Glyma08g11030 - SoyBase

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Report for Sequence Feature Glyma08g11030

Feature Type:	gene_model
Chromosome:	Gm08
Start:	8058634
stop:	8062620
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g11030

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G27340	AT	Annotation by Michelle Graham. TAIR10: Galactose oxidase/kelch repeat superfamily protein \| chr1:9495741-9497857 FORWARD LENGTH=467	SoyBase	E_val: 0	ISS
GO:0010305	GO-bp	Annotation by Michelle Graham. GO Biological Process: leaf vascular tissue pattern formation	SoyBase	N/A	ISS
GO:0010928	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of auxin mediated signaling pathway	SoyBase	N/A	ISS
GO:0060776	GO-bp	Annotation by Michelle Graham. GO Biological Process: simple leaf morphogenesis	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
PF00646	PFAM	F-box domain	JGI		ISS
UniRef100_B8Y9B5	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: F-box family protein n=1 Tax=Citrus trifoliata RepID=B8Y9B5_PONTR	SoyBase	E_val: 0	ISS
UniRef100_I1KS26	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KS26_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma08g11030

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g11030

Paralog	Evidence	Comments
Glyma05g28050	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g11030 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g104800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g11030

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma08g11030

Limit To All Plant Sequences

>Glyma08g11030.4   sequence type=transcript   gene model=Glyma08g11030   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTAAACATAAAAGAAAAAAAAACTTTTTTTGACCGGTATGGTAACGAAAATGTAGTTAAAGTGGCACACGGGTGGGTGAGTAAAACTCCGTCCTGTGTGGAAAATGAAGAGAGAGGAGAATTGAGTTGGGTTGGGGGCATGGAAGAAGAAGAAGAAGGGCTTGCCATGCTCATCACTCACCTTCACCATTTCTCTCACTCTCTTTCTCCTCTCTTTTTTACCCTTCACCCTCCTCTACTCTCTCATCAACTCCCCAGATTGTCCTTCTTTGACATTGATGATTACTCCTTAGATGACTTCTGTGGCCTTGTAATGGCAGCTGGAAAGTCTGGAAGTTCCAGGATGTTGGAGCCTCTAAAGCATCCATCTAAGAAGTCTCGAAGAGATAGGAGCCTTGGAAAATCATCTGGAAGGTCCTCCAGGGATGAAGCTATGGAACAACAAATTTGGAAAAAATTGCCTGAGGATCTATTTGAGCCTGTGATTGCACGACTTCCCATTGCCACATTTTTCTGCTTCCGCTCTGTATGCCAGCGATGGAATTCCTTGCTGACTTCTCAAAGTTTTTCTCAGCATTGTGCTCAAGTCCCACAAGCAAACCCATGGTTTTACACCGTAACTCATGAACATGCAAATTCCGGAGCCATGTATGACCCTTCTATGAAGAAGTGGTATCATCCCACTATATCAACACTGCCCGCAGAGTTGATAGTTTTGCCAGTGGCTTCTGCAGGGGGTCTAGTTTGCTTTCTTGACATTTATCGTCAAAATTTCTATGTTTGTAACCCATTGACTCAATCCTTAAAGGAGTTACCAGCTCGTTCAGTTAGGGTTGGGTCTCGTGCGTCTGTAGGGATGACAGTAAATGGAAACTCAACTAGTGCTGGCTACAAGATCCTATTAGTTGGTTGTGATGGAGAATATGAAATTTATGACTCAGTGACAAAGTCTTGGAGCCATCCAGAAAACATGCCTGCAGATATTAAGCTCCCGCTGTCACTCAATTTTAGGTCACAGGCCGTTTCTATTGACAGCACCCTGTACTTCATGCATTCAGATCCCGAAGGGATTGTTTTGTATGATATGGCAACTGGGGTTTGGACGCAGTACATAATCCCAGCACCATTGCATCTGACTGACCACATGCTGGCTGAGTGCGATGGCCGGATATTGCTTGTGGGGTTGCTCACGAAGAATGCAGCCACATGTATATGCATATGGGAGCTGCAGAAGATGACTTTCTTGTGGAAGGAGGTTGACAGAATGCCAAACGTCTGGTGCTTGGACTTTTATGGGAAGCACGTTAGAATGACTTGCTTGGGAAACAAAGGCTTGCTGATGTTATCCTTGAGATCAAGACAAATGAATCGATTGGTTACTTACAACATAGCAAGTAGGGAATGGGTGAAGGTTCCTGCGTGTCTGGTGCCACATGGAAGAAAACGACAATGGGTAGCACATGGTACTGCATTTTATCCATGCCTCACTGCAATGGCTTGATTTAGCTTTTATAATACAGGTATACACTATACAGGAATAGCCTGAGAAAATTTCCCTCACAACCTGAGGTTCTTTTCAATTTGCTGGTCATTGATGCTGATGTAGGAATAATAATGTTCATTGCTGTTTAACAAAGCAGATGGAAAACGATACGAGTTTGTAGTACTTCATGTATTCTTCATGCTCTCAAGCATGCACCTCAGTCACCTTGCTTTCAAGACTTTTCCCTGTATATGGAAGTTGTGAAGGTTAAATTCCAGTTACTATCATTCATGTTTTCAAGCTGGAAGGTCCAAACTGGGGTTGGCTCTACCAACTAGAATTTAAGACTTAAGCAGAAATTCATTCAGAATTGAAGCCTGATGAGTCAGGGGAGAGGCATTTGAAGAGCCTAAAATGTTCTCAACCTGGCCTTGCAGTCTGGTGTCACTTGTCTGCCTCATGCTGAACCCTTGTTGCTCTTTCTGTCCTGCATTATATAATATATAACGTCATGTTTCTACAGAAATTTGTGAACTTCAAAAAGCTGTGTTCTTTGTTCCACACTTGTGCTGTGACTGCTGTCTGCTAAGTGCAAACGATGGCATTTCTCAGGTTTCTTACAGCGTCACACGGGGAAGAAGCTGGGATTTCAATTTCGATGGCTCCCCCCAACTACTCGATGTAGTACCCTTCAAGTGAAGGTCATTCGAATTTTACGGCTTATGATTGTTGTCTCTGTTTTCAGACAGTGGGAACGATGAATCAACCACTATGATCTTTACTTTGCAAAATACAGATAATTTAATTGCGTTTGATCGCAGAATAGAGATTTCGATATGTTTCGCTAGTCAAAACTCAAAAGATAAAGAAGAGT

