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Report for Sequence Feature Glyma08g11350

Feature Type:gene_model
Chromosome:Gm08
Start:8280312
stop:8284476
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G23750AT Annotation by Michelle Graham. TAIR10: Leucine-rich repeat protein kinase family protein | chr3:8558332-8561263 FORWARD LENGTH=928 SoyBaseE_val: 0ISS
GO:0006468GO-bp Annotation by Michelle Graham. GO Biological Process: protein phosphorylation SoyBaseN/AISS
GO:0005576GO-cc Annotation by Michelle Graham. GO Cellular Compartment: extracellular region SoyBaseN/AISS
GO:0005794GO-cc Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus SoyBaseN/AISS
GO:0005886GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane SoyBaseN/AISS
GO:0009506GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma SoyBaseN/AISS
GO:0004672GO-mf Annotation by Michelle Graham. GO Molecular Function: protein kinase activity SoyBaseN/AISS
GO:0004674GO-mf Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine kinase activity SoyBaseN/AISS
GO:0005524GO-mf Annotation by Michelle Graham. GO Molecular Function: ATP binding SoyBaseN/AISS
GO:0016772GO-mf Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring phosphorus-containing groups SoyBaseN/AISS
KOG1187 KOG Serine/threonine protein kinase JGI ISS
PTHR24420Panther FAMILY NOT NAMED JGI ISS
PF00069PFAM Protein kinase domain JGI ISS
PF00560PFAM Leucine Rich Repeat JGI ISS
PF08263PFAM Leucine rich repeat N-terminal domain JGI ISS
UniRef100_E2GLM8UniRef Annotation by Michelle Graham. Best UniRef hit: Leucine-rich repeat receptor-like kinase n=2 Tax=Glycine max RepID=E2GLM8_SOYBN SoyBaseE_val: 0ISS
UniRef100_E2GLM8UniRef Annotation by Michelle Graham. Most informative UniRef hit: Leucine-rich repeat receptor-like kinase n=2 Tax=Glycine max RepID=E2GLM8_SOYBN SoyBaseE_val: 0ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

ParalogEvidenceComments
Glyma05g28350 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Corresponding NameAnnotation VersionEvidenceComments
Glyma.08g107700 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma08g11350.1   sequence type=CDS   gene model=Glyma08g11350   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACACGACAGCGTCTTCTCAGCAAAAACAAAAAACACTGCCTCATCCATCTCTTCGTGTTCCGTTCTTTTACTACAGCTTTGCTACTACTGTCTTCTACAAACCTTCTTCCCTCTCTTCTCCATAACACTTCCCACCAACCCAAGTTCAACACCTCTCTCTCTCTCTCTCTCACACAAACACTTCTCCCAACCCTAATGTCTCTCCCCAAAACCCTACTTTCTCTCTTCCTTCTCCTCACGATCCCCCTAGTAACCGCCGATGACGCCGCGGTGATGTCGAATTTTCTCAAATCCCTCACTCCACCGCCCTCGGGCTGGTCTGAAACAACCCCATTCTGCCAATGGAAGGGTATCCAATGCGATTCATCCAGCCACGTGACCAGCATAAGCCTCGCTTCGCATTCCCTCACCGGAACACTCCCCTCGGATCTCAATTCCCTCTCTCAACTCCGCACTCTCTCCCTCCAAGACAATTCCCTCACCGGCACCCTCCCTTCTCTCTCCAACCTTTCTTTCCTCCAAACCGTCTACTTAAACCGCAACAACTTCTCCTCCGTGTCCCCCACCGCTTTCGCCTCCCTAACCTCCCTCCAAACCCTCAGCCTCGGCTCCAACCCTGCTCTCCAACCCTGGTCCTTCCCCACCGACCTCACTTCCTCCTCTAACCTAATCGACCTCGACCTCGCCACCGTATCCCTCACCGGTCCCTTGCCGGACATTTTCGACAAATTCCCTTCCCTTCAACACCTTCGCCTCTCTTACAACAACCTCACCGGCAATTTACCCTCCTCTTTCTCCGCCGCCAACAATCTCGAAACGCTCTGGCTCAACAACCAGGCCGCCGGCTTGTCCGGTACCCTCCTCGTCCTCTCCAACATGTCTGCATTAAACCAGTCCTGGCTCAATAAGAACCAGTTCACCGGTTCCATACCGGATTTATCGCAATGCACGGCTTTGTCTGACTTGCAGCTCAGGGATAACCAGTTAACTGGTGTGGTTCCCGCTTCATTGACAAGTCTTCCTAGTTTGAAGAAAGTTTCTCTGGATAATAATGAGCTTCAGGGGCCTGTGCCCGTGTTTGGGAAAGGTGTGAATGTTACTCTCGATGGGATTAATAGTTTTTGTCTTGATACTCCTGGGAATTGTGATCCCAGGGTGATGGTTTTGCTGCAGATTGCCGAGGCATTCGGGTATCCAATTCGGTCGGCAGAGTCGTGGAAGGGGAATGATCCGTGTGATGGTTGGAACTATGTTGTGTGTGCTGCCGGAAAGATTATTACTGTCAATTTCGAGAAACAGGGTTTGCAGGGTACCATCTCCCCTGCATTTGCCAATTTGACTGACTTGAGGACTTTGTTTCTCAATGGCAATAATTTGATCGGTTCTATACCTGATAGTTTGATCACTTTGCCTCAGCTTCAGACTCTTGATGTGTCTGACAACAACCTCTCTGGATTGGTTCCTAAGTTCCCACCAAAGGTGAAGTTGGTGACTGCGGGAAATGCTTTGCTTGGGAAACCCCTTAGTCCTGGAGGTGGACCAAGTGGAACTACTCCTTCTGGGTCTTCGACCGGTGGAAGTGGTGGTGAATCCTCAAAGGGTAATTCTTCGGTGTCGCCAGGTTGGATTGCTGGTATAGTTGTTATTGTGTTGTTTTTTATTGCAGTGGTGTTGTTTGTGTCTTGGAAGTGTTTTGTCAACAAGCTGCAGGGGAAGTTCAGTAGGGTTAAAGGTCATGAAAATGGGAAAGGAGGCTTTAAACTTGATGCTGTCCATGTTTCTAATGGATATGGTGGTGTTCCAGTTGAGTTGCAAAGCCAGAGCAGTGGTGATCGCAGTGACCTTCATGCTTTAGATGGTCCAACATTTTCTATCCAAGTTCTTCGACAAGTGACGAATAATTTCAGCGAGGAGAACATTTTAGGCAGGGGAGGGTTTGGAGTAGTTTATAAGGGGGTGTTGCATGATGGAACAAAAATTGCTGTTAAGAGGATGGAATCTGTTGCAATGGGGAACAAAGGTCAGAAAGAGTTCGAAGCAGAGATTGCACTTCTTAGTAAAGTTAGGCATAGACATTTGGTTGCTCTTCTAGGGTATTGCATCAATGGCAATGAAAGGCTTTTGGTGTATGAGTATATGCCTCAAGGTACATTAACACAGCACCTGTTTGAGTGGCAGGAGCATGGGTATGCTCCTTTGACTTGGAAGCAAAGGGTAGTAATAGCTTTGGATGTAGCGCGGGGGGTGGAATACTTGCACAGTTTAGCTCAGCAAAGCTTCATTCATAGAGACTTAAAACCCTCAAACATACTACTAGGCGATGACATGAGAGCAAAGGTTGCTGATTTTGGGTTGGTTAAAAATGCACCAGATGGGAAGTATTCTGTTGAGACACGGTTGGCTGGAACATTTGGATATCTTGCACCTGAGTATGCAGCTACTGGAAGAGTGACAACCAAAGTGGATGTTTATGCATTTGGAGTAGTTCTGATGGAACTTATCACCGGTAGAAAGGCATTGGATGATACTGTGCCAGATGAAAGGTCTCACTTGGTGACATGGTTCCGTAGGGTACTAATTAACAAGGAAAACATTCCAAAGGCAATTGATCAAATTCTCAATCCAGATGAGGAAACCATGGGAAGCATATATACAGTGGCCGAGCTGGCAGGCCATTGCACTGCTCGCGAACCATACCAAAGGCCGGATATGGGTCATGCAGTGAACGTCTTGGTTCCTCTTGTGGAGCAATGGAAACCTACTAGCCATGATGAAGAAGAGGAAGACGGCTCTGGCGGTGACCTTCATATGAGCCTTCCTCAAGCTCTACGAAGGTGGCAAGCCAACGAAGGCACTTCCTCAATATTTAATGACATTTCCATCTCACAAACCCAATCAAGCATCTCCTCTAAACCTGCAGGGTTTGCAGACTCCTTTGATTCAATGGATTGCCGTTAA

