Glyma08g10780 - SoyBase

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Report for Sequence Feature Glyma08g10780

Feature Type:	gene_model
Chromosome:	Gm08
Start:	7845924
stop:	7854013
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g10780

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G27880	AT	Annotation by Michelle Graham. TAIR10: DEAD/DEAH box RNA helicase family protein \| chr1:9708940-9713901 FORWARD LENGTH=911	SoyBase	E_val: 0	ISS
GO:0006260	GO-bp	Annotation by Michelle Graham. GO Biological Process: DNA replication	SoyBase	N/A	ISS
GO:0006306	GO-bp	Annotation by Michelle Graham. GO Biological Process: DNA methylation	SoyBase	N/A	ISS
GO:0006310	GO-bp	Annotation by Michelle Graham. GO Biological Process: DNA recombination	SoyBase	N/A	ISS
GO:0008283	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell proliferation	SoyBase	N/A	ISS
GO:0042631	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular response to water deprivation	SoyBase	N/A	ISS
GO:0051567	GO-bp	Annotation by Michelle Graham. GO Biological Process: histone H3-K9 methylation	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003676	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding	SoyBase	N/A	ISS
GO:0004386	GO-mf	Annotation by Michelle Graham. GO Molecular Function: helicase activity	SoyBase	N/A	ISS
GO:0005524	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP binding	SoyBase	N/A	ISS
GO:0008026	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP-dependent helicase activity	SoyBase	N/A	ISS
KOG0351	KOG	ATP-dependent DNA helicase	JGI		ISS
PTHR13710	Panther	DNA HELICASE RECQ FAMILY MEMBER	JGI		ISS
PTHR13710:SF1	Panther	gb def: dna helicase possibly pseudo [schizosaccharomyces pombe]	JGI		ISS
PF00270	PFAM	DEAD/DEAH box helicase	JGI		ISS
PF00271	PFAM	Helicase conserved C-terminal domain	JGI		ISS
UniRef100_B9RMM3	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Rothmund-thomson syndrome DNA helicase recq4, putative n=1 Tax=Ricinus communis RepID=B9RMM3_RICCO	SoyBase	E_val: 0	ISS
UniRef100_UPI0002337FA9	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI0002337FA9 related cluster n=1 Tax=unknown RepID=UPI0002337FA9	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma08g10780

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g10780

Paralog	Evidence	Comments
Glyma05g27791	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g10780 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g102300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g10780