Coding sequences of Glyma08g11030

Limit To All Plant Sequences

>Glyma08g11030.3   sequence type=CDS   gene model=Glyma08g11030   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTAAACATAAAAGAAAAAAAAACTTTTTTTGACCGGTATGGTAACGAAAATGTAGTTAAAGTGGCACACGGGTGGGTGAGTAAAACTCCGTCCTGTGTGGAAAATGAAGAGAGAGGAGAATTGAGTTGGGTTGGGGGCATGGAAGAAGAAGAAGAAGGGCTTGCCATGCTCATCACTCACCTTCACCATTTCTCTCACTCTCTTTCTCCTCTCTTTTTTACCCTTCACCCTCCTCTACTCTCTCATCAACTCCCCAGATTGTCCTTCTTTGACATTGATGATTACTCCTTAGATGACTTCTGTGGCCTTGTAATGGCAGCTGGAAAGTCTGGAAGTTCCAGGATGTTGGAGCCTCTAAAGCATCCATCTAAGAAGTCTCGAAGAGATAGGAGCCTTGGAAAATCATCTGGAAGGTCCTCCAGGGATGAAGCTATGGAACAACAAATTTGGAAAAAATTGCCTGAGGATCTATTTGAGCCTGTGATTGCACGACTTCCCATTGCCACATTTTTCTGCTTCCGCTCTGTATGCCAGCGATGGAATTCCTTGCTGACTTCTCAAAGTTTTTCTCAGCATTGTGCTCAAGTCCCACAAGCAAACCCATGGTTTTACACCGTAACTCATGAACATGCAAATTCCGGAGCCATGTATGACCCTTCTATGAAGAAGTGGTATCATCCCACTATATCAACACTGCCCGCAGAGTTGATAGTTTTGCCAGTGGCTTCTGCAGGGGGTCTAGTTTGCTTTCTTGACATTTATCGTCAAAATTTCTATGTTTGTAACCCATTGACTCAATCCTTAAAGGAGTTACCAGCTCGTTCAGTTAGGGTTGGGTCTCGTGCGTCTGTAGGGATGACAGTAAATGGAAACTCAACTAGTGCTGGCTACAAGATCCTATTAGTTGGTTGTGATGGAGAATATGAAATTTATGACTCAGTGACAAAGTCTTGGAGCCATCCAGAAAACATGCCTGCAGATATTAAGCTCCCGCTGTCACTCAATTTTAGGTCACAGGCCGTTTCTATTGACAGCACCCTGTACTTCATGCATTCAGATCCCGAAGGGATTGTTTTGTATGATATGGCAACTGGGGTTTGGACGCAGTACATAATCCCAGCACCATTGCATCTGACTGACCACATGCTGGCTGAGTGCGATGGCCGGATATTGCTTGTGGGGTTGCTCACGAAGAATGCAGCCACATGTATATGCATATGGGAGCTGCAGAAGATGACTTTCTTGTGGAAGGAGGTTGACAGAATGCCAAACGTCTGGTGCTTGGACTTTTATGGGAAGCACGTTAGAATGACTTGCTTGGGAAACAAAGGCTTGCTGATGTTATCCTTGAGATCAAGACAAATGAATCGATTGGTTACTTACAACATAGCAAGTAGGGAATGGGTGAAGGTTCCTGCGTGTCTGGTGCCACATGGAAGAAAACGACAATGGGTAGCACATGGTACTGCATTTTATCCATGCCTCACTGCAATGGCTTGA

