SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G04620 | AT | Annotation by Michelle Graham. TAIR10: Cation efflux family protein | chr2:1610506-1612902 REVERSE LENGTH=798 | SoyBase | E_val: 0 | ISS |
| GO:0006812 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cation transport | SoyBase | N/A | ISS |
| GO:0055085 | GO-bp | Annotation by Michelle Graham. GO Biological Process: transmembrane transport | SoyBase | N/A | ISS |
| GO:0016020 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: membrane | SoyBase | N/A | ISS |
| GO:0016021 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane | SoyBase | N/A | ISS |
| GO:0008324 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: cation transmembrane transporter activity | SoyBase | N/A | ISS |
| GO:0015562 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: efflux transmembrane transporter activity | SoyBase | N/A | ISS |
| KOG1484 | KOG | Putative Zn2+ transporter MSC2 (cation diffusion facilitator superfamily) | JGI | ISS | |
| PTHR11562 | Panther | CATION EFFLUX PROTEIN/ ZINC TRANSPORTER | JGI | ISS | |
| PF01545 | PFAM | Cation efflux family | JGI | ISS | |
| UniRef100_B9MXD1 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Metal tolerance protein n=1 Tax=Populus trichocarpa RepID=B9MXD1_POPTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1KRZ1 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KRZ1_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma08g10750 not represented in the dataset |
Glyma08g10750 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.08g102000 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma08g10750.1 sequence type=CDS gene model=Glyma08g10750 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCCGATAACGATCACTCCCACTCCCACCCTCACCACCACCACCACCACCACCGTCCTCATCGCCTCTCAGTGCCGCCGCGCAGCACCACATTCGGCGGCACTCCGGGAACCCAGCCCGCCTTCTGGTACTCCTCAAGCACAACCCCAACCCCAACCCCCTCCAAAACCCGCCGTTCATTGTCCTTCCCGAAATCGAAATCGAAATCGAGATCCTCAGTCTTCCTCCTCCTCTTCTTCTCCCTCCGCTCCCTCTACTCCCTCCTTCCCTTCCTCCGCTCCTCTCCTTCCTTCTCCCTCTTCCCCTTCTCCTTCCTCGTCTCCCTCCTCTCCTTCTCCCTCACCCTCTCCTTCTCCCTCTTCTCTTCTTCCTCCACCTCCTCCAAAGACCCCTTTCTCCACCACAAACCCAAACACCCTCTTCTCTCACCTTCCCTCACACCCTCCCAGCAGAGAATCTTGGTCACCAAATCAATCCTCCTTGCCCTCGTCTTCCTCCTCCGCTTCCAGGCCCTCCGCTACTGCGGCACCGCCTCCATGATCCTCGCCGAGTTAATGGGCTCCATCGCTGCCCGGCCCAGAAACCCTTACAGGCACAACCTCCGCGGCTTCCTCTCCCTCTCCCTCGGCCTCCTCCTGCTCTCCTTCGGCTGGGACCGGATCGAATGCTTCCCGTTCTCTCCCGCTTGCCTCACCCGCCGGATTTGGCCCTTGATCCTCCCTTTCGCCTCCGGCTTTCTCGCCCACTACCGGCTCGTGGACTCCGGGACTACTCTCAAACAGCTCGGCCGCAAACGGGTTCGGTTAATTACTCTCCTTTTCACTACTGTTATTCTATTTGTTCCCGCAGTTGTTAGTTTCTTCGTGTTTGAGGCAGAAGAAGATAGTGTTGCCTTTGGGAATTTGGCGTGGCCATTGGTGAATACTGTTGTTTTCGGTGTGCTTTTGAGTGAGAGTTATAGTGGTGATGATAATGATGATGATGATAGTTTCGCGAGTTCGAGGGAGTTTCTGGTTACTTTTGTTTGCACTTTGGTGTTGGAGCTTTTTTATTTCCCTGAACTTTCCCTCTGGGGTTTGTTGCTTTGTGGTTTGTTGCTATATGTTGGTGTTAGAGACTTGGATCCTTTTCATTCTTCCAATGAAGGGGAGTTCTCGGGTGACATGATTATGAAGCCTATCAGACATGTTTTGAGCGAGAGGAAGTCGCGGAAGATTGCGCTTTTTCTTCTAATCAATGCTGGGTATATGGTTGTGGAGTTTGCTGCTGGGTTCATGAGCAATAGTCTTGGCCTGATATCGGATGCGTGCCACATGTTGTTTGATTGTGCTGCTTTGGCCATTGGGTTGTATGCATCGTATATATCTCGTTTGCCGGCAAATAATCACTATAACTATGGTAGAGGAAGATTTGAGGTTTTATCAGGGTATACTAATGCTGTGTTTCTGGTTCTTGTGGGAGCACTCATAGTGGTGGAGTCCTTTGAGAGGATATTGGATCCTCAGGAGATATCAACTAATAGCTTGTTGGTTGTCTCCATAGGAGGGCTTGTGGTCAATGTCATTGGCTTGATATTCTTTCATGAGGAGCATCATCATGCTCATGGCCATGTATTATCTGGATCATCATGCTCCCATTCGCACACACACACGGAGTCGCATAGTCACCACACCCACCATCATCATGATCATGATCATGATCATGATCATCTGCATAGCCATGGTCACGAAACAACAATCCATGGAAGCAATCAAGAATATATATCAGTTTCAAGTGATTGCCGAGACGATTCATGCCCTGGTGATCATGGCCATCATCATAATCATAACCACTGTAGTCATGAGAGGAAGCATCATGAGCATGACCATCGCCATATTGATCACAATATGGAAGGGATATTTTTGCATGTTCTTGCTGACACCATGGGGAGTGTTGGTGTTGTTATATCTACCCTGTTGATTAAGTACAAGGGATGGCTTATTGCTGATCCTGCCTGCTCAATTTTTATTTCTATTTTAATTGTATCTTCTGTGATACCTTTGCTAAAAAATTCAGCAGAACATGAGCTGAAGGATGCCTTAATTAATGTTTCGAAGATAAGGGGTGTTTATGGCATTCAAAAGTTTCATTCCTGGAACTTCACAAACACAGATGTAGTTGGTACGATGCATCTTCACGTGTCAACAGATACAGACAAGACATCCGCCAAGTCGCAGGTTTTGCATCTGTTACGTAATGCTGGAATCAAGGATGTAACCTTGCAGGTGGAATGTGTTGGATAA
>Glyma08g10750.1 sequence type=predicted peptide gene model=Glyma08g10750 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MADNDHSHSHPHHHHHHHRPHRLSVPPRSTTFGGTPGTQPAFWYSSSTTPTPTPSKTRRSLSFPKSKSKSRSSVFLLLFFSLRSLYSLLPFLRSSPSFSLFPFSFLVSLLSFSLTLSFSLFSSSSTSSKDPFLHHKPKHPLLSPSLTPSQQRILVTKSILLALVFLLRFQALRYCGTASMILAELMGSIAARPRNPYRHNLRGFLSLSLGLLLLSFGWDRIECFPFSPACLTRRIWPLILPFASGFLAHYRLVDSGTTLKQLGRKRVRLITLLFTTVILFVPAVVSFFVFEAEEDSVAFGNLAWPLVNTVVFGVLLSESYSGDDNDDDDSFASSREFLVTFVCTLVLELFYFPELSLWGLLLCGLLLYVGVRDLDPFHSSNEGEFSGDMIMKPIRHVLSERKSRKIALFLLINAGYMVVEFAAGFMSNSLGLISDACHMLFDCAALAIGLYASYISRLPANNHYNYGRGRFEVLSGYTNAVFLVLVGALIVVESFERILDPQEISTNSLLVVSIGGLVVNVIGLIFFHEEHHHAHGHVLSGSSCSHSHTHTESHSHHTHHHHDHDHDHDHLHSHGHETTIHGSNQEYISVSSDCRDDSCPGDHGHHHNHNHCSHERKHHEHDHRHIDHNMEGIFLHVLADTMGSVGVVISTLLIKYKGWLIADPACSIFISILIVSSVIPLLKNSAEHELKDALINVSKIRGVYGIQKFHSWNFTNTDVVGTMHLHVSTDTDKTSAKSQVLHLLRNAGIKDVTLQVECVG*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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