Glyma08g11220 - SoyBase

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Report for Sequence Feature Glyma08g11220

Feature Type:	gene_model
Chromosome:	Gm08
Start:	8204662
stop:	8211523
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g11220

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G27270	AT	Annotation by Michelle Graham. TAIR10: Tetratricopeptide repeat (TPR)-like superfamily protein \| chr5:9605650-9609625 FORWARD LENGTH=1038	SoyBase	E_val: 0	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
PTHR24015	Panther	FAMILY NOT NAMED	JGI		ISS
PF01535	PFAM	PPR repeat	JGI		ISS
UniRef100_D7M672	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Pentatricopeptide repeat-containing protein n=1 Tax=Arabidopsis lyrata subsp. lyrata RepID=D7M672_ARALL	SoyBase	E_val: 0	ISS
UniRef100_I1KS45	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KS45_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma08g11220

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma08g11220 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g106500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g11220

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma08g11220

Limit To All Plant Sequences

>Glyma08g11220.1   sequence type=CDS   gene model=Glyma08g11220   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGTGTTTGAAATCCCCCTTCCTCTTCTCCACTTCACTTCTCCCTCCACCTTCTCATCAACCCTACTCCATTACGCCAAACATAAAGAACAAGAAGAATAAGAAACCTCGAGTTCCCATCTTCATTCGCTGCACCATCCAGCGCGACCCGTGGTCCCCGACTTCCGGCGACCCCACCCGACCCAAGCCTCGGAGTCGGAACCCGAAGAAGCCGCTGTCCGACGACAACGCGAGGCGCATCATAAAGGGAAAGGCGGCGTACCAGAGCATCCTGCGGCGGAACCAGGGCCCGCAGGCTCAGACCCCGAGGTGGATTAAGAGGACCCCCGAGCAGATGGTGCGGTACCTGCAGGATGACCGCAACGGCCAATTGTACGGCAGACACGTCCTCGCCGCGGTTAAGAAAGTGCGCTCTCTCTCTCAGAGAGTCGACGGCGACTACGACATGAGGATGGTGATGGCTTCGTTTGTGGGCAAGCTCAGCTTCAAGGAGATGTGCGTTGTGCTCAAGGAGCAGAAGGGGTGGAGGCAAGTCAGAGACTTCTTTGCTTGGATGAAATTGCAGCTGAGCTACCGTCCAAGTGTAATTGTCTACACAATAGTTTTGCGCCTATATGGGCAAGTTGGAAAGCTGAAACTGGCTGAGGAGATCTTCTTGGAGATGCTTGATGTAGGTTGTGAGCCAGATGAAGTTGCTTGTGGTACCATGCTTTGTTCGTATGCCAGATGGGGACGTCATAAGGCTATGCTGTCTTTTTATTCTGCTATAAAAGAAAGGGGAATAATTCTTTCTGTTGCTGTCTTCAACTTTATGATGTCTTCTTTGCAAAAGAAATCACTCCATAGAGAGGTTGTACATGTGTGGAAGGATATGCTAGGAAAAGGGGTGATACCTAATAATTTTACTTATACAGTGGCCATCAGCTCATTCGTCAAAGAAGGGCTGCACGAAGATGCTTTCAAGACTTTTGATGAGATGAGGAATTATGGAGTTGTTCCTGAGGAGTTAACTTATAGTCTGCTTATAAATTTAAATGCTAAAAGTGGCAACAGAGATGAAGTGCAAAGACTGTATGAGGACATGAGGTTTCGAGGAATAATTCCCAGTAATTACACTTGTGCTTCTCTTCTATCTTTGTATTACAAATATGAGGATTACCCTAGAGCCCTCTCCCTTTTTTCAGAAATGGTACGCAATAAAATTTCCACTGATGAAGTCATATATGGTTTGCTTATAAGAATTTATGGAAAGCTTGGTTTATACGAGGATGCTCACAAAACATTTGAAGAGACAAAGAACCGAGGGCAGCTCACCAGTGAGAAAACATATTTGGCAATGGCACAAGTCCATCTTACTTCAGGAAATGTAGACAAGGCCTTGGAAGTTATTGAACTCATGAAGTCTAGCAATCTATGGTTCTCTCGATTTGCTTATATTGTGCTGCTGCAGTGTTATGTGATGAAAGAAGATGTAGCATCTGCTGAAGGAACATTTCTAGCTCTCTCCAAGACAGGACCACCTGATGCTGGCTCCTGTAATGATATGCTCAGTCTGTACATGGGACTTAATTTGACGAATAAGGCCAAGGAGTTCATTGTCCAAATAAGGGAGAATGAGACAAATTTTGACAAGGAGCTTTATAGAACAGTTATGAAGGTTTATTGTAAGGAGGGAATGCTGCCAGAAGCTGAGCAGTTGACAAATCAGATGGTTAAGACTGAATATTTTAAAAATGACAAATTCTTCATGACATTTTATTGGATTCTTTGTGAACATAAGGGGGATATGGAATCTGATGATGAACTTGTGGCCATTGAGCCCATTGACAAATTTAACGCTACAGCTCTTGGGCTGATGCTCAGTTTATATCTGGCAAATGGCAACTTCAACAAGACAAAAATATTACTGAAACTGTTGTTGGGTTATGCTGCTGGGGGATCAAAAATTGTTAGTCAGCTCATCATCAACTTGTCTAAAGAAGGAGAAATCAGTAAAGCAGAATTGCTTAACCATCAATTAACTAAGCTTGGCTGCAGAATGGATGAAGCCACTGTAGCTTCTCTAATTAGCCATTATGGCAAACAACAAATGCTGAAACAAGCTGAAGATATTTTTGCAGAATATATAAATTCTCCCACATCTAGTAAAGTGCTTTATAACTCTATGATCAATGCATATGCCAAATGTGGTAAACAAGAGAAAGCATATTTATTATACAAGCAAGCAACAGGGGAAGGACGTGATTTGGGTGCTGTTGGAATTAGCATCGCTGTAAATTCTTTGACCAATGGAGGAAAACATCAGGAGGCAGAGAATATTGTCCAAAGGAGTCTTGAAGAAAACTTGGAGCTTGACACTGTGGCTTACAATACCTTTATCAAAGCCATGCTTGAAGCAGGCAAATTGCATTTTGCATCCAGCATTTTTGAGCACATGATTTCCTCCGGTGTTGCTCCATCAATTGAAACATTCAACACAATGATAAGTGTCTATGGACAAGACCAAAAGTTGGATAGAGCAGTTGAGATGTTCAACCAAGCTAGCTCATGCAGTGTCCCTTTGGATGAAAAAACATACATGAATTTGATTGGCTATTATGGGAAAGCTGGTTTGATGCTTGAAGCATCACAGCTGTTCAGTAAAATGCAGGAAGGAGGTATAAAACCCGGAAAGGTCAGTTATAATATCATGATCAATGTATATGCTAATGCTGGAGTTCTTCATGAAACGGAGAAACTTTTCCATACCATGCAGAGGCAAGGTTATTTGCCTGATTCTTTCACGTATCTTTCCCTTGTCCAAGCATATACGAGGAGCCTGAATTATTCTAAAGCCGAGGAAACCATACATGCTATGCAAAGCAAAGGCATTCCACCATCTTGTGTCCATTTTAATATTTTACTCCACGCTTTCATAAAAGCTGGATTGATTCATGAAGCCAAGAGGGTTTATGAGGATCTATCAACTTTTGGTTTAGTTCCTGATCTTGTATGTCATCGAACAATGCTGAATGGTTACCTGAAATGTGGATATGTGGAAGAAGGAATCAACTTTTTTGAAAGTATATGTGAATCAACAAAAAGTGACAGGTTCATTATGAGTGCAGCTGTGCATTTTTACAAATCTGCTGGAAAGGGAAGGCAAGCTAAAGAAATATTAAATTTAATGAACAACATGGGGATCCCATTCCTCAAGAAACTTGAAGTTGGATCAGGAGAGAGAGTGAAAACTCCATGA

