SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G27385 | AT | Annotation by Michelle Graham. TAIR10: unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF493 (InterPro:IPR007454); Has 76 Blast hits to 76 proteins in 23 species: Archae - 0; Bacteria - 6; Metazoa - 0; Fungi - 0; Plants - 69; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). | chr1:9511129-9512820 REVERSE LENGTH=202 | SoyBase | E_val: 5.00E-66 | ISS |
| GO:0008150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biological process | SoyBase | N/A | ISS |
| GO:0003674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: molecular function | SoyBase | N/A | ISS |
| PF04359 | PFAM | Protein of unknown function (DUF493) | JGI | ISS | |
| UniRef100_I1KS22 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KS22_SOYBN | SoyBase | E_val: 4.00E-134 | ISS |
| UniRef100_Q01L01 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: OSIGBa0148P16.4 protein n=2 Tax=Oryza sativa RepID=Q01L01_ORYSA | SoyBase | E_val: 2.00E-61 | ISS |
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Glyma08g10990 not represented in the dataset |
Glyma08g10990 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.08g104500 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma08g10990.3 sequence type=transcript gene model=Glyma08g10990 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATTCGAGCCACGAATGCCGCATGGGAGAAGTTTGAGCCGTGAGAAGAAAAGGGAAGGAGAAAGAGAAGATTGGATTGGGGATTAGGAAAAAATGGCGTGCAGGGGTATGCTTCGTTCCACCATTCTCATAGAACCCAGCCTACTCCGTTCTTTAAATTTCAATTCTAACAAACATCACATAGCTTCACTCAACCAATGGTCTTGCCGGTTTCATTCTCCAAAACCCCCTTATTCTTCCTCTCAGAACGAAACGCCGTTGTCTCAGGACCCTGTCTTGAAGGCCATTTCAGAGATTTCCAAAGGCGAAGGGAGGGTTGGCCAAACAACAAACGTAATTATTGGAAGCACTGCTGCCGATGATTCTAACAATGAATGGTTGGCTTTGGACCAGAAGGTGAACTCGTACCCAACCGATCGAGGATTTACCGCCATTGGAACTGGAGGTGAGGATTTTGTGCAAGCCATGGTTGTTGCTGTCGAATCTGTAATCCAACAACCAATTCCTCAGGGATATGTGAAGCAAAAGTTATCGTCGGGGGGCAAATATGTATCTGTAAATATTGGGCCCATTCAAGTTGTTTCTAGTGAACAGGTCCAAGCTGTATATAATGCCATGAGGACAGACAACCGGGTGAAATATTTTTTATAATCTGTCACATTGTTTTGTAGAGAACACCACGATTGCAAGAACAATCTAGTTTTGGAGTGTCATAACGAGTGGAAGAAATAATTAGAGAAAATGTTCAGAATTCTTTCTACAAAGAGTTGGATGTGGATGCCTTGAGACAGTGAAACGGCCTAGTTAGTTGATTTAGAGTGCATGGATTAAAGTTTCATCCAACTGAACTTATGTTCAACTCAATCCATCACTCACATTGTTAGCATTTATGCATTGGCACGTACAAGAGTGCTTGAGTTTGATCTTCAGAATGCATTGAGTCTCTGACCCTTTTTTCAACCCCTTTCCACCTCTCTCTTGGTGGTCAAGAGCCTGATTAACTAAAAAAAATCTTCTTTGCTTTCAGAATTTGTACTAATTTGTTTCAATTGAAAATGAAACAAAAACTTGGCATTCTCTACGAAACTTTTGAAGTTGAATGTTGAACTGTAAAATTTCGAATCTTTCCGAAGAAATATACATGAACGTAATACATTACAATAAATAAATTCACGTCCTCTATTTTTATCTTTACTA >Glyma08g10990.4 sequence type=transcript gene model=Glyma08g10990 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high AAAAAATCTAAAATTTTATAGAAAACAATTTATTTCTTGAGATAATCTCCTTCTTATTTTTTAGAAGAAAAGGGAAGGAGAAAGAGAAGATTGGATTGGGGATTAGGAAAAAATGGCGTGCAGGGGTATGCTTCGTTCCACCATTCTCATAGAACCCAGCCTACTCCGTTCTTTAAATTTCAATTCTAACAAACATCACATAGCTTCACTCAACCAATGGTCTTGCCGGTTTCATTCTCCAAAACCCCCTTATTCTTCCTCTCAGAACGAAACGCCGTTGTCTCAGGACCCTGTCTTGAAGGCCATTTCAGAGATTTCCAAAGGCGAAGGGAGGGTTGGCCAAACAACAAACGTAATTATTGGAAGCACTGCTGCCGATGATTCTAACAATGAATGGTTGGCTTTGGACCAGAAGGTGAACTCGTACCCAACCGATCGAGGATTTACCGCCATTGGAACTGGAGGTGAGGATTTTGTGCAAGCCATGGTTGTTGCTGTCGAATCTGTAATCCAACAACCAATTCCTCAGGGATATGTGAAGCAAAAGTTATCGTCGGGGGGCAAATATGTATCTGTAAATATTGGGCCCATTCAAGTTGTTTCTAGTGAACAGGTCCAAGCTGTATATAATGCCATGAGGACAGACAACCGGGTGAAATATTTTTTATAATCTGTCACATTGTTTTGTAGAGAACACCACGATTGCAAGAACAATCTAGTTTTGGAGTGTCATAACGAGTGGAAGAAATAATTAGAGAAAATGTTCAGAATTCTTTCTACAAAGAGTTGGATGTGGATGCCTTGAGACAGTGAAACGGCCTAGTTAGTTGATTTAGAGTGCATGGATTAAAGTTTCATCCAACTGAACTTATGTTCAACTCAATCCATCACTCACATTGTTAGCATTTATGCATTGGCACGTACAAGAGTGCTTGAGTTTGATCTTCAGAATGCATTGAGTCTCTGACCCTTTTTTCAACCCCTTTCCACCTCTCTCTTGGTGGTCAAGAGCCTGATTAACTAAAAAAAATCTTCTTTGCTTTCAGAATTTGTACTAATTTGTTTCAATTGAAAATGAAACAAAAACTTGGCATTCTCTACGAAACTTTTGAAGTTGAATGTTGAACTGTAAAATTTCGAATCTTTCCGAAGAAATATACATGAACGTAATACATTACAATAAATAAATTCACGTCCTCTATTTTTATCTTTACTA
>Glyma08g10990.2 sequence type=CDS gene model=Glyma08g10990 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCGTGCAGGGGTATGCTTCGTTCCACCATTCTCATAGAACCCAGCCTACTCCGTTCTTTAAATTTCAATTCTAACAAACATCACATAGCTTCACTCAACCAATGGTCTTGCCGGTTTCATTCTCCAAAACCCCCTTATTCTTCCTCTCAGAACGAAACGCCGTTGTCTCAGGACCCTGTCTTGAAGGCCATTTCAGAGATTTCCAAAGGCGAAGGGAGGGTTGGCCAAACAACAAACGTAATTATTGGAAGCACTGCTGCCGATGATTCTAACAATGAATGGTTGGCTTTGGACCAGAAGGTGAACTCGTACCCAACCGATCGAGGATTTACCGCCATTGGAACTGGAGGTGAGGATTTTGTGCAAGCCATGGTTGTTGCTGTCGAATCTGTAATCCAACAACCAATTCCTCAGGGATATGTGAAGCAAAAGTTATCGTCGGGGGGCAAATATGTATCTGTAAATATTGGGCCCATTCAAGTTGTTTCTAGTGAACAGGTCCAAGCTGTATATAATGCCATGAGGACAGACAACCGGGTGAAATATTTTTTATAA >Glyma08g10990.3 sequence type=CDS gene model=Glyma08g10990 