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma08g10780

Limit To All Plant Sequences

>Glyma08g10780.1   sequence type=CDS   gene model=Glyma08g10780   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGTCCGATTCCGACTCCGATGGATCTCACATCTCCGCAACTCCACCAAGAAAATCAACTCCATCACCACCACCACCACCACCTGTAGTAGTTTCAAAAAAATCCAGAATCAGAATCAAACCTTCAAAATCAAAACCAAAACCAGACCCTTCCGGATCCTCCAAAACCCAGTCCAAATCCGACCCGATCCAGCAAGCCACCCTTCTCTCCCTCCCCACCGATCTACCCTTCCAAATCCGGCGACCTTCCGACGCGCCGTCGATTTCGTACTCCATCGAAACCCTCCCCGCCGGCTACTTCTCCTCCTCCCATTCTGCTTCCTTCTCGAAAATTCGAAGACCTCTCCTCAATCTAGAACCTTCTGAAGTCGAACAACCGGTTTTTACTTCCGGCGCGTCTGACTCACGCGCCGAGGGCGCCGACTTGAGGAAGCGTGGGAAGAGCCAGCTTCCCAACCTGATTGGCTCCAGTGCGCCAATGCCGAGCGTGAAGCCGCGAACATCCGGAGCCGGCGAAGGGAACTTCGTGAAGCTCAACATGAATGGCAAGAGAAAGAAGTTCCTTAACAAGAGAGGGAAATTTGGCGGGAAAAGGTACAAGAGTTGGAGATTCAAATCGCAGCGCGAGAAGGAGGAGGAGCAAGAAGAGGCTGTTGGAGAGTTGAAACAGAGAGGGGGTTGTAAGAGGAGGGAGATTGATGGTGATGCAGTGGAGGAGGCTGCGACCGCAGCACGCAAGGAGCCTTCGGAGGAGAATTTGGTGAAGCTGTTGAGATTGGTTCATGGTTATGATTGCTTTCGAGATGGGCAGGTTGAGGCGATTAAAATGGTTCTTGCCGGGAAGTCTAGTGTGGTTGTTTTGCCGACCGGTGCAGGAAAGTCGCTGTGTTATCAGTTGCCTGCTGTGATCTTGCCTGGTGTTACATTGGTTGTTAGTCCATTGGTAGCTTTGATGATTGATCAGTTAAGGCAATTGCCTCATGTGATTATGGGTGGTCTTCTATCCAGCACTCAGACACCTGAAGAAGCCTCTGAATCACTCAAGCAGCTTCGTCAAGGGGGGATAAAGGTGCTTTTTGTTTCACCAGAGCGGTTTCTGAATGAGGAGTTTCTGTCTACTATTTCTTCTTTGCCAGCCATCTCACTTGTTGTTATTGATGAAGCACATTGTATATCTGAATGGTCTCACAATTTCCGACCATCTTTTATGAGACTTAGAGCATCTCTGCTTCATAAGACACTTAATGTTCGTTCTGTGCTTGCTATGACAGCAACTGCTACAACCACAACTTTAGATGCCATCATGTCTGCTCTAGACATTCCTTCCACAAATCTTATTCAGAAGGCGCAGTTAAGGGACAATTTTCATTTATCAGTGTCTTTGGTCAGAAATAGAATGAAAGACCTACTGAATCTGATAAAGTCTCCTCCTTTTGTGGAAGTTCAAAGCATGATCATATACTGCAAATTTCAGTATGAAACTGATCAAATTAACAGATATTTGAATGATAACAACATCTTGGCAAAGAGTTATCATAGTGGTATCTCTGCAAAGGAACGTAGCTATGTACAGGAGTTGTTTAATTCCAACAAGATCAGAGTGGTTGTTGCAACTGTGGCATTTGGCATGGGACTAGATAAAAGAGATGTCGGAGCTGTAATTCATTACAGTTTGCCTGAAAGTCTGGAAGAGTATGTACAGGAAATAGGACGTGCTGGAAGGGATGGGAGGTTGTCGTACTGTCACCTATTTTATGATGATGAGACATATTTCAAACTTCGTAGTCTAACGCACAGTGAAGGAGTAGATGAATATGCAGTGAACAAATTTCTGCGTGAAGTGTTTCCTGCTGACAAAAACTCCTGTGGGAAAATCTGTTCATTAATCAAAGAATCTGCTTCACGCAGATTTGATATGAAAGAAGAGGTGATGCTTACACTTTTGACACGCTTGGAGTTGGGTGATGTACAGTACTTGCAGTTACATCCACAGATAAATGTAACTGGCACTTTGAATTTTCACAAGTCTCCTCCGCCATTACTTGCTCAGAAGGTTTCTGCTATAGCTGTAATTCTAAAAAGATCTGAAACCAAGCATGGGCAATATATTTTTGACATTCCAACTGTGGCAAATGATATGGGGGTTACAGCAGTGGAATTAATAAATCAGTTGTACGACCTGAAGTTGATGGGAGAAATAACTTATGAAATGAAGGACTTGGCCTACTGTTATAGGATCATTGAAGTCCCAACAGACTTGTTATCTCTATCAGCAGATATTACCCGATGGTTATCAGAAGTTGAAAATTGTAAGGTACGAAAAATGGATGCAATGTTTAATGCTGCATATTTTGCATTAAATCTATGTGATACGATGCAAGGTTGCAGTGGTGCCAATCATACACCATGCTTGCAAAGGAAAATATTGGATTACTTTTCTGGAGTTGATAATGCTGATTTCTGCAAGAAAATTGGTCAAAGCAGCCCTTTCCTGCGGGCAGATATAAAGGTCTTTCTGCAGAGCAATTCACAGGCTCGATTTACACCAAGAGCCGTTGCGAGGGTAATGCATGGAATTGCAAGCCCAGCTTATCCTTCAACAGCATGGAGTAAAACTCATTTCTGGGGAAGGTATACGCATATAGACTTTCAGGTAGTGATGGAAGCAGCAAAGGAAGAACTTAAGAATTTTGTTGGAAAAGATACACTCTAG

Predicted protein sequences of Glyma08g10780

Limit To All Plant Sequences

>Glyma08g10780.1   sequence type=predicted peptide   gene model=Glyma08g10780   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MESDSDSDGSHISATPPRKSTPSPPPPPPVVVSKKSRIRIKPSKSKPKPDPSGSSKTQSKSDPIQQATLLSLPTDLPFQIRRPSDAPSISYSIETLPAGYFSSSHSASFSKIRRPLLNLEPSEVEQPVFTSGASDSRAEGADLRKRGKSQLPNLIGSSAPMPSVKPRTSGAGEGNFVKLNMNGKRKKFLNKRGKFGGKRYKSWRFKSQREKEEEQEEAVGELKQRGGCKRREIDGDAVEEAATAARKEPSEENLVKLLRLVHGYDCFRDGQVEAIKMVLAGKSSVVVLPTGAGKSLCYQLPAVILPGVTLVVSPLVALMIDQLRQLPHVIMGGLLSSTQTPEEASESLKQLRQGGIKVLFVSPERFLNEEFLSTISSLPAISLVVIDEAHCISEWSHNFRPSFMRLRASLLHKTLNVRSVLAMTATATTTTLDAIMSALDIPSTNLIQKAQLRDNFHLSVSLVRNRMKDLLNLIKSPPFVEVQSMIIYCKFQYETDQINRYLNDNNILAKSYHSGISAKERSYVQELFNSNKIRVVVATVAFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFYDDETYFKLRSLTHSEGVDEYAVNKFLREVFPADKNSCGKICSLIKESASRRFDMKEEVMLTLLTRLELGDVQYLQLHPQINVTGTLNFHKSPPPLLAQKVSAIAVILKRSETKHGQYIFDIPTVANDMGVTAVELINQLYDLKLMGEITYEMKDLAYCYRIIEVPTDLLSLSADITRWLSEVENCKVRKMDAMFNAAYFALNLCDTMQGCSGANHTPCLQRKILDYFSGVDNADFCKKIGQSSPFLRADIKVFLQSNSQARFTPRAVARVMHGIASPAYPSTAWSKTHFWGRYTHIDFQVVMEAAKEELKNFVGKDTL*

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