Report for Sequence Feature Glyma08g11825
Feature Type: gene_model
Chromosome: Gm08
Start: 8609441
stop: 8610027
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma08g11825
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT4G13600 AT
Annotation by Michelle Graham. TAIR10: Carbohydrate-binding X8 domain superfamily protein | chr4:7911179-7912892 REVERSE LENGTH=231
SoyBase E_val: 5.00E-28 ISS
GO:0005886 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane
SoyBase N/A ISS
PTHR16631 Panther
GLUCAN 1,3-BETA-GLUCOSIDASE-RELATED
JGI ISS
PF07983 PFAM
X8 domain
JGI ISS
UniRef100_G7LHW7 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Glucan endo-1 3-beta-glucosidase n=1 Tax=Medicago truncatula RepID=G7LHW7_MEDTR
SoyBase E_val: 8.00E-33 ISS
UniRef100_I1K3U7 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K3U7_SOYBN
SoyBase E_val: 2.00E-58 ISS
Expression Patterns of Glyma08g11825
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma08g11825
Paralog Evidence Comments
Glyma05g28700 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma08g11825 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.08g112200 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma08g11825
Coding sequences of Glyma08g11825
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma08g11825.1 sequence type=CDS gene model=Glyma08g11825 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
GCAAGGAGCAACGCTGGCTACGGGGCACTGAAGTCAGGGTTGGCCTTTGCATGCTCACATGGAGCTGACTGCAGGGCAATTCAACCCGGTGGCAGTTGCTTCAACCCTAACACCATTCAAAACCATGCTTCTTATGCCTTTGACAGCTACTATCAGACCCATGCCAAAAACCCTGCTGCATGCAATTTTGGTGGCACAGCCACCATTGCCGTTACTAATCCCAGCTTTGGACGTTGTGTGTACCCACCTTTTTCAAGCACTGATGGAGGAGTTGATACAACAATCACGGGGCTTCAATGA
Predicted protein sequences of Glyma08g11825
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma08g11825.1 sequence type=predicted peptide gene model=Glyma08g11825 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ARSNAGYGALKSGLAFACSHGADCRAIQPGGSCFNPNTIQNHASYAFDSYYQTHAKNPAACNFGGTATIAVTNPSFGRCVYPPFSSTDGGVDTTITGLQ*