>Glyma08g11030.4   sequence type=CDS   gene model=Glyma08g11030   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTAAACATAAAAGAAAAAAAAACTTTTTTTGACCGGTATGGTAACGAAAATGTAGTTAAAGTGGCACACGGGTGGGTGAGTAAAACTCCGTCCTGTGTGGAAAATGAAGAGAGAGGAGAATTGAGTTGGGTTGGGGGCATGGAAGAAGAAGAAGAAGGGCTTGCCATGCTCATCACTCACCTTCACCATTTCTCTCACTCTCTTTCTCCTCTCTTTTTTACCCTTCACCCTCCTCTACTCTCTCATCAACTCCCCAGATTGTCCTTCTTTGACATTGATGATTACTCCTTAGATGACTTCTGTGGCCTTGTAATGGCAGCTGGAAAGTCTGGAAGTTCCAGGATGTTGGAGCCTCTAAAGCATCCATCTAAGAAGTCTCGAAGAGATAGGAGCCTTGGAAAATCATCTGGAAGGTCCTCCAGGGATGAAGCTATGGAACAACAAATTTGGAAAAAATTGCCTGAGGATCTATTTGAGCCTGTGATTGCACGACTTCCCATTGCCACATTTTTCTGCTTCCGCTCTGTATGCCAGCGATGGAATTCCTTGCTGACTTCTCAAAGTTTTTCTCAGCATTGTGCTCAAGTCCCACAAGCAAACCCATGGTTTTACACCGTAACTCATGAACATGCAAATTCCGGAGCCATGTATGACCCTTCTATGAAGAAGTGGTATCATCCCACTATATCAACACTGCCCGCAGAGTTGATAGTTTTGCCAGTGGCTTCTGCAGGGGGTCTAGTTTGCTTTCTTGACATTTATCGTCAAAATTTCTATGTTTGTAACCCATTGACTCAATCCTTAAAGGAGTTACCAGCTCGTTCAGTTAGGGTTGGGTCTCGTGCGTCTGTAGGGATGACAGTAAATGGAAACTCAACTAGTGCTGGCTACAAGATCCTATTAGTTGGTTGTGATGGAGAATATGAAATTTATGACTCAGTGACAAAGTCTTGGAGCCATCCAGAAAACATGCCTGCAGATATTAAGCTCCCGCTGTCACTCAATTTTAGGTCACAGGCCGTTTCTATTGACAGCACCCTGTACTTCATGCATTCAGATCCCGAAGGGATTGTTTTGTATGATATGGCAACTGGGGTTTGGACGCAGTACATAATCCCAGCACCATTGCATCTGACTGACCACATGCTGGCTGAGTGCGATGGCCGGATATTGCTTGTGGGGTTGCTCACGAAGAATGCAGCCACATGTATATGCATATGGGAGCTGCAGAAGATGACTTTCTTGTGGAAGGAGGTTGACAGAATGCCAAACGTCTGGTGCTTGGACTTTTATGGGAAGCACGTTAGAATGACTTGCTTGGGAAACAAAGGCTTGCTGATGTTATCCTTGAGATCAAGACAAATGAATCGATTGGTTACTTACAACATAGCAAGTAGGGAATGGGTGAAGGTTCCTGCGTGTCTGGTGCCACATGGAAGAAAACGACAATGGGTAGCACATGGTACTGCATTTTATCCATGCCTCACTGCAATGGCTTGA

