SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G30280 | AT | Annotation by Michelle Graham. TAIR10: Chaperone DnaJ-domain superfamily protein | chr1:10662851-10664570 REVERSE LENGTH=455 | SoyBase | E_val: 6.00E-62 | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0031072 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: heat shock protein binding | SoyBase | N/A | ISS |
| KOG0431 | KOG | Auxilin-like protein and related proteins containing DnaJ domain | JGI | ISS | |
| PTHR23172 | Panther | AUXILIN/CYCLIN G-ASSOCIATED KINASE-RELATED | JGI | ISS | |
| PF00226 | PFAM | DnaJ domain | JGI | ISS | |
| UniRef100_G7IIX9 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Cyclin-G-associated kinase n=1 Tax=Medicago truncatula RepID=G7IIX9_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1K3H3 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K3H3_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma08g10495 not represented in the dataset |
Glyma08g10495 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma05g27500 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Glyma08g24900 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.08g099600 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma08g10495.2 sequence type=transcript gene model=Glyma08g10495 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high CATACATCAAACAATAATAATAAGAAACAAAGCACACGCTCCACATTGTGTTTTCCGGTGAATATTCCGTCAACTGCATGCACCGGTGAACGTCGCTGGAAATGGAGGAATCACAGAGAATTGGCATCGACTTAATGCGTGGTTTCCCTCGCCGGAGATCGGTGGAAAACCGGTCATCTTCCCGGCGAAGACGCTCCATCTTCTCCGGCGCCGGCAATTCGGAATCTGTGGACGCCGACGACTTCGCCGACGTCTTTGGTGGCCCACCGCGAACTCTCCTTGCGCACAAATTCTCGAGCTCCGGTTCCTTTTACGAGGAAGTTTTCCGGCCGCCAGAGTTCACGTGTCCGGCACCGAAGGATGGCCGGAGCTTGCCGGTGTTCAGGATTCCGGCGAGGAATGAGGGATTTTACAGCGACATATTCGGGTCGGACGATGACCGGAGATCGAGAGACCGGTCAAGGTCACTTTCGAAAGAGAATTCGTCGTCTGCGATGAGTTCGGAGGAGTTAAGCCCTCGCCGGCCGGCGATTGCAGATGACGTGGCACTTTCTGGTTTTGCTTCAAAGCTAAGGCCAATCAATATTCCATGGAGATGGAATCCATCCACTGTGATGCCTGAGGCTGAGGAATACCCAAGTAAACTTGGGGTGCCCCTTTTTGCATGCAAGGATCAGTCATTTGAAATTCAGCATCAGGACAATGAGTACAAGGAGAACTTCAGAAGCCCCCATTTAGGATCCTCAAGAAGAGTCTCATCCCCAGAAACCATTAGTCTTGAATCCAATTCATATCAAAGCACCAAAGTGTTCACTGATGACTGGGAGCTCAATTCCCCATTTTCTGTCGTCTCTTCGCTTTATCAAGAACCTGAGGCAAAATTTTCTGTGCATGATCGAGTGCTTTCAGAGCAAATTATAGAAGGTGATGACAACGACGATGATGATGATATTATGAACTCCTATGTCATTGAACTCAACTCCAACCTCAGAAGGGAAGAGTGTGGAGAATCAGCCATTGATGAAGCAATTGCATGGGCCAAAGAGAAGTTTCAATCGCAAAGCTCTGATGAAGAATCAAGTATGAGAAACGATGGCAAAGAGCAAACTGTTGGAATAGGAAGCTCTGATGCAAGTGAATACCATGACAATGGAATTGGAATAGTTCAAACTCAGGAGAAGCGACAGACAGAAACAGAGAAGTTGGACAGTGATATAAGATTGTGGTCATCTGGCAAGGAAACAGATATTAGGCTACTACTTTCAACATTACATCATATTCTAAGGCCTGAGAGTGGCTGGTATGCCATTCCTCTTAAGAGTCTATTAGAAAGCTCACAGGTGAAGAAGGCTTATCAGAAAGCAAGGTTATGCCTGCATCCAGACAAACTGCAGCAAAGAGGAGCGACACTCCTTCAGAAGTATGTAGCAGAGAAGGCTTTCTCAATTCTTCAGGATGCATGGGCTGCATTCATTTCCATAGATGTTTCCTTCTAACCAGTGGATGACTCTAATCTTGATAACTCAGTTTTGTCTTGAGATTTGTGGACAAACACCAAGCTTGACATTCGGAATGTCGGGAGTGTTTGTTGTTGACAAGCAGTATATATAGCTAAATACATGAAACTTGAACACATCAGCTCTTTTGTACAAATAGTTTACTGATGGATCTGCTGTTCTATTTATGTTTGTATCATAACTTCATAAGCTGTTTGTTGCTTTGGTAGGTATTGTTTCTGATGTAGTTAACATAAGGTAATTTGATTGGCCTTAGTATTTGATTTGTATATGATATGAAATGGAAGCAAGAGTTAGTTTGTATGTGATTCATATGGAAACCTATAACCCTATTGCAACTCCATCTCATTGACTACAGCTAAATTACATGTCATACTCAAGAGGTTTCAATCTCCTACATTTTATTAGGAAAAGAAAAATTATTCAATAACCAATATTAACACATGTAAATGCAATTACTATAAATTATTGAAAAAAAACTTATAACTACAATGTTTCAAATTCAATGCAATTATAAAATTAATTTGGATGCCTTTGGATTAAAGGAGATAATGGAAAGAATAGATTCCGCTGTAACTGCACAAAATTAGGGTTCTAGTACAGTGCTTTGCTTGCATCAAAATGCGTTATCTCCAGGCAATTTTTTCTATCTGTTTATATAATATATAAAGTGTGTGTTTGGACACACATAAAATGCATATGTTATACGATAAATAATGTCAAACAGGGAAAATAATGAATG
>Glyma08g10495.1 sequence type=CDS gene model=Glyma08g10495 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAGGAATCACAGAGAATTGGCATCGACTTAATGCGTGGTTTCCCTCGCCGGAGATCGGTGGAAAACCGGTCATCTTCCCGGCGAAGACGCTCCATCTTCTCCGGCGCCGGCAATTCGGAATCTGTGGACGCCGACGACTTCGCCGACGTCTTTGGTGGCCCACCGCGAACTCTCCTTGCGCACAAATTCTCGAGCTCCGGTTCCTTTTACGAGGAAGTTTTCCGGCCGCCAGAGTTCACGTGTCCGGCACCGAAGGATGGCCGGAGCTTGCCGGTGTTCAGGATTCCGGCGAGGAATGAGGGATTTTACAGCGACATATTCGGGTCGGACGATGACCGGAGATCGAGAGACCGGTCAAGGTCACTTTCGAAAGAGAATTCGTCGTCTGCGATGAGTTCGGAGGAGTTAAGCCCTCGCCGGCCGGCGATTGCAGATGACGTGGCACTTTCTGGTTTTGCTTCAAAGCTAAGTAATGGAATTCTGAGTGTTCCTAATGATTGCTACAGGCCAATCAATATTCCATGGAGATGGAATCCATCCACTGTGATGCCTGAGGCTGAGGAATACCCAAGTAAACTTGGGGTGCCCCTTTTTGCATGCAAGGATCAGTCATTTGAAATTCAGCATCAGGACAATGAGTACAAGGAGAACTTCAGAAGCCCCCATTTAGGATCCTCAAGAAGAGTCTCATCCCCAGAAACCATTAGTCTTGAATCCAATTCATATCAAAGCACCAAAGTGTTCACTGATGACTGGGAGCTCAATTCCCCATTTTCTGTCGTCTCTTCGCTTTATCAAGAACCTGAGGCAAAATTTTCTGTGCATGATCGAGTGCTTTCAGAGCAAATTATAGAAGGTGATGACAACGACGATGATGATGATATTATGAACTCCTATGTCATTGAACTCAACTCCAACCTCAGAAGGGAAGAGTGTGGAGAATCAGCCATTGATGAAGCAATTGCATGGGCCAAAGAGAAGTTTCAATCGCAAAGCTCTGATGAAGAATCAAGTATGAGAAACGATGGCAAAGAGCAAACTGTTGGAATAGGAAGCTCTGATGCAAGTGAATACCATGACAATGGAATTGGAATAGTTCAAACTCAGGAGAAGCGACAGACAGAAACAGAGAAGTTGGACAGTGATATAAGATTGTGGTCATCTGGCAAGGAAACAGATATTAGGCTACTACTTTCAACATTACATCATATTCTAAGGCCTGAGAGTGGCTGGTATGCCATTCCTCTTAAGAGTCTATTAGAAAGCTCACAGGTGAAGAAGGCTTATCAGAAAGCAAGGTTATGCCTGCATCCAGACAAACTGCAGCAAAGAGGAGCGACACTCCTTCAGAAGTATGTAGCAGAGAAGGCTTTCTCAATTCTTCAGGATGCATGGGCTGCATTCATTTCCATAGATGTTTCCTTCTAA >Glyma08g10495.2 sequence type=CDS gene model=Glyma08g10495 