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Report for Sequence Feature Glyma08g11670

Feature Type:gene_model
Chromosome:Gm08
Start:8498707
stop:8513872
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G32810AT Annotation by Michelle Graham. TAIR10: beta galactosidase 9 | chr2:13919410-13925325 REVERSE LENGTH=887 SoyBaseE_val: 0ISS
GO:0005975GO-bp Annotation by Michelle Graham. GO Biological Process: carbohydrate metabolic process SoyBaseN/AISS
GO:0005990GO-bp Annotation by Michelle Graham. GO Biological Process: lactose catabolic process SoyBaseN/AISS
GO:0019513GO-bp Annotation by Michelle Graham. GO Biological Process: lactose catabolic process, using glucoside 3-dehydrogenase SoyBaseN/AISS
GO:0019515GO-bp Annotation by Michelle Graham. GO Biological Process: lactose catabolic process via UDP-galactose SoyBaseN/AISS
GO:0005576GO-cc Annotation by Michelle Graham. GO Cellular Compartment: extracellular region SoyBaseN/AISS
GO:0005773GO-cc Annotation by Michelle Graham. GO Cellular Compartment: vacuole SoyBaseN/AISS
GO:0005774GO-cc Annotation by Michelle Graham. GO Cellular Compartment: vacuolar membrane SoyBaseN/AISS
GO:0009505GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plant-type cell wall SoyBaseN/AISS
GO:0003824GO-mf Annotation by Michelle Graham. GO Molecular Function: catalytic activity SoyBaseN/AISS
GO:0004553GO-mf Annotation by Michelle Graham. GO Molecular Function: hydrolase activity, hydrolyzing O-glycosyl compounds SoyBaseN/AISS
GO:0004565GO-mf Annotation by Michelle Graham. GO Molecular Function: beta-galactosidase activity SoyBaseN/AISS
GO:0030246GO-mf Annotation by Michelle Graham. GO Molecular Function: carbohydrate binding SoyBaseN/AISS
GO:0043169GO-mf Annotation by Michelle Graham. GO Molecular Function: cation binding SoyBaseN/AISS
KOG0496 KOG Beta-galactosidase JGI ISS
PTHR23421Panther BETA-GALACTOSIDASE RELATED JGI ISS
PTHR23421:SF30Panther SUBFAMILY NOT NAMED JGI ISS
PF01301PFAM Glycosyl hydrolases family 35 JGI ISS
PF02140PFAM Galactose binding lectin domain JGI ISS
UniRef100_Q6X0N7UniRef Annotation by Michelle Graham. Best UniRef hit: Beta-galactosidase n=2 Tax=Glycine max RepID=Q6X0N7_SOYBN SoyBaseE_val: 0ISS
UniRef100_Q6X0N7UniRef Annotation by Michelle Graham. Most informative UniRef hit: Beta-galactosidase n=2 Tax=Glycine max RepID=Q6X0N7_SOYBN SoyBaseE_val: 0ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Corresponding NameAnnotation VersionEvidenceComments
Glyma.08g111000 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma08g11670.1   sequence type=CDS   gene model=Glyma08g11670   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCTGCGTAATTCCAATTCCAGAGGAGGATTTGGATCAGGAATGGTAGTGGCAGTGGTATGTGTGTGTGTTTGCGTAGTAGCAATGGAGTATGGAGTAAGAGTGACGGAGGGGGAAGAGTATTTCAAACCGTTCAACGTGAGCTACGATCACCGCGCTCTCATCCTCAACGGCAAACGCCGCTTCCTCATCTCCGCCGGAATCCACTATCCACGCGCCACTCCCGAGATGTGGCCTGATTTGATTGCAAAGAGCAAGGAAGGTGGGGCGGATGTGATTGAAACTTATGTTTTCTGGAATGGGCATGAGCCAGTGAGAGGACAGTATAATTTTGAAGGGAGATATGATCTTGTGAAGTTTGTGAGACTAGCTGCATCCCATGGACTCTATTTCTTTCTCCGCATAGGCCCTTATGCGTGTGCCGAATGGAACTTTGGGGGTTTCCCTGTGTGGTTGCGTGATATCCCTGGTATTGAATTTCGAACAAACAATGCACCTTTCAAGGAGGAGATGAAGCGCTTTGTCTCCAAGGTGGTGAATCTGATGAGAGAGGAAAGGCTGTTTTCTTGGCAAGGTGGTCCCATAATTTTGTTGCAGATTGAGAATGAATATGGGAACATTGAGAATTCCTATGGTAAAGGAGGTAAAGAGTATATGAAATGGGCGGCTAAGATGGCTCTAAGTCTTGGTGCTGGGGTTCCATGGGTCATGTGTAGACAGCAGGATGCTCCATATGACATTATTGATACATGCAATGCATACTACTGTGATGGATTTAAACCAAACTCTCATAACAAACCAACGATGTGGACAGAGAACTGGGATGGATGGTATACACAATGGGGTGAAAGATTGCCTCATAGACCTGTTGAAGACCTTGCTTTTGCAGTTGCACGTTTTTTCCAACGTGGAGGAAGCTTTCAAAACTATTACATGTATTTTGGCGGAACAAATTTTGGCCGCACTGCAGGGGGACCCTTGCAAATTACAAGTTATGATTATGATGCTCCAATTGATGAGTATGGTCTGCTGCGTGAACCAAAATGGGGTCACTTGAAAGATTTACATGCTGCTTTGAAGCTTTGTGAGCCTGCCCTGGTGGCCACTGATTCACCAACATATATAAAATTGGGTCCAAAGCAGGAGGCACATGTGTACCAAGCAAATGTTCACCTTGAAGGGTTAAACTTGTCTATGTTTGAATCTTCAAGCATATGCTCAGCATTTCTTGCCAACATTGATGAATGGAAAGAGGCAACTGTGACCTTTCGCGGTCAAAGATACACTATACCACCATGGTCTGTGAGTGTTTTGCCAGATTGCAGAAATACAGTTTTCAATACTGCCAAGGTTAGAGCACAAACTTCTGTCAAACTGGTAGAGTCTTATTTGCCAACTGTCTCTAATATTTTCCCAGCCCAGCAATTGAGGCACCAGAATGACTTTTACTACATCTCAAAGTCTTGGATGACTACAAAAGAGCCACTCAATATATGGAGTAAGAGCAGTTTCACTGTAGAAGGTATATGGGAGCACTTAAATGTTACAAAGGATCAATCTGATTACCTTTGGTATTCAACCAGAGTATATGTTTCAGATAGTGACATCTTGTTTTGGGAGGAAAATGATGTCCATCCAAAACTTACTATAGATGGTGTCCGTGACATATTGCGTGTATTCATCAATGGCCAGCTTATAGGTAATGTTGTTGGTCATTGGATCAAGGTGGTCCAGACTCTTCAATTTCTCCCAGGATACAATGATTTAACACTGTTAACTCAAACAGTGGGTTTACAGAATTATGGCGCTTTTCTTGAGAAGGATGGAGCAGGGATTAGAGGTAAAATAAAGATCACTGGATTTGAAAATGGAGATATAGATCTTTCAAAATCATTATGGACCTATCAGGTTGGGCTTCAGGGTGAGTTTTTAAAATTTTACAGTGAAGAGAATGAAAATTCAGAATGGGTAGAGTTGACCCCTGATGCCATCCCATCCACATTTACATGGTACAAGACATATTTTGATGTCCCTGGTGGCATAGATCCGGTTGCTCTAGACTTCAAAAGCATGGGAAAAGGTCAGGCTTGGGTGAATGGTCAACATATAGGAAGATACTGGACTCGGGTTTCCCCAAAAAGTGGATGTCAACAAGTCTGTGATTATCGTGGAGCATATAATTCCGACAAGTGTTCAACAAATTGTGGAAAACCAACCCAAACCTTGTACCATGTGCCACGATCATGGTTGAAAGCAACCAACAATTTACTTGTTATCTTAGAGGAAACCGGAGGAAATCCCTTTGAAATTTCAGTTAAGTTACATTCGTCCAGAATAATATGTGCTCAAGTGTCAGAATCCAACTATCCACCTTTGCAAAAGTTGGTGAATGCAGATCTCATTGGTGAAGAAGTTTCGGCAAATAATATGATACCTGAACTGCACTTACATTGTCAACAAGGACACACAATTTCCTCCGTAGCATTTGCAAGCTTTGGTACTCCAGGAGGTAGTTGTCAGAATTTTTCTAGAGGAAACTGCCATGCACCTAGTTCAATGTCGATAGTTTCTGAGGCTTGCCAAGGGAAAAGGAGCTGCTCCATCAAAATCTCAGACAGTGCATTCGGGGTAGACCCGTGTCCGGGTGTGGTGAAAACATTGTCAGTGGAAGCAAGATGCACATCACCATTGAGTGATGACTTCTTTCAAGAGGCTGTTAGCAGCTTCTAA