Predicted protein sequences of Glyma08g11030

Limit To All Plant Sequences

>Glyma08g11030.3   sequence type=predicted peptide   gene model=Glyma08g11030   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVNIKEKKTFFDRYGNENVVKVAHGWVSKTPSCVENEERGELSWVGGMEEEEEGLAMLITHLHHFSHSLSPLFFTLHPPLLSHQLPRLSFFDIDDYSLDDFCGLVMAAGKSGSSRMLEPLKHPSKKSRRDRSLGKSSGRSSRDEAMEQQIWKKLPEDLFEPVIARLPIATFFCFRSVCQRWNSLLTSQSFSQHCAQVPQANPWFYTVTHEHANSGAMYDPSMKKWYHPTISTLPAELIVLPVASAGGLVCFLDIYRQNFYVCNPLTQSLKELPARSVRVGSRASVGMTVNGNSTSAGYKILLVGCDGEYEIYDSVTKSWSHPENMPADIKLPLSLNFRSQAVSIDSTLYFMHSDPEGIVLYDMATGVWTQYIIPAPLHLTDHMLAECDGRILLVGLLTKNAATCICIWELQKMTFLWKEVDRMPNVWCLDFYGKHVRMTCLGNKGLLMLSLRSRQMNRLVTYNIASREWVKVPACLVPHGRKRQWVAHGTAFYPCLTAMA*

>Glyma08g11030.4   sequence type=predicted peptide   gene model=Glyma08g11030   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVNIKEKKTFFDRYGNENVVKVAHGWVSKTPSCVENEERGELSWVGGMEEEEEGLAMLITHLHHFSHSLSPLFFTLHPPLLSHQLPRLSFFDIDDYSLDDFCGLVMAAGKSGSSRMLEPLKHPSKKSRRDRSLGKSSGRSSRDEAMEQQIWKKLPEDLFEPVIARLPIATFFCFRSVCQRWNSLLTSQSFSQHCAQVPQANPWFYTVTHEHANSGAMYDPSMKKWYHPTISTLPAELIVLPVASAGGLVCFLDIYRQNFYVCNPLTQSLKELPARSVRVGSRASVGMTVNGNSTSAGYKILLVGCDGEYEIYDSVTKSWSHPENMPADIKLPLSLNFRSQAVSIDSTLYFMHSDPEGIVLYDMATGVWTQYIIPAPLHLTDHMLAECDGRILLVGLLTKNAATCICIWELQKMTFLWKEVDRMPNVWCLDFYGKHVRMTCLGNKGLLMLSLRSRQMNRLVTYNIASREWVKVPACLVPHGRKRQWVAHGTAFYPCLTAMA*

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