Glyma08g10800 - SoyBase

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Report for Sequence Feature Glyma08g10800

Feature Type:	gene_model
Chromosome:	Gm08
Start:	7860864
stop:	7864360
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g10800

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G67590	AT	Annotation by Michelle Graham. TAIR10: Remorin family protein \| chr1:25333137-25334472 REVERSE LENGTH=347	SoyBase	E_val: 7.00E-112	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
PF03763	PFAM	Remorin, C-terminal region	JGI		ISS
UniRef100_I1KRZ7	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KRZ7_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q9SR48	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: F12A21.28 n=1 Tax=Arabidopsis thaliana RepID=Q9SR48_ARATH	SoyBase	E_val: 3.00E-109	ISS

Expression Patterns of Glyma08g10800

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g10800

Paralog	Evidence	Comments
Glyma05g27810	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g10800 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g102500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g10800

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma08g10800

Limit To All Plant Sequences

>Glyma08g10800.2   sequence type=transcript   gene model=Glyma08g10800   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TCCATTTTCAGCTTCATTTACTCTGTTTTAATTCCTCTTACTGCATTTCCACACACTTAAAACAACCTTAGATTCCAAAGTTTTAACTCAATGAGATCTGGAGCAGAAGTTGTAGATCCTGAAATTTTCACTGTGTAGAGTTTGGACCAAAGTTAGAGTTTTTGAGAGACATCTTTGAGAATGAGATACGTGGAAGACAAAGGGTGCTATAACAACAATGGACCAACACAAGAGACCCCAAATAGCAGTGCCATGTACTCAGAGTTTCACAAAGGAAAAGATGCTACTAGTGTCTCCAACCACCACCATCGAGCAACCATGGGAAAACCAACACCTTCTAAGTGGGACGATGCACAAAAATGGCTTGTGGGGTTGTCAAAAGGTGGTGGAGAGAAAAGCCACTCCAAAAGCAAGCCAAGAAACTCAAACGCAGATGATTTGAGACTCATAGCACCTGTGCCACAGAAGGAGAATGATTACTCAAGTAGCGAGAAGGAAGAGGAGGAAAATGATGCATGCCATGATTTCATCATGACTAATAATATTATTAGTGCTAATGCTACTGCTGCTCAATATGAAGCTGAAGCCAAAAGGGTGGAATGTGATGAGTCAAATTGGAGAAGCAATAATAACAATAATAAAAGGTCTTCAGAAAATTACACAATCCAAGTGCAACCAATATGTTTCAGAGACATGGGGACTGAGATGACACCAATTGCTAGCCAAGAGCCTTCAAGAACTGGGACACCAATTAGAGCCACAACTCCTGCTACTAGAAGCCCAATTCATTCAGGGGCTTCAACTCCAATGAGGGGTCAAAATGGGTCACAACATGTTGCTGAGACTACTAGGAAATGTGGAAATGGAGAAGGATCAACAAGCCCTTGCAAGAGGACTCATGAAGATCATCAAGCTAGAAAGTTGAGTCCTCTAGAAAGCCGAGCAATGGCTTGGGATGAGGCCGAACGTGCCAAATATATGGCCAGGTTCAAGCGTGAAGAGGTGAAGATTCAAGCCTGGGAAAATCATCAGATAAGAAAAGCTGAAATGGAAATGAAGAAAATGGAGGTGAAGGCTGAGAGAATGAAAGCATTGGCACAAGAAAGGTTTACAAATAAACTAGCTTCGACTAAGAGGATAGCTGAAGAGAAACGAGCTAATGCACAAGTGAAGCTGAATGACAAAGCTTTGAGGGCTACTGAAAGGGTTGAGTATATAAGAAGGACAGGACATGTGCCTTCTTCTTTCTCTTTAAGCTTTAAGTTGCCTTCCATTTGCTGGTAGTAGCAATTTTGCAACCAATATATGTAATATCTTGTCGTGTGAAATATAAAACCTTCAGTACAATTGGTAAAATTTATCATGAAGCTGTTGACATATATAAGGTAATGTTTCATTAAATTACACTTGGGTGCATTTCAAATGTAAATTTAAAAAAATGGTGAGTCTCACATCTTTATATTTTAATTTAAATATTTCATTTTTTTAAA

Coding sequences of Glyma08g10800

Limit To All Plant Sequences

>Glyma08g10800.1   sequence type=CDS   gene model=Glyma08g10800   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGATACGTGGAAGACAAAGGGTGCTATAACAACAATGGACCAACACAAGAGACCCCAAATAGCAGTGCCATGTACTCAGAGTTTCACAAAGGAAAAGATGCTACTAGTGTCTCCAACCACCACCATCGAGCAACCATGGGAAAACCAACACCTTCTAAGTGGGACGATGCACAAAAATGGCTTGTGGGGTTGTCAAAAGGTGGTGGAGAGAAAAGCCACTCCAAAAGCAAGCCAAGAAACTCAAACGCAGATGATTTGAGACTCATAGCACCTGTGCCACAGAAGGAGAATGATTACTCAAGTAGCGAGAAGGAAGAGGAGGAAAATGATGCATGCCATGATTTCATCATGACTAATAATATTATTAGTGCTAATGCTACTGCTGCTCAATATGAAGCTGAAGCCAAAAGGGTGGAATGTGATGAGTCAAATTGGAGAAGCAATAATAACAATAATAAAAGGTCTTCAGAAAATTACACAATCCAAGTGCAACCAATATGTTTCAGAGACATGGGGACTGAGATGACACCAATTGCTAGCCAAGAGCCTTCAAGAACTGGGACACCAATTAGAGCCACAACTCCTGCTACTAGAAGCCCAATTCATTCAGGGGCTTCAACTCCAATGAGGGGTCAAAATGGGTCACAACATGTTGCTGAGACTACTAGGAAATGTGGAAATGGAGAAGGATCAACAAGCCCTTGCAAGAGGACTCATGAAGATCATCAAGCTAGAAAGTTGAGTCCTCTAGAAAGCCGAGCAATGGCTTGGGATGAGGCCGAACGTGCCAAATATATGGCCAGGTTCAAGCGTGAAGAGGTGAAGATTCAAGCCTGGGAAAATCATCAGATAAGAAAAGCTGAAATGGAAATGAAGAAAATGGAGGTGAAGGCTGAGAGAATGAAAGCATTGGCACAAGAAAGGTTTACAAATAAACTAGCTTCGACTAAGAGGATAGCTGAAGAGAAACGAGCTAATGCACAAGTGAAGCTGAATGACAAAGCTTTGAGGGCTACTGAAAGGGTTGAGTATATAAGAAGGACAGGACATGTGCCTTCTTCTTTCTCTTTAAGCTTTAAGTTGCCTTCCATTTGCTGGTAG

