SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G26260 | AT | Annotation by Michelle Graham. TAIR10: myo-inositol oxygenase 4 | chr4:13297939-13300146 FORWARD LENGTH=317 | SoyBase | E_val: 2.00E-89 | ISS |
| GO:0006949 | GO-bp | Annotation by Michelle Graham. GO Biological Process: syncytium formation | SoyBase | N/A | ISS |
| GO:0019310 | GO-bp | Annotation by Michelle Graham. GO Biological Process: inositol catabolic process | SoyBase | N/A | ISS |
| GO:0019853 | GO-bp | Annotation by Michelle Graham. GO Biological Process: L-ascorbic acid biosynthetic process | SoyBase | N/A | ISS |
| GO:0055114 | GO-bp | Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0005506 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: iron ion binding | SoyBase | N/A | ISS |
| GO:0050113 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: inositol oxygenase activity | SoyBase | N/A | ISS |
| KOG1573 | KOG | Aldehyde reductase | JGI | ISS | |
| PTHR12588 | Panther | MYOINOSITOL OXYGENASE | JGI | ISS | |
| PF05153 | PFAM | Family of unknown function (DUF706) | JGI | ISS | |
| UniRef100_C6K2L2 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Myo-inositol oxygenase n=1 Tax=Solanum lycopersicum RepID=C6K2L2_SOLLC | SoyBase | E_val: 2.00E-95 | ISS |
| UniRef100_UPI0002337E37 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI0002337E37 related cluster n=1 Tax=unknown RepID=UPI0002337E37 | SoyBase | E_val: 2.00E-178 | ISS |
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Glyma08g10690 not represented in the dataset |
Glyma08g10690 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.08g101300 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma08g10690.2 sequence type=CDS gene model=Glyma08g10690 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTTTTCTCTCATTGAGCAACCACAGCCATCAAGGACTCAAGCTGAGGAGAACAATGAGCACTCTCAGAAAATCACCCTTGGGTTGGTGTTGGATGGTGACTTTCCATTGCTGAAACCACCTTCTTCACATGATGGATTAATAGTCCCTGATATCAATTCAAATGGTCGTTCCTTCAGAAATTATTATGGTGAAAGCGAGAGGCATAAATCTGTGAAGGAATTCTACCGACAACAACACATAGGGCAAACTTATGAATTTGCTAAGAAGATGACGGAGGAGTATGGGAAATTGAATAGAGTGGAAATGAGTATACGGGAATGTTGTGAGATCCTTGATAAAATTGTGGATGCCACTGAAGCTGCTAGAAAGGACTACCCTAATGAAGATTGGTTACATTTGACTGCTCTCATTCATGATCTTGGAAAGGTTCTTCTCCTTCCAAGCTTTGGTGGACTTCCTCAATGGACTGTTGTTGGAGATTCGTTTTCTCTTGGTTGTGCTTTTCAGGAAGCAAATACTCACTTTAAGAAAAAAAAAGGGCTATATGCCACAGGATTAGGACTGGACAATGTAATAATGTCGTGGGGACATGATGAGTACATGTATTTGGTTGCTAAGGGAAACACCACCACTTTACCTTCCGAGGCATTCAAGTATGTTCTCTACAGCAAGAGCAATGTGCGAATTGATGTTGAAAAAGTTAAGCCATATTATATGTCGCTCATTGAGAAGTATTTTCCCCAAAGCTCAAATGGTAAAGACAACAGAAAGTGGAGATGA
>Glyma08g10690.2 sequence type=predicted peptide gene model=Glyma08g10690 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MFSLIEQPQPSRTQAEENNEHSQKITLGLVLDGDFPLLKPPSSHDGLIVPDINSNGRSFRNYYGESERHKSVKEFYRQQHIGQTYEFAKKMTEEYGKLNRVEMSIRECCEILDKIVDATEAARKDYPNEDWLHLTALIHDLGKVLLLPSFGGLPQWTVVGDSFSLGCAFQEANTHFKKKKGLYATGLGLDNVIMSWGHDEYMYLVAKGNTTTLPSEAFKYVLYSKSNVRIDVEKVKPYYMSLIEKYFPQSSNGKDNRKWR*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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