Predicted protein sequences of Glyma08g11220

Limit To All Plant Sequences

>Glyma08g11220.1   sequence type=predicted peptide   gene model=Glyma08g11220   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MECLKSPFLFSTSLLPPPSHQPYSITPNIKNKKNKKPRVPIFIRCTIQRDPWSPTSGDPTRPKPRSRNPKKPLSDDNARRIIKGKAAYQSILRRNQGPQAQTPRWIKRTPEQMVRYLQDDRNGQLYGRHVLAAVKKVRSLSQRVDGDYDMRMVMASFVGKLSFKEMCVVLKEQKGWRQVRDFFAWMKLQLSYRPSVIVYTIVLRLYGQVGKLKLAEEIFLEMLDVGCEPDEVACGTMLCSYARWGRHKAMLSFYSAIKERGIILSVAVFNFMMSSLQKKSLHREVVHVWKDMLGKGVIPNNFTYTVAISSFVKEGLHEDAFKTFDEMRNYGVVPEELTYSLLINLNAKSGNRDEVQRLYEDMRFRGIIPSNYTCASLLSLYYKYEDYPRALSLFSEMVRNKISTDEVIYGLLIRIYGKLGLYEDAHKTFEETKNRGQLTSEKTYLAMAQVHLTSGNVDKALEVIELMKSSNLWFSRFAYIVLLQCYVMKEDVASAEGTFLALSKTGPPDAGSCNDMLSLYMGLNLTNKAKEFIVQIRENETNFDKELYRTVMKVYCKEGMLPEAEQLTNQMVKTEYFKNDKFFMTFYWILCEHKGDMESDDELVAIEPIDKFNATALGLMLSLYLANGNFNKTKILLKLLLGYAAGGSKIVSQLIINLSKEGEISKAELLNHQLTKLGCRMDEATVASLISHYGKQQMLKQAEDIFAEYINSPTSSKVLYNSMINAYAKCGKQEKAYLLYKQATGEGRDLGAVGISIAVNSLTNGGKHQEAENIVQRSLEENLELDTVAYNTFIKAMLEAGKLHFASSIFEHMISSGVAPSIETFNTMISVYGQDQKLDRAVEMFNQASSCSVPLDEKTYMNLIGYYGKAGLMLEASQLFSKMQEGGIKPGKVSYNIMINVYANAGVLHETEKLFHTMQRQGYLPDSFTYLSLVQAYTRSLNYSKAEETIHAMQSKGIPPSCVHFNILLHAFIKAGLIHEAKRVYEDLSTFGLVPDLVCHRTMLNGYLKCGYVEEGINFFESICESTKSDRFIMSAAVHFYKSAGKGRQAKEILNLMNNMGIPFLKKLEVGSGERVKTP*

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