Glyma08g10450 - SoyBase

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Report for Sequence Feature Glyma08g10450

Feature Type:	gene_model
Chromosome:	Gm08
Start:	7577157
stop:	7587881
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g10450

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G30150	AT	Annotation by Michelle Graham. TAIR10: CONTAINS InterPro DOMAIN/s: Nucleolar 27S pre-rRNA processing, Urb2/Npa2 (InterPro:IPR018849); Has 58 Blast hits to 49 proteins in 21 species: Archae - 0; Bacteria - 2; Metazoa - 2; Fungi - 0; Plants - 44; Viruses - 3; Other Eukaryotes - 7 (source: NCBI BLink). \| chr4:14742452-14749764 FORWARD LENGTH=2009	SoyBase	E_val: 0	ISS
PF10441	PFAM	Urb2/Npa2 family	JGI		ISS
UniRef100_I1KRW3	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KRW3_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q10QA7	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Expressed protein n=2 Tax=Oryza sativa Japonica Group RepID=Q10QA7_ORYSJ	SoyBase	E_val: 7.00E-97	ISS

Expression Patterns of Glyma08g10450

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g10450

Paralog	Evidence	Comments
Glyma08g24860	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g10450 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g099200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g10450

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma08g10450

Limit To All Plant Sequences

>Glyma08g10450.2   sequence type=CDS   gene model=Glyma08g10450   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCAAAATCGTAAGCGAAAATACATATTCGACGCCCAACCTCGAGAAACTCCTAAACGGCACCGTTTGGAACGTCACAGTCCCTGGAACAACCTTAATCTTATACTCTGCATCCAAGACAAACACCATGATCTCTCCAGCAAGGTCAATCAAGCCTTCAATTTTGTGCAGTCCTATAATGGTGAGGATCGTAAAACCATAGAACTGCCAAGACTACTGTGTTATCTTAATGATTGGATATTGACATTGCTATTCCCTCCAAATGGGAAGAAAAACTGGGGCGATGGACAGACACCGCCGCAGTTTGAGGGAATTGATGCATATATGGATCTTCGTTGTTGGGAGATATTCAAGTTCTGTTTGCAGGAGTCTTTGAAGTTCCACGTCTCTTTGAGTATTCCCCGGAACCTCCTACAAACGGTTCAGTTCGTTGCCAGAAATGTTCTGTCACTGCTAGAGGATTCCTCTATCAGTTCAGGAGAACTTTTTATATCTGATGAAAGGTATAAACTGTGTGATACCACTCTTGACTGTGTTTCATTGGTTTTCTCGTCTCATGGTGGGTTGTCAAATAAAAACTTGGACTTGTGGGTTGAAACAGCCAGGGTGTTGCTTGAACTTGTGCTTAAAATGTATAGCAATAAACTTGATGGCAGCGACGTGGGTGCTTATGCACTACGCTTTCTGTGGTCGGTGCTTCAGCCATTCTCTAAGTTGAGGGTCCATCTAGCTAAGAAAGGATTTCATAACTTTGTGGATAAACTTCTTGAGCCACTGTTGCATTTATCAGGAGAGTTGCATCTTCAGGTTAATGAAAGTAATCCCATTTGGGCGTCGAGATTAATGGAGGCGGTGGAAGAAGTTCTTTCTCATGGACTGTTTCATCACATGCATATTCCTGAGTTTTTAAGCTTGCATGTTTCAGAAAACGATGATGCTTCATGTGATGATAAGTCAAATGACTCAAAGGCAACTATTAAGAGTTATACTAGACATTTATTTGATGTACTGAACAAAATTATAGCTAAGAAGAATGATATGGCAATGGGTAGCTTAGGCTTGTTATTTCACTTGTATGTTAATTCAGCAAGAAAATTCAAACTGGATGAAGGGCACCAGACAGTGGAGAATATAGATGGTTCAAGGCAACCAGTGCCAGGAAAACACTGTAGCTCAAATAATATTTCTGCAGACCTTCAAAACTCACTTTTCAATTTTTTTGTACTGATTATGGAACCCCTTTTGCTGAAGATTAATGCCTATATTCAAGTTGAAGTAGATGCTAATCCCCTGTTGTTGGATTTTCATGCTTTACTCAAGTCTATTGGTAAATTACTTGCTAGTTTTATGCAAGACAAAGTTTATGTGAGAACCGAGGACACATCTGGAGGAGCTTGTCTTAATTTCTTGAAGAAAATATTTAATACACTGATGACTAGTTTCACTAGTGTACTTCACTTCTCCAACTATGATACAACCAACAGGACGGAGATATCTAGTACTTTGCCTGCTAACGAGATTCTAGTTGCTATGGGATATCTTTTGCAAATTGAATATGAGGTTATTGGAGAAGACTTGGTAAATCTGTGGCTTCTCATGTTGTCATGCTCTGCCATCAATTGCAATTTGGTGAATGTTCCTGACCAATGCCCATTACCTTCCACTATACCTGCCCTGGGATGCCAAACAATTTATCTCTACAGTCAACTTCGCCAGGTGGAAATTGCTATTTTAGCATTGTGCAAAGCAATAAGGCTTGTTATATCTCACGAGGGTAATACTGAGGGTTCTTCCAGGTTCTTGGTATTTCTGTCGAATGAATTTCATTCTGAAGCAGTTGAAAGGCTGTTATCTTCAGAGAAGTTCATCAATGCCATTTATAAAGCTGTTGAATCTATTCCCGAAGGGCAAGTATGTGGTTGTATTAGACAAATAACAGAAGATATTTCAGAATCTCTCAGGTGGATGAAAGATTTCTGTCCATTGGTTGATGGCAAGAAATTGCAAATTTTTAATCTGCAAGGGGAACTGCTGGGTAGAGGGCTGTCTAGACTGTATTGTTTAGTTCTTGGTTCGGTTATTATCACCAACAGCAACCGCAATCTTCTTGGGGTTGCTGTAAATGAACTTATGGCATTAGTGCGTCCCTACTTGAGTATTCTAGTTGGGCAACAACCAGATACAATCTGCAAGTTCTTTTCTTCTGTCATAGGAGAAACTGTTGATCAGGTGGTTAGAAAGGGAAAAGTTTTAAAGAAATTTGGTAGGTCCAGTCAATGGGTCCTTGTGTTCTTCTTTCAGTTGTTTGTGTCCTGTCAAAGCTTATATAGGCAAGCAAGCCTTAGGCCTCCTGATATGCCAAAGATGTCTGCAGAGGTGGAGGATTACACAACATATTCTGCCTCTGAGTTGATGGAGAGGATTGATGAGATAGACTTTGGTTATTTTTCTTGGATTGTTCAACCCTCTTCTTCCCTCCTTGTTGTTATGCAATTTATTTCTGACATATATCTTAAACTTGGCTCAGATGATTTTTCCCCTTTGATCTATATATTTCAGTCTATGGCTCTTCGAAGGCTTGTTTACTTGAATAAGCAGATTAAATTGTTCAAGTATTTAAAAAAGAAACATTATTTGCAAAAGAAGTCTTATAGATCTCAAATCAAGACACTGAAAGAAGAGGCGGCTGGCCTTACTAATTTTATTTTGGAGTATTTATCGTGTGTGTATCAATCCCCAATCTTTGTTTCTGATTATGTAACTTGTGAAGATGTAGTTTCTGTGGTCACTCAAAGCATCCAAGACCACATAAAAGAAAGATGCAACCAATGGGATTGGGATCTAGGAGTGTATGCTGCTAACAAAAAATCATTGCCAACACTCATTTGGTCAAAGCTTTGCAAAAATGTTAATATTTGGAGCAACCATGCTTCAAAGAAGCAATTGAAAACATTCTTCTCACATTTACTCCATGCTTACCTTCACAGTGTAACAAGTAGTTTTCAAGAGCCAGGTGTGCAAGAAATTGACAAGTGTAAGCTGCTCAAGATGGTCACTTTGTCACAAATATCATCAGAACTTCTGAATGATTCCCTTTTTTACGAACAAAAATTTGTTTACAGGAGTCTGGCCTCGATGTTTTGCCATGCTTTAGAGAAATCTGTGCTCCCATTATTTAGTAACATTCCATGTACTGATGTCAATCTTCAGTCATTGCCTAATTGGCCAGAGTTTTTAAGTTCCCTTGACAACTCAGCAATGCTTGTTGATAAAAATAAAGAAATTCTGGTCGATTCTTCTGCAGTGGAAAGTTCAACCACTCATTCATGTGACAAACTTCCTGCAGATATCAGCAGAAAAGACAAGACTTTCCCTGTCACTGACAAAATTTTTAGAGATTGCCACCATTTGCTTGATCTCTTATGTCGGATGCAAGATAAAAATGCGAGATCATTTTCACATCTTCTGACTTGTATTTTCAACCTTGAACGGCTTCTTGTTGGTGCCTTGCTGTATTTTCAGAGTACAATGCACTGGGATTATTTTTTTGAGTATTTAAGATTATTTGTCTCTTGTCGGAAGACATTATGGCATATATTAATTGGATTTTATGATAAGGCAAACACTATCCCATTCTCGCCAAACTCGATTATTTCTGGAAGTTCGCTACCTGTATTGTGGCTTTCAAAGTCATTATCTGTAGTTGTTGGGATTAAAGAGGCACACTCAACCAAAAATATTATTCTCTGTAAATCTATGATGTTTTCCTTAATGCATTACACATCAAATGTCTTGTTCGGCATAGGAAAATATCAAATTGTTCACGCTTTTTCCATTAGTAAAGAAGCTGAGATGCCTTGTGAAGAGATCTCTAATCATAAGATTAGCCATGAGGAGAATCATTTGCTTCCATGTTCTCAGGACTCCCCCAAGCTTGAGGCATTGAAATGTTTAACCTTTATGGCTGAGAATTTGAGAGAGCAGATACAGAGCTTGCTTGTTTCTGTTCACAATACCCCTTGCAATGTCAATGTGGGATTTGGTCTTACTTATGAAAGCATTAATAGATTGTCCTCTTCAGCTTGTTGCTTTAGTAGACTTTTGTGGGGCCTACTCACATCTTCCACGGGCCAAACAGATGCTAAAGATAGTGATGAAAAAGAAAAAGTGTTGATGTGGAAAAGTGAGCATGCCTCTGAACTGGACAGTTGTATATCTTCTCTTGTGGAACTTACCAATGTTTTTGTAAACAAATTGCTTATCGAGAGTAATCAACTTTCCAAAAGTTCACACAATACACAACATTTTGAAGATCCAGCCGTGAAGTTATCCTTGTCAAGTACCAATTATTTGTCATCTAAAAGTTTAGTTTCTAAGGCTAATGCCTTAGTTGGTACACAAAATGAATCTACAGCTGCAGCTAGTTGCTTTACTTCATCAGCTGTTGATAATGTCTCCAAAAGTGTCAGTAATCATGGGAGAATGTTGAATCCAAATGGTGAAAACTCTGTTGCCAGGGTTTTGGCCAGGGTGGAATCCACTGAGCTACAGGGTTTGAATAAGCCTTTGTTGCAAAGCTTGGTAAAAGGTGATCACCCTGAAATAGCTTTTTTGCTGAGACAATTGTTAATTGTTTTCTCATCTCTTTTGAGGTTAAATTTGCTGAAAGATGATGGTTTCTTACCTTCTAGTTTTGTACCTACTTTCATTGAAATTTCACAAGTCCTGTTATTAGAATTTACAGAGATGGTTGTGGTCCCACAATATTCTGCTTTGCTTTTGTTAGATGGTGCTTGCAACTATTTGAGAGAATTAGCGGGTTATTTTCCTTTCACTGATCCTACCTCCTCTAGAAAAGTTTACACAAAATTGATACAGATTCACATGAGGGCAATAGGCAAGACCATTTCGTTGCAAGGAAAAAGGGCAACACTAACCTTTCATGAAAGACAGTCAAGTACCAAGTCACTTCATAAAGGATCAGTTGAAGCTTATTCTTTTACTGAATTGCACTGCTTTTCCTTGGATGAATTTAAAATTGGGCTGCGCAATTCATTCAAAGCATATATAGAGAGGCCATCTGAATTGCATCTTTTGTCTACTATACAGGCCATTGAGAGATCTCTAGTTGGTATTCATGAAGGATGTACTGTGATTTATGATATAACAACAAGTAAAGATGGGGGGGGAATTTCATCATTTGTAACAGCTGGCATTGAATGCTTTGTCATGATTCTTGAATTTGTTTCAGGTCGGAAAGGCTTGAAGATGATTAAAAGACACTGTCAGAGTTTTGTAGCTTCTGTTTTCAACATTATTGTACATTTACAGAGTCTGCCTATTTTTTATGATAACTTGGCATCTGGAAAAGTTGCCAGTACCCCTGATCCTGGGTCAGCCATTCTCTTGGGTGTTGAAGTACTGGTTACAGTTTCAAGAAAACATACTCTATTCCCAATGGATGTGTGGCATGTGGGTCACTTGTTACATATCCCTGCAGCACTCTTTCAGAACTTCTATCAGCTTAGAGTTACTAAAGCTTCTGGTCCATCAGAAACATTGATGATTTCAGATGAGCATATTTGTGATCAAGTAAAGAGAGTGGATTTCTGTCACGTAGATCACCAGTTCTTAGTTAACCTATTTGAAGTGTGTTGTGAACTATTGTATACCACTATTATGCATCGTCCAAGTGAGTGCAAACAGTGTGTTGCTCATCTTGAAGCTTCTGTTGCTGTTCTTCTTAATTGCTTGGAGAAAGTTTTAGATGATGAATCAATGATGAATAAAGTTTTCTTTTCTTCAGAAGAGGGAGTTGCATGTGCTTCTTCTCTTCGAAGAATTTATGAAGAGATAAACAAGCAAAAACATATCTTTGGTCGTCAATGTTCTCTGTTTTTATCCAATTACATATGGGTTTATTCAGGATATGGTGATCCCAAGAGAAGTGGCATCAGAAGAAGAGAAGTGGATGAATCTCTAAGACCGGGTGTCGATGCTTTAATAGATGCTTGCTCACGTGATGATATTCAATATCTTCATACTGTATTTGGGGAAGGACCTTGCAGAAATATCCTGTTAAGTCTTGTGGGTGATCGCAAACTTACCGAATTTAAAGGAAAAGTTTGA

