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Report for Sequence Feature Glyma08g11781

Feature Type:gene_model
Chromosome:Gm08
Start:8578563
stop:8581450
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma08g11781
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G55160AT Annotation by Michelle Graham. TAIR10: small ubiquitin-like modifier 2 | chr5:22383747-22384772 REVERSE LENGTH=103 SoyBaseE_val: 5.00E-19ISS
GO:0000394GO-bp Annotation by Michelle Graham. GO Biological Process: RNA splicing, via endonucleolytic cleavage and ligation SoyBaseN/AISS
GO:0006094GO-bp Annotation by Michelle Graham. GO Biological Process: gluconeogenesis SoyBaseN/AISS
GO:0007010GO-bp Annotation by Michelle Graham. GO Biological Process: cytoskeleton organization SoyBaseN/AISS
GO:0009086GO-bp Annotation by Michelle Graham. GO Biological Process: methionine biosynthetic process SoyBaseN/AISS
GO:0009408GO-bp Annotation by Michelle Graham. GO Biological Process: response to heat SoyBaseN/AISS
GO:0010498GO-bp Annotation by Michelle Graham. GO Biological Process: proteasomal protein catabolic process SoyBaseN/AISS
GO:0016925GO-bp Annotation by Michelle Graham. GO Biological Process: protein sumoylation SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0031386GO-mf Annotation by Michelle Graham. GO Molecular Function: protein tag SoyBaseN/AISS
KOG1769 KOG Ubiquitin-like proteins JGI ISS
PF11976PFAM Ubiquitin-2 like Rad60 SUMO-like JGI ISS
UniRef100_J7G3S1UniRef Annotation by Michelle Graham. Most informative UniRef hit: SUMO peptide n=1 Tax=Gossypium hirsutum RepID=J7G3S1_GOSHI SoyBaseE_val: 4.00E-15ISS
UniRef100_UPI0002339F3FUniRef Annotation by Michelle Graham. Best UniRef hit: UPI0002339F3F related cluster n=1 Tax=unknown RepID=UPI0002339F3F SoyBaseE_val: 7.00E-62ISS

Expression Patterns of Glyma08g11781
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma08g11781 not represented in the dataset
Glyma08g11781 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g11781
ParalogEvidenceComments
Glyma05g28665 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g11781 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.08g111800 Wm82.a2.v1IGC As supplied by JGI

References for Glyma08g11781
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Transcripts of Glyma08g11781
>Glyma08g11781.2   sequence type=transcript   gene model=Glyma08g11781   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GCTACATTTAATTTAGTAGGCTTGTAGCTTCTTGCATAAAAAATCTAAAGAAAGAAGAGCTAGGCCAACAACATTGAAAGCTATCAAGAGGGAATCAATTCCCTTTGCAGGCTGCAGCAATATATCGTCATCACCTTATGAAAAGTAACATTGGATATTAAACATCAATTTGAAAATGTACACAGTAGAGAGATTCTGGGAACTAGGAGCTTTGAAAAATTGCAGCCTTTGCTAAATAGCAATATATTTTCTCCCAGTTCATTTTAAAATTCTGAAAGAGAAAAAACTACCTGAAGAAGTTAATTTAAACATCACATTTGTCTTTCTCTCCTTCCACCTTTTCTTGAAAGCCTTTATCTCAGCTTCAAGCCTTCAACCCTCTCTTTTACAGTAGAAGAATATGGCTACTAATGGTCCACTTAAGAGAAAATCTCCACCAGATGATGATTCTGTCAACTTAAAAATCAAACTTCAGGATGGGCGTAATTTGTTCTTCAAGGTGAACCGGGATTTGAAGTTAATTAATGTATTCAAAGAATTCTGTGATCGACAGAATTTGGATTACGAGACGCTGAAGTTCATTTATGACGGTTTTAACATTAAGGGGAAACATACAGCAAGAATGCTTAATATGGAAGATGATGCTGAGATCGTGGCCATAAGATCACAAATTGGAGGTGGTGCTGCAGCACTTTGACTCTTGAAAGCATTAGCTAGGAAATGGTTGTTGTAATATTGCTTGGATCGAGTTTGTTAATTTGCTTAACTAATATGGTACATTAATTATCAGAAAAAAAAAAAATACGCACCTTAACTCCTTGTATACCAAGCTTATATGTTAAACTTGAGAGGTAGTAGTAACTAATGTACTCAACAAAACTGAAGACTAATTAAGGACTTAGGAGAGA
Coding sequences of Glyma08g11781
>Glyma08g11781.1   sequence type=CDS   gene model=Glyma08g11781   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTACTAATGGTCCACTTAAGAGAAAATCTCCACCAGATGATGATTCTGTCAACTTAAAAATCAAACTTCAGGATGGGCGTAATTTGTTCTTCAAGGTGAACCGGGATTTGAAGTTAATTAATGTATTCAAAGAATTCTGTGATCGACAGAATTTGGATTACGAGACGCTGAAGTTCATTTATGACGGTTTTAACATTAAGGGGAAACATACAGCAAGAATGCTTAATATGGAAGATGATGCTGAGATCGTGGCCATAAGATCACAAATTGGAGGTGGTGCTGCAGCACTTTGA

>Glyma08g11781.2   sequence type=CDS   gene model=Glyma08g11781   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTACTAATGGTCCACTTAAGAGAAAATCTCCACCAGATGATGATTCTGTCAACTTAAAAATCAAACTTCAGGATGGGCGTAATTTGTTCTTCAAGGTGAACCGGGATTTGAAGTTAATTAATGTATTCAAAGAATTCTGTGATCGACAGAATTTGGATTACGAGACGCTGAAGTTCATTTATGACGGTTTTAACATTAAGGGGAAACATACAGCAAGAATGCTTAATATGGAAGATGATGCTGAGATCGTGGCCATAAGATCACAAATTGGAGGTGGTGCTGCAGCACTTTGA
Predicted protein sequences of Glyma08g11781
>Glyma08g11781.1   sequence type=predicted peptide   gene model=Glyma08g11781   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MATNGPLKRKSPPDDDSVNLKIKLQDGRNLFFKVNRDLKLINVFKEFCDRQNLDYETLKFIYDGFNIKGKHTARMLNMEDDAEIVAIRSQIGGGAAAL*

>Glyma08g11781.2   sequence type=predicted peptide   gene model=Glyma08g11781   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MATNGPLKRKSPPDDDSVNLKIKLQDGRNLFFKVNRDLKLINVFKEFCDRQNLDYETLKFIYDGFNIKGKHTARMLNMEDDAEIVAIRSQIGGGAAAL*






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