Glyma08g11490 - SoyBase

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Report for Sequence Feature Glyma08g11490

Feature Type:	gene_model
Chromosome:	Gm08
Start:	8356291
stop:	8359019
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g11490

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G13930	AT	Annotation by Michelle Graham. TAIR10: serine hydroxymethyltransferase 4 \| chr4:8048013-8050021 REVERSE LENGTH=471	SoyBase	E_val: 0	ISS
GO:0006544	GO-bp	Annotation by Michelle Graham. GO Biological Process: glycine metabolic process	SoyBase	N/A	ISS
GO:0006563	GO-bp	Annotation by Michelle Graham. GO Biological Process: L-serine metabolic process	SoyBase	N/A	ISS
GO:0046686	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to cadmium ion	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0009506	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0003824	GO-mf	Annotation by Michelle Graham. GO Molecular Function: catalytic activity	SoyBase	N/A	ISS
GO:0004372	GO-mf	Annotation by Michelle Graham. GO Molecular Function: glycine hydroxymethyltransferase activity	SoyBase	N/A	ISS
GO:0030170	GO-mf	Annotation by Michelle Graham. GO Molecular Function: pyridoxal phosphate binding	SoyBase	N/A	ISS
KOG2467	KOG	Glycine/serine hydroxymethyltransferase	JGI		ISS
PTHR11680	Panther	SERINE HYDROXYMETHYLTRANSFERASE	JGI		ISS
PF00464	PFAM	Serine hydroxymethyltransferase	JGI		ISS
UniRef100_I1KS66	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Serine hydroxymethyltransferase n=1 Tax=Glycine max RepID=I1KS66_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_I1KS66	UniRef	Annotation by Michelle Graham. Best UniRef hit: Serine hydroxymethyltransferase n=1 Tax=Glycine max RepID=I1KS66_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma08g11490

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g11490

Paralog	Evidence	Comments
Glyma05g28490	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g11490 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g108900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g11490

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma08g11490

Limit To All Plant Sequences

>Glyma08g11490.2   sequence type=transcript   gene model=Glyma08g11490   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TTTCACACCCGGTCTCAAAGCTTTTAAAAACGAACACATACGCACTCACATTTCCATTCCACCTCAACAAACACAACAACACTCTCTCTTCTCGCTCTTGGCTTTTCGCTCTTCACTCACTCTCATTCATTCATTTCCACCGTTCATGGATCCAGTAAGCGTGTGGGGTAACACGCCCTTGGCGACGGTGGATCCCGAGATCCATGACCTCATCGAGAAGGAGAAGCGCCGTCAATGCCGCGGAATCGAGCTCATCGCCTCCGAGAACTTCACCTCCTTCGCCGTCATCGAGGCCCTCGGCAGCGCTCTCACGAACAAATACTCCGAGGGCATGCCGGGCAACCGCTACTACGGCGGCAATGAATACATCGACCAGATCGAAAACCTCTGCCGCTCACGCGCCCTCCAAGCCTTCCACCTCGACGCCCAATCCTGGGGCGTCAACGTCCAGCCCTACTCCGGCTCCCCGGCCAACTTCGCCGCCTACACCGCCGTCCTCAACCCCCACGACCGCATCATGGGGCTAGATCTCCCCTCCGGCGGCCACCTCACCCACGGCTACTACACCTCCGGCGGAAAGAAGATCTCCGCCACCTCCATTTACTTCGAGAGTCTCCCTTACAAGGTAAACTCCACCACCGGCTACATCGACTACGACCGCTTGGAAGAAAAAGCCCTAGACTTCAGGCCAAAACTCATAATCTGCGGTGGCAGCGCGTACCCTCGCGATTGGGACTACAAACGTTTCAGGGAAGTCGCTGATAAGTGCGGAGCATTGCTTCTCTGCGACATGGCGCACACTAGCGGCCTTGTGGCCGCGCAGGAAGTGAACAGCCCCTTCGAGTATTGCGACATTGTGACCACCACGACTCACAAGAGCTTGCGGGGCCCACGTGCGGGGATGATCTTTTACCGGAAGGGCCCCAAGCCGCCGAAGAAGGGGCAGCCGGAGAACGCGGTTTATGATTTCGAGGACAAGATTAACTTCGCGGTGTTCCCTTCGCTGCAGGGTGGGCCCCACAACCACCAGATCGGTGCTCTCGCCGTGGCGCTGAAGCAGGCCGCGTCGCCCGGGTTTAAGGCCTACGCGAAGCAGGTTAAGGCGAACGCCGTTGCGCTTGGAAAATACTTGATGGGGAAAGGGTACAGCCTTGTCACTGGCGGAACGGAGAACCATCTTGTTTTGTGGGATCTGAGACCTCTTGGATTGACTGGGAATAAGGTGGAGAAACTCTGTGATCTCTGTAACATTACTGTTAACAAGAACGCTGTTTTTGGTGATAGCAGTGCCTTGGCCCCTGGTGGAGTGCGAATTGGTGCCCCTGCCATGACTTCTAGGGGTTTGGTTGAAAAAGACTTTGAGCAGATTGGTGAGTTCCTTCACCGTGCTGTGACTCTCACACTGGAGATCCAGAAGGAGCATGGCAAACTTCTCAAGGATTTCAACAAGGGTCTCGTCAACAACAAGGCTATTGAAGATCTCAAAGCTGATGTTGAGAAGTTCTCTGCCTTGTTTGACATGCCTGGCTTCCTGGTATCTGAAATGAAGTACAAGGATTAGGTTCAACCATACCACTTTCTACTAAATTGTGTCACTCAAGTTCGACACAAAGTGCAGAAATGGAGAAAAAGGAAATATGTGTCTTCCTTTCCTGGGAGTGATAGGGTTTATCGCCATGGTGTTTCAATTCAAAAGTTTGAAGTTTCTTTGTCTTTGATTTCATGTTTAATTTTGTTAGCCTGATTGATATCATATTTTTTTTCTTATTTAACAATTGAAATAATACGTGCTGCCTTTCTTTCTTTTTTTTTCCTCGCTAGCTAGTAGTATGTTTCATGATTTCATCTTCTAATATTGCTCAACAGAACATCTTAATTCTTAACAACCATGAGTTTTAGTGGAGTTAAGCAAAAGAAAAAGTTATTCTAATAAATCTATCGTCTTTCTTATGCC

