SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G67320 | AT | Annotation by Michelle Graham. TAIR10: DNA primase, large subunit family | chr1:25205520-25208966 REVERSE LENGTH=454 | SoyBase | E_val: 0 | ISS |
| GO:0006260 | GO-bp | Annotation by Michelle Graham. GO Biological Process: DNA replication | SoyBase | N/A | ISS |
| GO:0006261 | GO-bp | Annotation by Michelle Graham. GO Biological Process: DNA-dependent DNA replication | SoyBase | N/A | ISS |
| GO:0006269 | GO-bp | Annotation by Michelle Graham. GO Biological Process: DNA replication, synthesis of RNA primer | SoyBase | N/A | ISS |
| GO:0006270 | GO-bp | Annotation by Michelle Graham. GO Biological Process: DNA replication initiation | SoyBase | N/A | ISS |
| GO:0006275 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of DNA replication | SoyBase | N/A | ISS |
| GO:0006306 | GO-bp | Annotation by Michelle Graham. GO Biological Process: DNA methylation | SoyBase | N/A | ISS |
| GO:0008283 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cell proliferation | SoyBase | N/A | ISS |
| GO:0051567 | GO-bp | Annotation by Michelle Graham. GO Biological Process: histone H3-K9 methylation | SoyBase | N/A | ISS |
| GO:0051726 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of cell cycle | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0009506 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma | SoyBase | N/A | ISS |
| GO:0003896 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: DNA primase activity | SoyBase | N/A | ISS |
| GO:0016779 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleotidyltransferase activity | SoyBase | N/A | ISS |
| KOG2267 | KOG | Eukaryotic-type DNA primase, large subunit | JGI | ISS | |
| PTHR10537 | Panther | DNA PRIMASE LARGE SUBUNIT | JGI | ISS | |
| PF04104 | PFAM | Eukaryotic and archaeal DNA primase, large subunit | JGI | ISS | |
| UniRef100_B9RMC0 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: DNA primase large subunit, putative n=1 Tax=Ricinus communis RepID=B9RMC0_RICCO | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI0002337FB1 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI0002337FB1 related cluster n=1 Tax=unknown RepID=UPI0002337FB1 | SoyBase | E_val: 0 | ISS |
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Glyma08g11130 not represented in the dataset |
Glyma08g11130 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma05g28150 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.08g105600 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma08g11130.1 sequence type=CDS gene model=Glyma08g11130 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAGATCGTTCGTCCTCAGAATCGCAGAAACTCGTTTTCCTCTTCCAATGACGCCGTTTCTGCTCCCACCATTCCCCTCTATCGCTCTGCTCCCCCACTCGAAGTCAGGCTCGAGGATTTCGAGTCCTTCGCCATCGATCGCCTCCGAGTTCTCAAGGGGATTTCTGATGGTATGTCGCGTGGAAAAAAATCGGAAGAAATGGAGAATTTGGTAAAGGACCTGTGGAAAATGAATATGAGACATCAAGACGCATCTCAGGTTCTGAACAAGGATATTATATCACATTTTGTTCTACGTCTGGTGTATTGCAGAACGGAGGACTTGAGGAAATGGTTTCTTTCCACGGAATCTGCACTCTTTCGCTACCGTTTTCGCCTTCTGAATGCTGAAGCTCAGAGAGCAGTCATGGAAGAATTTGACCTTCCTTACAAGGCCGTTAGCAATGTGGAATTTGAGAGCATAAAAGAGAAATTGGGACAAGTTGCACGTTCTATGGGTCAGCCTTCGCCTACTGCAGATGCTATCTTCTACAAGGTACCATTTGAAGAAGTTCCAGAGCTTGTTGCTGGACGGAAGGTGTTTATAAATCAAGGATATGCATATGTTGCAATGAATCAGATTGTTTCACTTGTAGCCACACTATTCCGTAGTCAACTGTCAAAGGCACTAATCCTTACAAACAGAAAATGGACATCTTCAGTTAGAGAGCAAGAGAAACATAGGTTGACTCCTATTGTGGAAGCCCTGTCCTCAAGTTATCTGGGTCCTGATTATTCTCAGTCAAAAGAATATGCTGATATATCATTAAAGGACATTGATCAAGTTGCCAAGAGCTCATTTCCTTTGTGCATGCGTCACCTATTTGATAAGCTGAAAGAGGATCATCATTTAAAGCATGGAGGGAGGATGCAACTAGGCCTCTTTCTGAAGGGTGTTGGCATAAATCTGGATGATGCACTTGCGTTTTGGAGGTCAGAGTTCTCTAAAAAGGTTGGTTTGGAGAAGTTTGAGAAACAATATGCATACAACATACGCCATAATTATGGAAAGGAAGGGAAGAGAACTGACTACACTCCCTATTCTTGTCAAAAGATTATTTCATCAACTCCTGGAGCTGGAGATCATCATGGTTGCCCTTATCGAAATTTCAGTGAAGAGAATCTAAGAGCTGCTCTCAGCAGAATGGGGGTAAACAGTTGGGCAATGGAAGATGTGATGGACAAAGTGAAAAATAGACATTATCAGTTGGCTTGCACCTTGACATTTGAAGCTCTTCATGGCATGACGTGTGATGCAGGGATTAACCATCCAAATCAATACTTCAGTGACAGTCAAAAGATATTAAAGCCAAAGAAGGATTCTTCAGCCTAA
>Glyma08g11130.1 sequence type=predicted peptide gene model=Glyma08g11130 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MEIVRPQNRRNSFSSSNDAVSAPTIPLYRSAPPLEVRLEDFESFAIDRLRVLKGISDGMSRGKKSEEMENLVKDLWKMNMRHQDASQVLNKDIISHFVLRLVYCRTEDLRKWFLSTESALFRYRFRLLNAEAQRAVMEEFDLPYKAVSNVEFESIKEKLGQVARSMGQPSPTADAIFYKVPFEEVPELVAGRKVFINQGYAYVAMNQIVSLVATLFRSQLSKALILTNRKWTSSVREQEKHRLTPIVEALSSSYLGPDYSQSKEYADISLKDIDQVAKSSFPLCMRHLFDKLKEDHHLKHGGRMQLGLFLKGVGINLDDALAFWRSEFSKKVGLEKFEKQYAYNIRHNYGKEGKRTDYTPYSCQKIISSTPGAGDHHGCPYRNFSEENLRAALSRMGVNSWAMEDVMDKVKNRHYQLACTLTFEALHGMTCDAGINHPNQYFSDSQKILKPKKDSSA*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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