SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G59540 | AT | Annotation by Michelle Graham. TAIR10: Ribosomal L38e protein family | chr3:21995897-21996742 REVERSE LENGTH=69 | SoyBase | E_val: 1.00E-41 | ISS |
| GO:0001510 | GO-bp | Annotation by Michelle Graham. GO Biological Process: RNA methylation | SoyBase | N/A | ISS |
| GO:0006412 | GO-bp | Annotation by Michelle Graham. GO Biological Process: translation | SoyBase | N/A | ISS |
| GO:0042254 | GO-bp | Annotation by Michelle Graham. GO Biological Process: ribosome biogenesis | SoyBase | N/A | ISS |
| GO:0005622 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: intracellular | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0005840 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: ribosome | SoyBase | N/A | ISS |
| GO:0022625 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytosolic large ribosomal subunit | SoyBase | N/A | ISS |
| GO:0003735 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: structural constituent of ribosome | SoyBase | N/A | ISS |
| KOG3499 | KOG | 60S ribosomal protein L38 | JGI | ISS | |
| PTHR10965 | Panther | 60S RIBOSOMAL PROTEIN L38 | JGI | ISS | |
| PF01781 | PFAM | Ribosomal L38e protein family | JGI | ISS | |
| UniRef100_A9P978 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Predicted protein n=2 Tax=fabids RepID=A9P978_POPTR | SoyBase | E_val: 3.00E-41 | ISS |
| UniRef100_B9RM38 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: 60S ribosomal protein L38, putative n=1 Tax=Ricinus communis RepID=B9RM38_RICCO | SoyBase | E_val: 4.00E-39 | ISS |
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Glyma08g10540 not represented in the dataset |
Glyma08g10540 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma05g27570 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.08g100000 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma08g10540.1 sequence type=CDS gene model=Glyma08g10540 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCCTAAGCAGATCCACGAGATTAAGGATTTTCTTCTGACGGCGCGGAGGAAGGATGCGAGGTCGGTGAAAATCAAGAGGAGCAGGGATGTCGTTAAGTTTAAGGTTCGATGCTCCAAGTACTTGTACACGCTTTGTGTCTTTGACCCTGAGAAAGCCGATAAGTTGAAGCAATCTCTTCCTCCCGGTTTGAGTGTTCAAGACCTGTAG
>Glyma08g10540.1 sequence type=predicted peptide gene model=Glyma08g10540 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MPKQIHEIKDFLLTARRKDARSVKIKRSRDVVKFKVRCSKYLYTLCVFDPEKADKLKQSLPPGLSVQDL*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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