Coding sequences of Glyma08g11490

Limit To All Plant Sequences

>Glyma08g11490.1   sequence type=CDS   gene model=Glyma08g11490   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATCCAGTAAGCGTGTGGGGTAACACGCCCTTGGCGACGGTGGATCCCGAGATCCATGACCTCATCGAGAAGGAGAAGCGCCGTCAATGCCGCGGAATCGAGCTCATCGCCTCCGAGAACTTCACCTCCTTCGCCGTCATCGAGGCCCTCGGCAGCGCTCTCACGAACAAATACTCCGAGGGCATGCCGGGCAACCGCTACTACGGCGGCAATGAATACATCGACCAGATCGAAAACCTCTGCCGCTCACGCGCCCTCCAAGCCTTCCACCTCGACGCCCAATCCTGGGGCGTCAACGTCCAGCCCTACTCCGGCTCCCCGGCCAACTTCGCCGCCTACACCGCCGTCCTCAACCCCCACGACCGCATCATGGGGCTAGATCTCCCCTCCGGCGGCCACCTCACCCACGGCTACTACACCTCCGGCGGAAAGAAGATCTCCGCCACCTCCATTTACTTCGAGAGTCTCCCTTACAAGGTAAACTCCACCACCGGCTACATCGACTACGACCGCTTGGAAGAAAAAGCCCTAGACTTCAGGCCAAAACTCATAATCTGCGGTGGCAGCGCGTACCCTCGCGATTGGGACTACAAACGTTTCAGGGAAGTCGCTGATAAGTGCGGAGCATTGCTTCTCTGCGACATGGCGCACACTAGCGGCCTTGTGGCCGCGCAGGAAGTGAACAGCCCCTTCGAGTATTGCGACATTGTGACCACCACGACTCACAAGAGCTTGCGGGGCCCACGTGCGGGGATGATCTTTTACCGGAAGGGCCCCAAGCCGCCGAAGAAGGGGCAGCCGGAGAACGCGGTTTATGATTTCGAGGACAAGATTAACTTCGCGGTGTTCCCTTCGCTGCAGGGTGGGCCCCACAACCACCAGATCGGTGCTCTCGCCGTGGCGCTGAAGCAGGCCGCGTCGCCCGGGTTTAAGGCCTACGCGAAGCAGGTTAAGGCGAACGCCGTTGCGCTTGGAAAATACTTGATGGGGAAAGGGTACAGCCTTGTCACTGGCGGAACGGAGAACCATCTTGTTTTGTGGGATCTGAGACCTCTTGGATTGACTGGTAATATATATAGGATTGGATCTCTACCTTCTGGTTTTGATTTGTTACAAATGTCTATAAATCTGACTTGTTCGTTGTGTGATTGTTTTGCAGGGAATAAGGTGGAGAAACTCTGTGATCTCTGTAACATTACTGTTAACAAGAACGCTGTTTTTGGTGATAGCAGTGCCTTGGCCCCTGGTGGAGTGCGAATTGGTGCCCCTGCCATGACTTCTAGGGGTTTGGTTGAAAAAGACTTTGAGCAGATTGGTGAGTTCCTTCACCGTGCTGTGACTCTCACACTGGAGATCCAGAAGGAGCATGGCAAACTTCTCAAGGATTTCAACAAGGGTCTCGTCAACAACAAGGCTATTGAAGATCTCAAAGCTGATGTTGAGAAGTTCTCTGCCTTGTTTGACATGCCTGGCTTCCTGGTATCTGAAATGAAGTACAAGGATTAG