>Glyma08g11350.1   sequence type=predicted peptide   gene model=Glyma08g11350   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTRQRLLSKNKKHCLIHLFVFRSFTTALLLLSSTNLLPSLLHNTSHQPKFNTSLSLSLTQTLLPTLMSLPKTLLSLFLLLTIPLVTADDAAVMSNFLKSLTPPPSGWSETTPFCQWKGIQCDSSSHVTSISLASHSLTGTLPSDLNSLSQLRTLSLQDNSLTGTLPSLSNLSFLQTVYLNRNNFSSVSPTAFASLTSLQTLSLGSNPALQPWSFPTDLTSSSNLIDLDLATVSLTGPLPDIFDKFPSLQHLRLSYNNLTGNLPSSFSAANNLETLWLNNQAAGLSGTLLVLSNMSALNQSWLNKNQFTGSIPDLSQCTALSDLQLRDNQLTGVVPASLTSLPSLKKVSLDNNELQGPVPVFGKGVNVTLDGINSFCLDTPGNCDPRVMVLLQIAEAFGYPIRSAESWKGNDPCDGWNYVVCAAGKIITVNFEKQGLQGTISPAFANLTDLRTLFLNGNNLIGSIPDSLITLPQLQTLDVSDNNLSGLVPKFPPKVKLVTAGNALLGKPLSPGGGPSGTTPSGSSTGGSGGESSKGNSSVSPGWIAGIVVIVLFFIAVVLFVSWKCFVNKLQGKFSRVKGHENGKGGFKLDAVHVSNGYGGVPVELQSQSSGDRSDLHALDGPTFSIQVLRQVTNNFSEENILGRGGFGVVYKGVLHDGTKIAVKRMESVAMGNKGQKEFEAEIALLSKVRHRHLVALLGYCINGNERLLVYEYMPQGTLTQHLFEWQEHGYAPLTWKQRVVIALDVARGVEYLHSLAQQSFIHRDLKPSNILLGDDMRAKVADFGLVKNAPDGKYSVETRLAGTFGYLAPEYAATGRVTTKVDVYAFGVVLMELITGRKALDDTVPDERSHLVTWFRRVLINKENIPKAIDQILNPDEETMGSIYTVAELAGHCTAREPYQRPDMGHAVNVLVPLVEQWKPTSHDEEEEDGSGGDLHMSLPQALRRWQANEGTSSIFNDISISQTQSSISSKPAGFADSFDSMDCR*







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