEFFVGALSQTLPASDFQDVPGCSRRGSLLATNLILPL*






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