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCGTGCAGGGGTATGCTTCGTTCCACCATTCTCATAGAACCCAGCCTACTCCGTTCTTTAAATTTCAATTCTAACAAACATCACATAGCTTCACTCAACCAATGGTCTTGCCGGTTTCATTCTCCAAAACCCCCTTATTCTTCCTCTCAGAACGAAACGCCGTTGTCTCAGGACCCTGTCTTGAAGGCCATTTCAGAGATTTCCAAAGGCGAAGGGAGGGTTGGCCAAACAACAAACGTAATTATTGGAAGCACTGCTGCCGATGATTCTAACAATGAATGGTTGGCTTTGGACCAGAAGGTGAACTCGTACCCAACCGATCGAGGATTTACCGCCATTGGAACTGGAGGTGAGGATTTTGTGCAAGCCATGGTTGTTGCTGTCGAATCTGTAATCCAACAACCAATTCCTCAGGGATATGTGAAGCAAAAGTTATCGTCGGGGGGCAAATATGTATCTGTAAATATTGGGCCCATTCAAGTTGTTTCTAGTGAACAGGTCCAAGCTGTATATAATGCCATGAGGACAGACAACCGGGTGAAATATTTTTTATAA >Glyma08g10990.4 sequence type=CDS gene model=Glyma08g10990 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCGTGCAGGGGTATGCTTCGTTCCACCATTCTCATAGAACCCAGCCTACTCCGTTCTTTAAATTTCAATTCTAACAAACATCACATAGCTTCACTCAACCAATGGTCTTGCCGGTTTCATTCTCCAAAACCCCCTTATTCTTCCTCTCAGAACGAAACGCCGTTGTCTCAGGACCCTGTCTTGAAGGCCATTTCAGAGATTTCCAAAGGCGAAGGGAGGGTTGGCCAAACAACAAACGTAATTATTGGAAGCACTGCTGCCGATGATTCTAACAATGAATGGTTGGCTTTGGACCAGAAGGTGAACTCGTACCCAACCGATCGAGGATTTACCGCCATTGGAACTGGAGGTGAGGATTTTGTGCAAGCCATGGTTGTTGCTGTCGAATCTGTAATCCAACAACCAATTCCTCAGGGATATGTGAAGCAAAAGTTATCGTCGGGGGGCAAATATGTATCTGTAAATATTGGGCCCATTCAAGTTGTTTCTAGTGAACAGGTCCAAGCTGTATATAATGCCATGAGGACAGACAACCGGGTGAAATATTTTTTATAA
>Glyma08g10990.2 sequence type=predicted peptide gene model=Glyma08g10990 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MACRGMLRSTILIEPSLLRSLNFNSNKHHIASLNQWSCRFHSPKPPYSSSQNETPLSQDPVLKAISEISKGEGRVGQTTNVIIGSTAADDSNNEWLALDQKVNSYPTDRGFTAIGTGGEDFVQAMVVAVESVIQQPIPQGYVKQKLSSGGKYVSVNIGPIQVVSSEQVQAVYNAMRTDNRVKYFL* >Glyma08g10990.3 sequence type=predicted peptide gene model=Glyma08g10990 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MACRGMLRSTILIEPSLLRSLNFNSNKHHIASLNQWSCRFHSPKPPYSSSQNETPLSQDPVLKAISEISKGEGRVGQTTNVIIGSTAADDSNNEWLALDQKVNSYPTDRGFTAIGTGGEDFVQAMVVAVESVIQQPIPQGYVKQKLSSGGKYVSVNIGPIQVVSSEQVQAVYNAMRTDNRVKYFL* >Glyma08g10990.4 sequence type=predicted peptide gene model=Glyma08g10990 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MACRGMLRSTILIEPSLLRSLNFNSNKHHIASLNQWSCRFHSPKPPYSSSQNETPLSQDPVLKAISEISKGEGRVGQTTNVIIGSTAADDSNNEWLALDQKVNSYPTDRGFTAIGTGGEDFVQAMVVAVESVIQQPIPQGYVKQKLSSGGKYVSVNIGPIQVVSSEQVQAVYNAMRTDNRVKYFL*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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