SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G67420 | AT | Annotation by Michelle Graham. TAIR10: Zn-dependent exopeptidases superfamily protein | chr1:25255264-25260358 FORWARD LENGTH=922 | SoyBase | E_val: 0 | ISS |
| GO:0006508 | GO-bp | Annotation by Michelle Graham. GO Biological Process: proteolysis | SoyBase | N/A | ISS |
| GO:0007059 | GO-bp | Annotation by Michelle Graham. GO Biological Process: chromosome segregation | SoyBase | N/A | ISS |
| GO:0007062 | GO-bp | Annotation by Michelle Graham. GO Biological Process: sister chromatid cohesion | SoyBase | N/A | ISS |
| GO:0007129 | GO-bp | Annotation by Michelle Graham. GO Biological Process: synapsis | SoyBase | N/A | ISS |
| GO:0007131 | GO-bp | Annotation by Michelle Graham. GO Biological Process: reciprocal meiotic recombination | SoyBase | N/A | ISS |
| GO:0009887 | GO-bp | Annotation by Michelle Graham. GO Biological Process: organ morphogenesis | SoyBase | N/A | ISS |
| GO:0009888 | GO-bp | Annotation by Michelle Graham. GO Biological Process: tissue development | SoyBase | N/A | ISS |
| GO:0010332 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to gamma radiation | SoyBase | N/A | ISS |
| GO:0010638 | GO-bp | Annotation by Michelle Graham. GO Biological Process: positive regulation of organelle organization | SoyBase | N/A | ISS |
| GO:0032204 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of telomere maintenance | SoyBase | N/A | ISS |
| GO:0032504 | GO-bp | Annotation by Michelle Graham. GO Biological Process: multicellular organism reproduction | SoyBase | N/A | ISS |
| GO:0033044 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of chromosome organization | SoyBase | N/A | ISS |
| GO:0042138 | GO-bp | Annotation by Michelle Graham. GO Biological Process: meiotic DNA double-strand break formation | SoyBase | N/A | ISS |
| GO:0043247 | GO-bp | Annotation by Michelle Graham. GO Biological Process: telomere maintenance in response to DNA damage | SoyBase | N/A | ISS |
| GO:0045132 | GO-bp | Annotation by Michelle Graham. GO Biological Process: meiotic chromosome segregation | SoyBase | N/A | ISS |
| GO:0008233 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: peptidase activity | SoyBase | N/A | ISS |
| KOG2194 | KOG | Aminopeptidases of the M20 family | JGI | ISS | |
| PTHR12147 | Panther | UNCHARACTERIZED PROTEASE M28-RELATED | JGI | ISS | |
| PTHR12147:SF6 | Panther | UNCHARACTERIZED | JGI | ISS | |
| PF04389 | PFAM | Peptidase family M28 | JGI | ISS | |
| UniRef100_F4HRW2 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Zn-dependent exopeptidase-like protein n=1 Tax=Arabidopsis thaliana RepID=F4HRW2_ARATH | SoyBase | E_val: 0 | ISS |
| UniRef100_I1KS06 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KS06_SOYBN | SoyBase | E_val: 0 | ISS |
|
Glyma08g10880 not represented in the dataset |
Glyma08g10880 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma05g27910 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.08g103300 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma08g10880.1 sequence type=CDS gene model=Glyma08g10880 