>Glyma08g11490.2   sequence type=CDS   gene model=Glyma08g11490   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATCCAGTAAGCGTGTGGGGTAACACGCCCTTGGCGACGGTGGATCCCGAGATCCATGACCTCATCGAGAAGGAGAAGCGCCGTCAATGCCGCGGAATCGAGCTCATCGCCTCCGAGAACTTCACCTCCTTCGCCGTCATCGAGGCCCTCGGCAGCGCTCTCACGAACAAATACTCCGAGGGCATGCCGGGCAACCGCTACTACGGCGGCAATGAATACATCGACCAGATCGAAAACCTCTGCCGCTCACGCGCCCTCCAAGCCTTCCACCTCGACGCCCAATCCTGGGGCGTCAACGTCCAGCCCTACTCCGGCTCCCCGGCCAACTTCGCCGCCTACACCGCCGTCCTCAACCCCCACGACCGCATCATGGGGCTAGATCTCCCCTCCGGCGGCCACCTCACCCACGGCTACTACACCTCCGGCGGAAAGAAGATCTCCGCCACCTCCATTTACTTCGAGAGTCTCCCTTACAAGGTAAACTCCACCACCGGCTACATCGACTACGACCGCTTGGAAGAAAAAGCCCTAGACTTCAGGCCAAAACTCATAATCTGCGGTGGCAGCGCGTACCCTCGCGATTGGGACTACAAACGTTTCAGGGAAGTCGCTGATAAGTGCGGAGCATTGCTTCTCTGCGACATGGCGCACACTAGCGGCCTTGTGGCCGCGCAGGAAGTGAACAGCCCCTTCGAGTATTGCGACATTGTGACCACCACGACTCACAAGAGCTTGCGGGGCCCACGTGCGGGGATGATCTTTTACCGGAAGGGCCCCAAGCCGCCGAAGAAGGGGCAGCCGGAGAACGCGGTTTATGATTTCGAGGACAAGATTAACTTCGCGGTGTTCCCTTCGCTGCAGGGTGGGCCCCACAACCACCAGATCGGTGCTCTCGCCGTGGCGCTGAAGCAGGCCGCGTCGCCCGGGTTTAAGGCCTACGCGAAGCAGGTTAAGGCGAACGCCGTTGCGCTTGGAAAATACTTGATGGGGAAAGGGTACAGCCTTGTCACTGGCGGAACGGAGAACCATCTTGTTTTGTGGGATCTGAGACCTCTTGGATTGACTGGGAATAAGGTGGAGAAACTCTGTGATCTCTGTAACATTACTGTTAACAAGAACGCTGTTTTTGGTGATAGCAGTGCCTTGGCCCCTGGTGGAGTGCGAATTGGTGCCCCTGCCATGACTTCTAGGGGTTTGGTTGAAAAAGACTTTGAGCAGATTGGTGAGTTCCTTCACCGTGCTGTGACTCTCACACTGGAGATCCAGAAGGAGCATGGCAAACTTCTCAAGGATTTCAACAAGGGTCTCGTCAACAACAAGGCTATTGAAGATCTCAAAGCTGATGTTGAGAAGTTCTCTGCCTTGTTTGACATGCCTGGCTTCCTGGTATCTGAAATGAAGTACAAGGATTAG

Predicted protein sequences of Glyma08g11490

Limit To All Plant Sequences

>Glyma08g11490.1   sequence type=predicted peptide   gene model=Glyma08g11490   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDPVSVWGNTPLATVDPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEYIDQIENLCRSRALQAFHLDAQSWGVNVQPYSGSPANFAAYTAVLNPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNSTTGYIDYDRLEEKALDFRPKLIICGGSAYPRDWDYKRFREVADKCGALLLCDMAHTSGLVAAQEVNSPFEYCDIVTTTTHKSLRGPRAGMIFYRKGPKPPKKGQPENAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQAASPGFKAYAKQVKANAVALGKYLMGKGYSLVTGGTENHLVLWDLRPLGLTGNIYRIGSLPSGFDLLQMSINLTCSLCDCFAGNKVEKLCDLCNITVNKNAVFGDSSALAPGGVRIGAPAMTSRGLVEKDFEQIGEFLHRAVTLTLEIQKEHGKLLKDFNKGLVNNKAIEDLKADVEKFSALFDMPGFLVSEMKYKD*

>Glyma08g11490.2   sequence type=predicted peptide   gene model=Glyma08g11490   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDPVSVWGNTPLATVDPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEYIDQIENLCRSRALQAFHLDAQSWGVNVQPYSGSPANFAAYTAVLNPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNSTTGYIDYDRLEEKALDFRPKLIICGGSAYPRDWDYKRFREVADKCGALLLCDMAHTSGLVAAQEVNSPFEYCDIVTTTTHKSLRGPRAGMIFYRKGPKPPKKGQPENAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQAASPGFKAYAKQVKANAVALGKYLMGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDSSALAPGGVRIGAPAMTSRGLVEKDFEQIGEFLHRAVTLTLEIQKEHGKLLKDFNKGLVNNKAIEDLKADVEKFSALFDMPGFLVSEMKYKD*

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