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAGGAATCACAGAGAATTGGCATCGACTTAATGCGTGGTTTCCCTCGCCGGAGATCGGTGGAAAACCGGTCATCTTCCCGGCGAAGACGCTCCATCTTCTCCGGCGCCGGCAATTCGGAATCTGTGGACGCCGACGACTTCGCCGACGTCTTTGGTGGCCCACCGCGAACTCTCCTTGCGCACAAATTCTCGAGCTCCGGTTCCTTTTACGAGGAAGTTTTCCGGCCGCCAGAGTTCACGTGTCCGGCACCGAAGGATGGCCGGAGCTTGCCGGTGTTCAGGATTCCGGCGAGGAATGAGGGATTTTACAGCGACATATTCGGGTCGGACGATGACCGGAGATCGAGAGACCGGTCAAGGTCACTTTCGAAAGAGAATTCGTCGTCTGCGATGAGTTCGGAGGAGTTAAGCCCTCGCCGGCCGGCGATTGCAGATGACGTGGCACTTTCTGGTTTTGCTTCAAAGCTAAGGCCAATCAATATTCCATGGAGATGGAATCCATCCACTGTGATGCCTGAGGCTGAGGAATACCCAAGTAAACTTGGGGTGCCCCTTTTTGCATGCAAGGATCAGTCATTTGAAATTCAGCATCAGGACAATGAGTACAAGGAGAACTTCAGAAGCCCCCATTTAGGATCCTCAAGAAGAGTCTCATCCCCAGAAACCATTAGTCTTGAATCCAATTCATATCAAAGCACCAAAGTGTTCACTGATGACTGGGAGCTCAATTCCCCATTTTCTGTCGTCTCTTCGCTTTATCAAGAACCTGAGGCAAAATTTTCTGTGCATGATCGAGTGCTTTCAGAGCAAATTATAGAAGGTGATGACAACGACGATGATGATGATATTATGAACTCCTATGTCATTGAACTCAACTCCAACCTCAGAAGGGAAGAGTGTGGAGAATCAGCCATTGATGAAGCAATTGCATGGGCCAAAGAGAAGTTTCAATCGCAAAGCTCTGATGAAGAATCAAGTATGAGAAACGATGGCAAAGAGCAAACTGTTGGAATAGGAAGCTCTGATGCAAGTGAATACCATGACAATGGAATTGGAATAGTTCAAACTCAGGAGAAGCGACAGACAGAAACAGAGAAGTTGGACAGTGATATAAGATTGTGGTCATCTGGCAAGGAAACAGATATTAGGCTACTACTTTCAACATTACATCATATTCTAAGGCCTGAGAGTGGCTGGTATGCCATTCCTCTTAAGAGTCTATTAGAAAGCTCACAGGTGAAGAAGGCTTATCAGAAAGCAAGGTTATGCCTGCATCCAGACAAACTGCAGCAAAGAGGAGCGACACTCCTTCAGAAGTATGTAGCAGAGAAGGCTTTCTCAATTCTTCAGGATGCATGGGCTGCATTCATTTCCATAGATGTTTCCTTCTAA
>Glyma08g10495.1 sequence type=predicted peptide gene model=Glyma08g10495 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MEESQRIGIDLMRGFPRRRSVENRSSSRRRRSIFSGAGNSESVDADDFADVFGGPPRTLLAHKFSSSGSFYEEVFRPPEFTCPAPKDGRSLPVFRIPARNEGFYSDIFGSDDDRRSRDRSRSLSKENSSSAMSSEELSPRRPAIADDVALSGFASKLSNGILSVPNDCYRPINIPWRWNPSTVMPEAEEYPSKLGVPLFACKDQSFEIQHQDNEYKENFRSPHLGSSRRVSSPETISLESNSYQSTKVFTDDWELNSPFSVVSSLYQEPEAKFSVHDRVLSEQIIEGDDNDDDDDIMNSYVIELNSNLRREECGESAIDEAIAWAKEKFQSQSSDEESSMRNDGKEQTVGIGSSDASEYHDNGIGIVQTQEKRQTETEKLDSDIRLWSSGKETDIRLLLSTLHHILRPESGWYAIPLKSLLESSQVKKAYQKARLCLHPDKLQQRGATLLQKYVAEKAFSILQDAWAAFISIDVSF* >Glyma08g10495.2 sequence type=predicted peptide gene model=Glyma08g10495 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MEESQRIGIDLMRGFPRRRSVENRSSSRRRRSIFSGAGNSESVDADDFADVFGGPPRTLLAHKFSSSGSFYEEVFRPPEFTCPAPKDGRSLPVFRIPARNEGFYSDIFGSDDDRRSRDRSRSLSKENSSSAMSSEELSPRRPAIADDVALSGFASKLRPINIPWRWNPSTVMPEAEEYPSKLGVPLFACKDQSFEIQHQDNEYKENFRSPHLGSSRRVSSPETISLESNSYQSTKVFTDDWELNSPFSVVSSLYQEPEAKFSVHDRVLSEQIIEGDDNDDDDDIMNSYVIELNSNLRREECGESAIDEAIAWAKEKFQSQSSDEESSMRNDGKEQTVGIGSSDASEYHDNGIGIVQTQEKRQTETEKLDSDIRLWSSGKETDIRLLLSTLHHILRPESGWYAIPLKSLLESSQVKKAYQKARLCLHPDKLQQRGATLLQKYVAEKAFSILQDAWAAFISIDVSF*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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