Predicted protein sequences of Glyma08g10450

Limit To All Plant Sequences

>Glyma08g10450.2   sequence type=predicted peptide   gene model=Glyma08g10450   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MQNRKRKYIFDAQPRETPKRHRLERHSPWNNLNLILCIQDKHHDLSSKVNQAFNFVQSYNGEDRKTIELPRLLCYLNDWILTLLFPPNGKKNWGDGQTPPQFEGIDAYMDLRCWEIFKFCLQESLKFHVSLSIPRNLLQTVQFVARNVLSLLEDSSISSGELFISDERYKLCDTTLDCVSLVFSSHGGLSNKNLDLWVETARVLLELVLKMYSNKLDGSDVGAYALRFLWSVLQPFSKLRVHLAKKGFHNFVDKLLEPLLHLSGELHLQVNESNPIWASRLMEAVEEVLSHGLFHHMHIPEFLSLHVSENDDASCDDKSNDSKATIKSYTRHLFDVLNKIIAKKNDMAMGSLGLLFHLYVNSARKFKLDEGHQTVENIDGSRQPVPGKHCSSNNISADLQNSLFNFFVLIMEPLLLKINAYIQVEVDANPLLLDFHALLKSIGKLLASFMQDKVYVRTEDTSGGACLNFLKKIFNTLMTSFTSVLHFSNYDTTNRTEISSTLPANEILVAMGYLLQIEYEVIGEDLVNLWLLMLSCSAINCNLVNVPDQCPLPSTIPALGCQTIYLYSQLRQVEIAILALCKAIRLVISHEGNTEGSSRFLVFLSNEFHSEAVERLLSSEKFINAIYKAVESIPEGQVCGCIRQITEDISESLRWMKDFCPLVDGKKLQIFNLQGELLGRGLSRLYCLVLGSVIITNSNRNLLGVAVNELMALVRPYLSILVGQQPDTICKFFSSVIGETVDQVVRKGKVLKKFGRSSQWVLVFFFQLFVSCQSLYRQASLRPPDMPKMSAEVEDYTTYSASELMERIDEIDFGYFSWIVQPSSSLLVVMQFISDIYLKLGSDDFSPLIYIFQSMALRRLVYLNKQIKLFKYLKKKHYLQKKSYRSQIKTLKEEAAGLTNFILEYLSCVYQSPIFVSDYVTCEDVVSVVTQSIQDHIKERCNQWDWDLGVYAANKKSLPTLIWSKLCKNVNIWSNHASKKQLKTFFSHLLHAYLHSVTSSFQEPGVQEIDKCKLLKMVTLSQISSELLNDSLFYEQKFVYRSLASMFCHALEKSVLPLFSNIPCTDVNLQSLPNWPEFLSSLDNSAMLVDKNKEILVDSSAVESSTTHSCDKLPADISRKDKTFPVTDKIFRDCHHLLDLLCRMQDKNARSFSHLLTCIFNLERLLVGALLYFQSTMHWDYFFEYLRLFVSCRKTLWHILIGFYDKANTIPFSPNSIISGSSLPVLWLSKSLSVVVGIKEAHSTKNIILCKSMMFSLMHYTSNVLFGIGKYQIVHAFSISKEAEMPCEEISNHKISHEENHLLPCSQDSPKLEALKCLTFMAENLREQIQSLLVSVHNTPCNVNVGFGLTYESINRLSSSACCFSRLLWGLLTSSTGQTDAKDSDEKEKVLMWKSEHASELDSCISSLVELTNVFVNKLLIESNQLSKSSHNTQHFEDPAVKLSLSSTNYLSSKSLVSKANALVGTQNESTAAASCFTSSAVDNVSKSVSNHGRMLNPNGENSVARVLARVESTELQGLNKPLLQSLVKGDHPEIAFLLRQLLIVFSSLLRLNLLKDDGFLPSSFVPTFIEISQVLLLEFTEMVVVPQYSALLLLDGACNYLRELAGYFPFTDPTSSRKVYTKLIQIHMRAIGKTISLQGKRATLTFHERQSSTKSLHKGSVEAYSFTELHCFSLDEFKIGLRNSFKAYIERPSELHLLSTIQAIERSLVGIHEGCTVIYDITTSKDGGGISSFVTAGIECFVMILEFVSGRKGLKMIKRHCQSFVASVFNIIVHLQSLPIFYDNLASGKVASTPDPGSAILLGVEVLVTVSRKHTLFPMDVWHVGHLLHIPAALFQNFYQLRVTKASGPSETLMISDEHICDQVKRVDFCHVDHQFLVNLFEVCCELLYTTIMHRPSECKQCVAHLEASVAVLLNCLEKVLDDESMMNKVFFSSEEGVACASSLRRIYEEINKQKHIFGRQCSLFLSNYIWVYSGYGDPKRSGIRRREVDESLRPGVDALIDACSRDDIQYLHTVFGEGPCRNILLSLVGDRKLTEFKGKV*

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