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Report for Sequence Feature Glyma08g11580

Feature Type:gene_model
Chromosome:Gm08
Start:8439761
stop:8442634
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma08g11580
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G13830AT Annotation by Michelle Graham. TAIR10: DNAJ-like 20 | chr4:8011518-8012577 FORWARD LENGTH=197 SoyBaseE_val: 2.00E-61ISS
GO:0006457GO-bp Annotation by Michelle Graham. GO Biological Process: protein folding SoyBaseN/AISS
GO:0015996GO-bp Annotation by Michelle Graham. GO Biological Process: chlorophyll catabolic process SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0031072GO-mf Annotation by Michelle Graham. GO Molecular Function: heat shock protein binding SoyBaseN/AISS
PTHR25040Panther FAMILY NOT NAMED JGI ISS
PTHR25040:SF172Panther JGI ISS
PF00226PFAM DnaJ domain JGI ISS
UniRef100_A5A6Y4UniRef Annotation by Michelle Graham. Best UniRef hit: DnaJ-like protein n=2 Tax=Glycine max RepID=A5A6Y4_SOYBN SoyBaseE_val: 1.00E-136ISS
UniRef100_A5A6Y4UniRef Annotation by Michelle Graham. Most informative UniRef hit: DnaJ-like protein n=2 Tax=Glycine max RepID=A5A6Y4_SOYBN SoyBaseE_val: 1.00E-136ISS

Expression Patterns of Glyma08g11580
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma08g11580 not represented in the dataset
Glyma08g11580 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g11580
ParalogEvidenceComments
Glyma05g28560 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g11580 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.08g109700 Wm82.a2.v1IGC As supplied by JGI

References for Glyma08g11580
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma08g11580
>Glyma08g11580.1   sequence type=CDS   gene model=Glyma08g11580   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCGTTCTTATGGCTTAACCGTACCGGGAAGCGACCACCGCTTCTGCGTGCCCACCGTATCTCAGGTGTTCTTTAGGCCCAACAGGCCCATTAACCGAATCGCGTTTCCCAAGGCCACCCTCAAGAACGACGGCTTCGTGGTGGACCTGAGCTTCTACGACCTTCTGGGAATACCGGAATCCGGTTCGGTAACGGAGATCAAGAACGCCTACAAGCAACTCGCCCGAAAGTACCACCCGGACGTGTCGCCTCCGGGTCGGGTCGAGGAGTACACAAAGAGGTTTATTCAGGTGCAGGAGGCCTACGAAACCCTGTCTGATCCTTCCAGAAGAGCTATGTACGACAAGGACATGGCCAAGGGCATTAACTTCGCCTTCAACGCCCGCAGACGCTATAATTACCACGATCAGGTAGTTGAACAAAAAAGTGAATGGAAAGCTAGGTGGAAATCTCAACTGTCAGAGCTGAAGAGAAAAAGTAACGGCAAGGATGCTGGAGGGAATATGTCATGGGCGGCACGAATGCGCCAACAGAGGGATGAATTGTCAAATGAATCATGA
Predicted protein sequences of Glyma08g11580
>Glyma08g11580.1   sequence type=predicted peptide   gene model=Glyma08g11580   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MRSYGLTVPGSDHRFCVPTVSQVFFRPNRPINRIAFPKATLKNDGFVVDLSFYDLLGIPESGSVTEIKNAYKQLARKYHPDVSPPGRVEEYTKRFIQVQEAYETLSDPSRRAMYDKDMAKGINFAFNARRRYNYHDQVVEQKSEWKARWKSQLSELKRKSNGKDAGGNMSWAARMRQQRDELSNES*






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