>Glyma08g11670.1   sequence type=predicted peptide   gene model=Glyma08g11670   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLRNSNSRGGFGSGMVVAVVCVCVCVVAMEYGVRVTEGEEYFKPFNVSYDHRALILNGKRRFLISAGIHYPRATPEMWPDLIAKSKEGGADVIETYVFWNGHEPVRGQYNFEGRYDLVKFVRLAASHGLYFFLRIGPYACAEWNFGGFPVWLRDIPGIEFRTNNAPFKEEMKRFVSKVVNLMREERLFSWQGGPIILLQIENEYGNIENSYGKGGKEYMKWAAKMALSLGAGVPWVMCRQQDAPYDIIDTCNAYYCDGFKPNSHNKPTMWTENWDGWYTQWGERLPHRPVEDLAFAVARFFQRGGSFQNYYMYFGGTNFGRTAGGPLQITSYDYDAPIDEYGLLREPKWGHLKDLHAALKLCEPALVATDSPTYIKLGPKQEAHVYQANVHLEGLNLSMFESSSICSAFLANIDEWKEATVTFRGQRYTIPPWSVSVLPDCRNTVFNTAKVRAQTSVKLVESYLPTVSNIFPAQQLRHQNDFYYISKSWMTTKEPLNIWSKSSFTVEGIWEHLNVTKDQSDYLWYSTRVYVSDSDILFWEENDVHPKLTIDGVRDILRVFINGQLIGNVVGHWIKVVQTLQFLPGYNDLTLLTQTVGLQNYGAFLEKDGAGIRGKIKITGFENGDIDLSKSLWTYQVGLQGEFLKFYSEENENSEWVELTPDAIPSTFTWYKTYFDVPGGIDPVALDFKSMGKGQAWVNGQHIGRYWTRVSPKSGCQQVCDYRGAYNSDKCSTNCGKPTQTLYHVPRSWLKATNNLLVILEETGGNPFEISVKLHSSRIICAQVSESNYPPLQKLVNADLIGEEVSANNMIPELHLHCQQGHTISSVAFASFGTPGGSCQNFSRGNCHAPSSMSIVSEACQGKRSCSIKISDSAFGVDPCPGVVKTLSVEARCTSPLSDDFFQEAVSSF*







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