>Glyma08g10800.2   sequence type=CDS   gene model=Glyma08g10800   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGATACGTGGAAGACAAAGGGTGCTATAACAACAATGGACCAACACAAGAGACCCCAAATAGCAGTGCCATGTACTCAGAGTTTCACAAAGGAAAAGATGCTACTAGTGTCTCCAACCACCACCATCGAGCAACCATGGGAAAACCAACACCTTCTAAGTGGGACGATGCACAAAAATGGCTTGTGGGGTTGTCAAAAGGTGGTGGAGAGAAAAGCCACTCCAAAAGCAAGCCAAGAAACTCAAACGCAGATGATTTGAGACTCATAGCACCTGTGCCACAGAAGGAGAATGATTACTCAAGTAGCGAGAAGGAAGAGGAGGAAAATGATGCATGCCATGATTTCATCATGACTAATAATATTATTAGTGCTAATGCTACTGCTGCTCAATATGAAGCTGAAGCCAAAAGGGTGGAATGTGATGAGTCAAATTGGAGAAGCAATAATAACAATAATAAAAGGTCTTCAGAAAATTACACAATCCAAGTGCAACCAATATGTTTCAGAGACATGGGGACTGAGATGACACCAATTGCTAGCCAAGAGCCTTCAAGAACTGGGACACCAATTAGAGCCACAACTCCTGCTACTAGAAGCCCAATTCATTCAGGGGCTTCAACTCCAATGAGGGGTCAAAATGGGTCACAACATGTTGCTGAGACTACTAGGAAATGTGGAAATGGAGAAGGATCAACAAGCCCTTGCAAGAGGACTCATGAAGATCATCAAGCTAGAAAGTTGAGTCCTCTAGAAAGCCGAGCAATGGCTTGGGATGAGGCCGAACGTGCCAAATATATGGCCAGGTTCAAGCGTGAAGAGGTGAAGATTCAAGCCTGGGAAAATCATCAGATAAGAAAAGCTGAAATGGAAATGAAGAAAATGGAGGTGAAGGCTGAGAGAATGAAAGCATTGGCACAAGAAAGGTTTACAAATAAACTAGCTTCGACTAAGAGGATAGCTGAAGAGAAACGAGCTAATGCACAAGTGAAGCTGAATGACAAAGCTTTGAGGGCTACTGAAAGGGTTGAGTATATAAGAAGGACAGGACATGTGCCTTCTTCTTTCTCTTTAAGCTTTAAGTTGCCTTCCATTTGCTGGTAG

Predicted protein sequences of Glyma08g10800

Limit To All Plant Sequences

>Glyma08g10800.1   sequence type=predicted peptide   gene model=Glyma08g10800   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MRYVEDKGCYNNNGPTQETPNSSAMYSEFHKGKDATSVSNHHHRATMGKPTPSKWDDAQKWLVGLSKGGGEKSHSKSKPRNSNADDLRLIAPVPQKENDYSSSEKEEEENDACHDFIMTNNIISANATAAQYEAEAKRVECDESNWRSNNNNNKRSSENYTIQVQPICFRDMGTEMTPIASQEPSRTGTPIRATTPATRSPIHSGASTPMRGQNGSQHVAETTRKCGNGEGSTSPCKRTHEDHQARKLSPLESRAMAWDEAERAKYMARFKREEVKIQAWENHQIRKAEMEMKKMEVKAERMKALAQERFTNKLASTKRIAEEKRANAQVKLNDKALRATERVEYIRRTGHVPSSFSLSFKLPSICW*

>Glyma08g10800.2   sequence type=predicted peptide   gene model=Glyma08g10800   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MRYVEDKGCYNNNGPTQETPNSSAMYSEFHKGKDATSVSNHHHRATMGKPTPSKWDDAQKWLVGLSKGGGEKSHSKSKPRNSNADDLRLIAPVPQKENDYSSSEKEEEENDACHDFIMTNNIISANATAAQYEAEAKRVECDESNWRSNNNNNKRSSENYTIQVQPICFRDMGTEMTPIASQEPSRTGTPIRATTPATRSPIHSGASTPMRGQNGSQHVAETTRKCGNGEGSTSPCKRTHEDHQARKLSPLESRAMAWDEAERAKYMARFKREEVKIQAWENHQIRKAEMEMKKMEVKAERMKALAQERFTNKLASTKRIAEEKRANAQVKLNDKALRATERVEYIRRTGHVPSSFSLSFKLPSICW*

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