Report for Sequence Feature Glyma08g11450
Feature Type: gene_model
Chromosome: Gm08
Start: 8326471
stop: 8330542
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma08g11450
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT4G21110 AT
Annotation by Michelle Graham. TAIR10: G10 family protein | chr4:11267673-11268774 FORWARD LENGTH=145
SoyBase E_val: 1.00E-95 ISS
GO:0008150 GO-bp
Annotation by Michelle Graham. GO Biological Process: biological process
SoyBase N/A ISS
GO:0005634 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleus
SoyBase N/A ISS
GO:0005829 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: cytosol
SoyBase N/A ISS
KOG3404
KOG
G10 protein/predicted nuclear transcription regulator
JGI ISS
PTHR19411 Panther
G10 PROTEIN HOMOLOG
JGI ISS
PF01125 PFAM
G10 protein
JGI ISS
UniRef100_C6SVT6 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6SVT6_SOYBN
SoyBase E_val: 4.00E-103 ISS
UniRef100_G7LH30 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: BUD31-like protein n=1 Tax=Medicago truncatula RepID=G7LH30_MEDTR
SoyBase E_val: 2.00E-102 ISS
Expression Patterns of Glyma08g11450
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma08g11450
Paralog Evidence Comments
Glyma05g28440 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma08g11450 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.08g108500 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma08g11450
Transcripts of Glyma08g11450
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma08g11450.3 sequence type=transcript gene model=Glyma08g11450 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
GTAAACTCCTTCATGTTATTGTAACTGAGGACACTCTCTCTGCCACGTACTCTTAAATTTAATTCACATTTCATTGATCGTCTTACACACGTGGGGATTATTTCAGTGGCGTGAAACTTCCAGAAGAACTCAAAGTCACTCCTCTTCTGCTTGCCCTCTTTCGCTTCCTGCAAATCTTTCTGAGAATCGAGTCACAGACTAGAGCTAAATCAGCATAGAGATACAAAAATGCCAAAAGTAAAGACAAATCGTGTTAAATACCCAGAGGGCTGGGAATTAATTGAGCCTACACTCCGTGAACTTCAAGCAAAGATGAGGGAAGCTGAGAATGATCCGCATGATGGCAAAAGAAAATGTGAGACCTTATGGCCTATATTTAAGATTGCACACCAGAAGAGCCGCTACATATTTGATCTATACCATCGGAGGAAGGAAATTTCTAAAGAACTGTATGAATTCTGTTTAGATCAAGGATATGCTGACCGCAATCTAATTGCAAAATGGAAGAAGCCTGGTTATGAACGTCTTTGCTGCCTGAGGTGCATGCAGCCACGTGATCACAATTTTGCCACCACTTGTGTTTGCAGAGTACCCAAGCAACTTAGGGAGGAGAAGGTCATAGAGTGTGTTCACTGTGGATGCAAGGGTTGTGCAAGCGGGGACTAATTGAATATCGATTCTAGTTTTAGTTGCCAATGGAAGGTTTCTTAGAATTACTTTCTTTGTGCTTTTAGCTTAATGTTGTCTGAAACCCTCACCATGGGACACCACTTCTCCAGGTTGTATTACTGTCTACTAAATGAGTGCTATATATTGGGAACATTGGTTACATATTAGGGTGTGTTTGGTTTGCATTTTCATTTTCTGTTTTCATTTCCTGTTTTTATTTTTTGAAAATTGTTTTTATTTTCAAAAGATTTAAATTCTGAAAATATGTTTGGTTTGATTTCTTGTTTTCTGTTTTTATGAAATAAAAATACTGAAAATTTATGATATATTGACTTATTGTCTTTTTGTATTTTTAGATTTGCTTAAAACTACATTTATTGTCACCGCAATTTCATTTTAACCAAAATGAGGTTTCTGTTCTCAACTGAAAATACTGAAAACGAAAATTTTTTGTTTTCATTTTCTAGTTGTTTACTGTTTTCATTTTTACCGAAAATGTTTTCAGAAATCAAACCAAACACATTTTCATCACCGTTTTTTATTTTCAGTGAAAATAAAATCAAAAAACAACCAAACTAAACACTCCCTTAGTTATCTGCCTAGTTCAAAATCTGACGGGAGCTTTGTACCTTTTCATTGATTAGCCTAATATGGTGTACTTTTGCTCTATACTTCAAAGCTTTAATGCTGCTTTGGTTAAGATTGGAGCCAAGCTGGACAAACTCCAAAGTTTTTATTTTTTATTTTTTAAAGAGATCAATTTTGTGAGGGGAACATTGTAAAAGTCAAAGCATTATTCTGAGATAAATATATTTTTATGTCATTCTCCCAGTCAAATC
Coding sequences of Glyma08g11450
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma08g11450.1 sequence type=CDS gene model=Glyma08g11450 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGCCAAAAGTAAAGACAAATCGTGTTAAATACCCAGAGGGCTGGGAATTAATTGAGCCTACACTCCGTGAACTTCAAGCAAAGATGAGGGAAGCTGAGAATGATCCGCATGATGGCAAAAGAAAATGTGAGACCTTATGGCCTATATTTAAGATTGCACACCAGAAGAGCCGCTACATATTTGATCTATACCATCGGAGGAAGGAAATTTCTAAAGAACTGTATGAATTCTGTTTAGATCAAGGATATGCTGACCGCAATCTAATTGCAAAATGGAAGAAGCCTGGTTATGAACGTCTTTGCTGCCTGAGGTGCATGCAGCCACGTGATCACAATTTTGCCACCACTTGTGTTTGCAGAGTACCCAAGCAACTTAGGGAGGAGAAGGTCATAGAGTGTGTTCACTGTGGATGCAAGGGTTGTGCAAGCGGGGACTAA
>Glyma08g11450.3 sequence type=CDS gene model=Glyma08g11450 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGCCAAAAGTAAAGACAAATCGTGTTAAATACCCAGAGGGCTGGGAATTAATTGAGCCTACACTCCGTGAACTTCAAGCAAAGATGAGGGAAGCTGAGAATGATCCGCATGATGGCAAAAGAAAATGTGAGACCTTATGGCCTATATTTAAGATTGCACACCAGAAGAGCCGCTACATATTTGATCTATACCATCGGAGGAAGGAAATTTCTAAAGAACTGTATGAATTCTGTTTAGATCAAGGATATGCTGACCGCAATCTAATTGCAAAATGGAAGAAGCCTGGTTATGAACGTCTTTGCTGCCTGAGGTGCATGCAGCCACGTGATCACAATTTTGCCACCACTTGTGTTTGCAGAGTACCCAAGCAACTTAGGGAGGAGAAGGTCATAGAGTGTGTTCACTGTGGATGCAAGGGTTGTGCAAGCGGGGACTAA
Predicted protein sequences of Glyma08g11450
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma08g11450.1 sequence type=predicted peptide gene model=Glyma08g11450 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MPKVKTNRVKYPEGWELIEPTLRELQAKMREAENDPHDGKRKCETLWPIFKIAHQKSRYIFDLYHRRKEISKELYEFCLDQGYADRNLIAKWKKPGYERLCCLRCMQPRDHNFATTCVCRVPKQLREEKVIECVHCGCKGCASGD*
>Glyma08g11450.3 sequence type=predicted peptide gene model=Glyma08g11450 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MPKVKTNRVKYPEGWELIEPTLRELQAKMREAENDPHDGKRKCETLWPIFKIAHQKSRYIFDLYHRRKEISKELYEFCLDQGYADRNLIAKWKKPGYERLCCLRCMQPRDHNFATTCVCRVPKQLREEKVIECVHCGCKGCASGD*