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCGTTCGGGTCTTCCGAGGATGTCTCAGGTGTCAAATTACTTGTCCTTCTGGCGGTCATGTACGGACTCTTGTCGGCGCTGACATACTCCGTCATCCACATGAAGTTCGTCAACCCTCTCGGGAACGACGCGCCGTTTGATCGATTCTCCGAAGCCAGAACTGTAGAACATGTTCGAATGTTGTCGCAAGAAATCGACGGCCGTCAAGAAGGGCGTCCTGGATTGAAAAAGGCAGCACAATATATTAAGCGTCAGTTGGAAGTAATAAAGGAGCGAGCTACCTCCAATGTCAGAATTGAGATTGAGGAGACAACTGTGAGTGGCTCCTTCAATATGTTGTTTTTGGGCCATAACATAGCTCTGGGATACAGAAATCATACTAATATTCTTATGAGGATATCATCTGTGGATTCCAAAGAGACTGATCCATCCGTTTTAGTGAATGGGCATTTTGATAGTCCCCTTGGTTCCCCTGGTGCTGGTGACTGTGGTTCATGTGTTGCATCTATGCTGGAAATTGCAAGACTAATTGTTGACTCTGGTTGGGCTCCCTACCGCCCAGTTATTTTCCTTTTTAATGGTGCTGAGGAACTTTTTATGTTGGGTGCACATGGATTCATGAAGACACATAAATGGCATGACACTATAGGAGCTTTTATAAATGTGGAGGCATCTGGGACTGGAGGGCCTGATTTAGTTTGCCAATCTGGACCCAGTTCTTGGCCTTCTAATGTCTATGCAGAAGCAGCAATATACCCTATGGCTAATAGTGCAGCCCAGGACGTTTTTCCTGTTATTCCTGGAGATACAGATTACCGAATATTTTCCCAAGACTATGGGGATATTCCCGGGCTTGACATTATCTTTCTCCTTGGTGGTTATTTTTACCATACCTCCTATGATACAGTAGAGAGACTATTACCTGGAAGCATCCAAGCACGTGGAGAAAATCTGTTCAGCATAATCAAGACTTTTACTAATTCTGCTAATATACAGAACACCTATAAAAAAAAATCTAGTGAAGTTACTGCTAGCACATTCAACGATGAGCGGGCTGTATTCTTTGATTATTTCTCATGGTTTATGATATTTTATCCTAGATGGGTAGCTAAAATTCTTCACAGTATTCCTGTCTTCTTCTTTCTTGTCATGCCCTTCACTCATGGTAGGTCACATTCTTGGTCAGCAGCTTTGTGTGATTTTATAAAAGGATTTATGTTCCATGCGGTTGGGATTATATTGGCCGTTGGTGTTCCTGTTGCATTTTCTATTCTGAGATTACTGTTCTCTTCTCAAACAATGAATTGGTTTGCTCATCCATACTTGGCTTTCGCAATGTTTGTACCTTGTGCACTTGTTGGACTTTTAATTCCAAGAATAATCTGGAGACACTTTCCTCTTTCTCAAGATATTTCCATTGTCAAGACATCAAAAGAGGCACTATCTGATGAAGCAAGGTTCTGGGGAGCATTTGGGTTCTATGCTGTATTAACTTTGGCTTATCTTGTAGCTGGGTTGAGTGGAGGTTTTGTGACCTTTTTTGTTTGTGCTTCCCTGCTTCCTGCATGGATATCGTTCTGCTTGTCAGTCAAATTCTTTGGACAACGGTCACTCAGGTCAACAATGTTTTACATACTACCTCTAGTTCCATGCCTTGCGTATTCTGTTTATTTTGGTGGCTTTCTTGCCCAGTTTCTGATAGAGAGGATGGGAATGATGGGTTCTCTTCCACTACCATATGGGCACTATGTTCCCGATGTTATTGTGGCTGCATTAATTGGAACTGTAACTGGTTGGTGCACAGGCCCTCTAATGCCCATATGTGGGCATTGGTTAGCCAGGTCATCCATCTTGCAATTTCTTCTGCATCTTAGTGTGTTTGCTTTGGCATTATCATCTCAGTTCTTTCCTTACACCATGTCTGCACCTAAGAGGATTGTTTTTCAGCATACTTTCCATACTGCAGGCTCAAGTCAGATTTTGGAATCCACTTATGATTTTTCTGTAACTGACTCCAATTCTTTACTTTTCCTTTTCAAACATTCACCTGAAGTGGCAAAGGAATTGAATATTACTTCAGAGTTTTCATTTGAATCTGCATCATTGTCTAAACACAATGATTGGATGGCAATTTTTCCACTTTCTTTTCTCTTCTCAAATAGTCTCAAGTTCCCTGCGAAAAAGGATGATATTTTGAAACAGTATGAATTCTTTCCGAAATTGTCTGTTCAAAATCCATCTTTAAATTCCAAAAAGGGACCCAGAAGAGTTCACTTGGAGCTTTATTTAGGTTCCTTGGAAGAGGTCTGGGTTGCGGTCCTCAACATCACTGGTCCTTTATCAAGTTGGTCATTTGCAGATAATTTGCTTCCAGGAACTGAAACCTATGGTGATGGTCCACAATCATATATATGTCGTCTTAGTGGACCTAGCGATGGGAATTGGACCTTCTGGTTAGAGGCTAACAACTCTGAAGCATTACGAGTGGACCTAGCAATTTTAGACCAAAAGTTGGTTGATCCAATAAAGAGATTGAAGAATCTTTTTCCAGATTGGGTTGATGTTGTTGCATATTCTAGTTTTATGTCTAGCTATATCTTCTAA
>Glyma08g10880.1 sequence type=predicted peptide gene model=Glyma08g10880 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAFGSSEDVSGVKLLVLLAVMYGLLSALTYSVIHMKFVNPLGNDAPFDRFSEARTVEHVRMLSQEIDGRQEGRPGLKKAAQYIKRQLEVIKERATSNVRIEIEETTVSGSFNMLFLGHNIALGYRNHTNILMRISSVDSKETDPSVLVNGHFDSPLGSPGAGDCGSCVASMLEIARLIVDSGWAPYRPVIFLFNGAEELFMLGAHGFMKTHKWHDTIGAFINVEASGTGGPDLVCQSGPSSWPSNVYAEAAIYPMANSAAQDVFPVIPGDTDYRIFSQDYGDIPGLDIIFLLGGYFYHTSYDTVERLLPGSIQARGENLFSIIKTFTNSANIQNTYKKKSSEVTASTFNDERAVFFDYFSWFMIFYPRWVAKILHSIPVFFFLVMPFTHGRSHSWSAALCDFIKGFMFHAVGIILAVGVPVAFSILRLLFSSQTMNWFAHPYLAFAMFVPCALVGLLIPRIIWRHFPLSQDISIVKTSKEALSDEARFWGAFGFYAVLTLAYLVAGLSGGFVTFFVCASLLPAWISFCLSVKFFGQRSLRSTMFYILPLVPCLAYSVYFGGFLAQFLIERMGMMGSLPLPYGHYVPDVIVAALIGTVTGWCTGPLMPICGHWLARSSILQFLLHLSVFALALSSQFFPYTMSAPKRIVFQHTFHTAGSSQILESTYDFSVTDSNSLLFLFKHSPEVAKELNITSEFSFESASLSKHNDWMAIFPLSFLFSNSLKFPAKKDDILKQYEFFPKLSVQNPSLNSKKGPRRVHLELYLGSLEEVWVAVLNITGPLSSWSFADNLLPGTETYGDGPQSYICRLSGPSDGNWTFWLEANNSEALRVDLAILDQKLVDPIKRLKNLFPDWVDVVAYSSFMSSYIF*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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