SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G19710 | AT | Annotation by Michelle Graham. TAIR10: aspartate kinase-homoserine dehydrogenase ii | chr4:10725229-10729536 FORWARD LENGTH=916 | SoyBase | E_val: 0 | ISS |
| GO:0006164 | GO-bp | Annotation by Michelle Graham. GO Biological Process: purine nucleotide biosynthetic process | SoyBase | N/A | ISS |
| GO:0006520 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cellular amino acid metabolic process | SoyBase | N/A | ISS |
| GO:0008152 | GO-bp | Annotation by Michelle Graham. GO Biological Process: metabolic process | SoyBase | N/A | ISS |
| GO:0008652 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cellular amino acid biosynthetic process | SoyBase | N/A | ISS |
| GO:0009067 | GO-bp | Annotation by Michelle Graham. GO Biological Process: aspartate family amino acid biosynthetic process | SoyBase | N/A | ISS |
| GO:0055114 | GO-bp | Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0009570 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast stroma | SoyBase | N/A | ISS |
| GO:0000166 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleotide binding | SoyBase | N/A | ISS |
| GO:0004072 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: aspartate kinase activity | SoyBase | N/A | ISS |
| GO:0004412 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: homoserine dehydrogenase activity | SoyBase | N/A | ISS |
| GO:0016491 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity | SoyBase | N/A | ISS |
| GO:0016597 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: amino acid binding | SoyBase | N/A | ISS |
| GO:0050661 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: NADP binding | SoyBase | N/A | ISS |
| KOG0455 | KOG | Homoserine dehydrogenase | JGI | ISS | |
| PTHR21499 | Panther | ASPARTATE KINASE | JGI | ISS | |
| PTHR21499:SF3 | Panther | SUBFAMILY NOT NAMED | JGI | ISS | |
| PF00696 | PFAM | Amino acid kinase family | JGI | ISS | |
| PF00742 | PFAM | Homoserine dehydrogenase | JGI | ISS | |
| PF01842 | PFAM | ACT domain | JGI | ISS | |
| PF03447 | PFAM | Homoserine dehydrogenase, NAD binding domain | JGI | ISS | |
| UniRef100_I1KS56 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KS56_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_O63067 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Aspartokinase-homoserine dehydrogenase n=1 Tax=Glycine max RepID=O63067_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma08g11370 not represented in the dataset |
Glyma08g11370 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma05g28380 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.08g107800 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma08g11370.1 sequence type=CDS gene model=Glyma08g11370 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCGTCGTTTTCCGCCGCCGTCGCTCAGTTCTCCCGCGTTTCACCTTCTCACACTTCGCTCCACTCTCACTCTCACGGCACGCTCTTCCAATCTCAATGCCGCCCTTTCTTCCTCTCGCGCACTTCCCATTCACTCCGGAAGGGTCTTACTTTACCACGGGGAAGAGAGGCACCGAGTACATCTGTACGTGCTTCATTTACAGATGTTTCACCGAATGTGTCCTTGGAGGAAAAACAACTACCCAAAGGAGAAACTTGGTCTGTTCACAAATTTGGTGGAACCTGTGTGGGAACCTCTCAGAGAATAAAAAATGTTGCGGACATAATTCTTAAGGATGATTCGGAGAGGAAATTGGTGGTTGTTTCTGCAATGTCAAAGGTGACAGATATGATGTATGACCTTATCCACAAGGCTCAATCACGCGATGAGTCTTATACAGCTGCATTAAATGCTGTTTTGGAGAAGCACAGTGCAACTGCACATGACATACTTGATGGAGATAATCTTGCTACTTTCTTGTCTAAATTGCATCATGATATTAGTAACCTTAAGGCGATGCTTCGTGCAATATACATAGCTGGTCATGCAACAGAGTCCTTTACAGATTTTGTTGTGGGACATGGAGAATTATGGTCTGCTCAGATGTTGTCTCTAGTTATTAGGAAGAATGGGACTGATTGCAAATGGATGGATACAAGGGATGTCCTTATCGTAAATCCTACTGGTTCTAATCAAGTTGATCCTGACTATTTGGAATCTGAGCAAAGACTTGAAAAATGGTACTCTTTGAATCCATGTAAGGTAATCATTGCCACTGGATTCATTGCAAGCACACCTCAAAACATTCCTACCACACTGAAGAGAGATGGAAGTGACTTCTCGGCAGCAATTATGGGTGCTCTATTTAAGGCTCGTCAGGTCACAATTTGGACAGATGTTGATGGTGTGTATAGTGCAGATCCTAGAAAAGTTAGTGAGGCTGTGATTTTGAAGACACTGTCTTATCAAGAGGCTTGGGAAATGTCTTATTTTGGTGCCAATGTCTTGCATCCCCGCACAATTATTCCTGTGATGCGATATGGCATACCCATTATGATAAGGAACATTTTCAACCTTTCTGCTCCTGGAACAAAGATCTGCCATCCTTCTGTTAATGATCATGAAGATAGCCAGAACCTGCAAAATTTTGTCAAAGGATTTGCAACCATAGACAACTTGGCACTTGTAAACGTCGAGGGAACTGGAATGGCTGGTGTTCCAGGTACTGCCAGTGCTATTTTTGGTGCAGTAAAAGATGTTGGAGCTAATGTTATCATGATATCTCAGGCTAGTAGTGAGCATTCTGTATGCTTTGCTGTGCCCGAGAAAGAAGTAAAAGCTGTTGCTGAGGCATTGCAATCTAGATTTCGTCAAGCTTTGGATAATGGGCGTCTTTCTCAGGTTGCAGTCATTCCAAATTGTAGCATTCTGGCTGCAGTTGGCCAGAAAATGGCAAGCACTCCTGGTGTTAGTGCCTCCCTTTTCAATGCATTGGCTAAGGCCAATATAAATGTCCGTGCTATAGCCCAAGGTTGTTCTGAGTACAATATTACTGTTGTTGTTAAGCGAGAGGATTGTATAAAGGCTTTACGAGCTGTCCATTCCAGATTTTATCTCTCAAGAACCACCATAGCAATGGGCATTATTGGACCTGGATTAATTGGGAGCACACTACTTGAGCAGCTAAGGGATCAGGCCTCAACCCTAAAAGAAGAATTCAACATCGATTTGCGTGTAATGGGCATACTTGGTTCAAAGTCAATGCTTCTTAGTGATGTGGGCATTGACTTAGCTAGATGGAGAGAACTTCGAGAGGAAAGAGGAGAAGTGGCTAATATGGAAAAATTTGTTCAACATGTACATGGAAATCATTTTATACCAAACACGGCATTAGTGGACTGCACAGCTGACTCTGTCATTGCTGGCTATTACTATGATTGGTTGCGCAAAGGAATACATGTAGTTACTCCTAACAAGAAGGCAAATTCAGGACCACTTGATCAGTATTTGAAGTTAAGAGCTCTTCAAAGGCAATCCTATACACATTACTTCTATGAAGCAACTGTCGGAGCTGGTCTTCCAATTGTTAGCACTTTACGTGGCCTCCTTGAAACTGGAGACAAAATATTACAAATCGAAGGCATCTTTAGTGGGACTTTGAGTTACATATTTAATAACTTTAAAGATGGCCGGGCTTTTAGTGAGGTAGTTTCTGAAGCAAAGGAAGCAGGTTATACTGAGCCAGATCCAAGAGATGATCTGTCTGGAACAGATGTTGCCAGAAAGGTTATAATTCTTGCTAGGGAGTCGGGTTTAAAGCTAGAACTGTCTAATATTCCAGTTGAAAGCCTTGTGCCAGAACCACTACGAGCTTGTGCATCAGCTCAGGAGTTTATGCAAGAGCTACCAAAATTTGATCAGGAGTTCACAAAGAAACAAGAAGATGCTGAGAATGCTGGGGAAGTCTTGAGATACGTTGGAGTGGTGGACGTGACTAATAAAAAAGGAGTGGTAGAGCTGCGAAGATACAAGAAGGATCATCCCTTTGCGCAATTGTCTGGGTCAGATAACATTATTGCATTTACAACACGAAGGTATAAGGATCAGCCTCTGATAGTTCGTGGGCCAGGAGCTGGTGCTCAAGTCACCGCTGGTGGAATATTTAGTGATATTTTACGACTTGCCTCATATCTTGGTGCTCCATCGTAA
>Glyma08g11370.1 sequence type=predicted peptide gene model=Glyma08g11370 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MASFSAAVAQFSRVSPSHTSLHSHSHGTLFQSQCRPFFLSRTSHSLRKGLTLPRGREAPSTSVRASFTDVSPNVSLEEKQLPKGETWSVHKFGGTCVGTSQRIKNVADIILKDDSERKLVVVSAMSKVTDMMYDLIHKAQSRDESYTAALNAVLEKHSATAHDILDGDNLATFLSKLHHDISNLKAMLRAIYIAGHATESFTDFVVGHGELWSAQMLSLVIRKNGTDCKWMDTRDVLIVNPTGSNQVDPDYLESEQRLEKWYSLNPCKVIIATGFIASTPQNIPTTLKRDGSDFSAAIMGALFKARQVTIWTDVDGVYSADPRKVSEAVILKTLSYQEAWEMSYFGANVLHPRTIIPVMRYGIPIMIRNIFNLSAPGTKICHPSVNDHEDSQNLQNFVKGFATIDNLALVNVEGTGMAGVPGTASAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAEALQSRFRQALDNGRLSQVAVIPNCSILAAVGQKMASTPGVSASLFNALAKANINVRAIAQGCSEYNITVVVKREDCIKALRAVHSRFYLSRTTIAMGIIGPGLIGSTLLEQLRDQASTLKEEFNIDLRVMGILGSKSMLLSDVGIDLARWRELREERGEVANMEKFVQHVHGNHFIPNTALVDCTADSVIAGYYYDWLRKGIHVVTPNKKANSGPLDQYLKLRALQRQSYTHYFYEATVGAGLPIVSTLRGLLETGDKILQIEGIFSGTLSYIFNNFKDGRAFSEVVSEAKEAGYTEPDPRDDLSGTDVARKVIILARESGLKLELSNIPVESLVPEPLRACASAQEFMQELPKFDQEFTKKQEDAENAGEVLRYVGVVDVTNKKGVVELRRYKKDHPFAQLSGSDNIIAFTTRRYKDQPLIVRGPGAGAQVTAGGIFSDILRLASYLGAPS*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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