Glyma08g10470 - SoyBase

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Report for Sequence Feature Glyma08g10470

Feature Type:	gene_model
Chromosome:	Gm08
Start:	7591605
stop:	7594466
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g10470

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G30270	AT	Annotation by Michelle Graham. TAIR10: CBL-interacting protein kinase 23 \| chr1:10655270-10658524 FORWARD LENGTH=482	SoyBase	E_val: 2.00E-105	ISS
GO:0000911	GO-bp	Annotation by Michelle Graham. GO Biological Process: cytokinesis by cell plate formation	SoyBase	N/A	ISS
GO:0006468	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein phosphorylation	SoyBase	N/A	ISS
GO:0007165	GO-bp	Annotation by Michelle Graham. GO Biological Process: signal transduction	SoyBase	N/A	ISS
GO:0007584	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to nutrient	SoyBase	N/A	ISS
GO:0009414	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to water deprivation	SoyBase	N/A	ISS
GO:0009723	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to ethylene stimulus	SoyBase	N/A	ISS
GO:0009738	GO-bp	Annotation by Michelle Graham. GO Biological Process: abscisic acid mediated signaling pathway	SoyBase	N/A	ISS
GO:0010107	GO-bp	Annotation by Michelle Graham. GO Biological Process: potassium ion import	SoyBase	N/A	ISS
GO:0010118	GO-bp	Annotation by Michelle Graham. GO Biological Process: stomatal movement	SoyBase	N/A	ISS
GO:0016036	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular response to phosphate starvation	SoyBase	N/A	ISS
GO:0019375	GO-bp	Annotation by Michelle Graham. GO Biological Process: galactolipid biosynthetic process	SoyBase	N/A	ISS
GO:0019722	GO-bp	Annotation by Michelle Graham. GO Biological Process: calcium-mediated signaling	SoyBase	N/A	ISS
GO:0035556	GO-bp	Annotation by Michelle Graham. GO Biological Process: intracellular signal transduction	SoyBase	N/A	ISS
GO:0042631	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular response to water deprivation	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0009536	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plastid	SoyBase	N/A	ISS
GO:0004672	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein kinase activity	SoyBase	N/A	ISS
GO:0004674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine kinase activity	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
GO:0005524	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP binding	SoyBase	N/A	ISS
GO:0016301	GO-mf	Annotation by Michelle Graham. GO Molecular Function: kinase activity	SoyBase	N/A	ISS
GO:0016772	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring phosphorus-containing groups	SoyBase	N/A	ISS
KOG0583	KOG	Serine/threonine protein kinase	JGI		ISS
PTHR24343	Panther	SERINE/THREONINE KINASE	JGI		ISS
PTHR24343:SF133	Panther		JGI		ISS
PF00069	PFAM	Protein kinase domain	JGI		ISS
UniRef100_C0M519	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: CBL-interacting protein kinase 24 n=1 Tax=Populus euphratica RepID=C0M519_POPEU	SoyBase	E_val: 3.00E-109	ISS
UniRef100_I1KRW5	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KRW5_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma08g10470

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma08g10470 not represented in the dataset	Glyma08g10470 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma08g10470 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments

References for Glyma08g10470

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma08g10470

Limit To All Plant Sequences

>Glyma08g10470.1   sequence type=CDS   gene model=Glyma08g10470   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGAACGAGAAAATTCCATCAGTTTATGAACATGGTAGCTGTAGCAGAAGTGCTGAACCTGAACCTAGACCTAATGATTCCCGTATTCTGGGAAGAAAATACCATTTATACTGGGCGCTGGGTTTCGGAAGTTCCGCCATTGTGAAGCTTGCAAGTGACGTTACCACCGGACACGGCGTGGCCATCAAAATTTTCGACAAGGAATTCATTGACGGAAAGAAAAAATCTGTCAAGAAACGAATGAAAATCGCGCTTGAACGAGAAATATCAGCAATGACAATGCTTAGATCACACCCTAATGTCGTGCGTATAATTGAGGTGATGGCTACCACGACAAGGGTGTATATTGTAATGGAACTTGTAGTTGGTGGTGCAACACTGCTTGATAAAATTGGACGAACTTCGGGAATGTCAGAAACCCAAGCTAGACAGTATTTTCATCAGCTTATATGTGCTGTGGATTACTGTCACAGTAGAGGTGTTATCCATAGAGACCTGAATCCGTCAAATTTGTTGCTTGCTGCTGATGGAGTGCTTAAAGTGTCAGATTTTGGAATGACTGCACTGCCTCAACAAGCTAGACAAGATGGGCTGCTTCACTCAGCATGTGGTGCGCTTGATTATAAAGCCCCAGAGGTGATAAGGAACCGGGGCTATGAGGGTGAAAAGGCTGATATATGGTCATGTGGTGCTATTCTGTTTCATTTAGTTGCTGGTGATGTGCCCTTCACAAATGTATATGACGATCGCAATACTAAAATTAGACAGATTCTCCAGGCTGACTTCATCTGTCCCTCATTTTTCTCTGCAAGTTTAGTAGCACTGATTAGGAGAATCCTTGATCCCAATCCTACTACACGGATTACAATGAATGAGATCTTTGAGAATGAATGGTTCATGGAGAATTATGAGCCTCCTAGATTTTACAGGCAAAATTTTACTTTTGGTCATGATTCACAAAAGCGTGTTGCTAAGGGGCATGGAGCAGGGTCTTCAGCACCACCAGTGCCAGTCATGAATGCGTTTGAGATTTTGAATACATTTCTGGGCTACTACCTTATTATTGGAAAGCTTTTAAACCAGCTG

Predicted protein sequences of Glyma08g10470

Limit To All Plant Sequences

>Glyma08g10470.1   sequence type=predicted peptide   gene model=Glyma08g10470   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MENEKIPSVYEHGSCSRSAEPEPRPNDSRILGRKYHLYWALGFGSSAIVKLASDVTTGHGVAIKIFDKEFIDGKKKSVKKRMKIALEREISAMTMLRSHPNVVRIIEVMATTTRVYIVMELVVGGATLLDKIGRTSGMSETQARQYFHQLICAVDYCHSRGVIHRDLNPSNLLLAADGVLKVSDFGMTALPQQARQDGLLHSACGALDYKAPEVIRNRGYEGEKADIWSCGAILFHLVAGDVPFTNVYDDRNTKIRQILQADFICPSFFSASLVALIRRILDPNPTTRITMNEIFENEWFMENYEPPRFYRQNFTFGHDSQKRVAKGHGAGSSAPPVPVMNAFEILNTFLGYYLIIGKLLNQL

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