SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G44660 | AT | Annotation by Michelle Graham. TAIR10: ALG6, ALG8 glycosyltransferase family | chr2:18420832-18422827 REVERSE LENGTH=506 | SoyBase | E_val: 0 | ISS |
| GO:0000226 | GO-bp | Annotation by Michelle Graham. GO Biological Process: microtubule cytoskeleton organization | SoyBase | N/A | ISS |
| GO:0006457 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein folding | SoyBase | N/A | ISS |
| GO:0009408 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to heat | SoyBase | N/A | ISS |
| GO:0009644 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to high light intensity | SoyBase | N/A | ISS |
| GO:0034976 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to endoplasmic reticulum stress | SoyBase | N/A | ISS |
| GO:0042542 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to hydrogen peroxide | SoyBase | N/A | ISS |
| GO:0051322 | GO-bp | Annotation by Michelle Graham. GO Biological Process: anaphase | SoyBase | N/A | ISS |
| GO:0005789 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: endoplasmic reticulum membrane | SoyBase | N/A | ISS |
| GO:0016757 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring glycosyl groups | SoyBase | N/A | ISS |
| GO:0016758 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring hexosyl groups | SoyBase | N/A | ISS |
| KOG2576 | KOG | Glucosyltransferase - Alg8p | JGI | ISS | |
| PTHR12413 | Panther | DOLICHYL GLYCOSYLTRANSFERASE | JGI | ISS | |
| PF03155 | PFAM | ALG6, ALG8 glycosyltransferase family | JGI | ISS | |
| UniRef100_G7KFZ6 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Dolichyl pyrophosphate Glc1Man9GlcNAc2 alpha-1,3-glucosyltransferase n=1 Tax=Medicago truncatula RepID=G7KFZ6_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1KRW2 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1KRW2_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma08g10420 not represented in the dataset |
Glyma08g10420 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma05g27431 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.08g098700 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma08g10420.1 sequence type=CDS gene model=Glyma08g10420 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGGAAAAGAGAAACTAAGCTTCAAAGAAGTTCACCATTCTCATAGTCCCAAAACTACTCTATGGTGGTTCTTTCTTGTAGCTACCTGCATAAAAGTTCTCCTTTTCCCATCCTATCGTAGTACAGATTTTGAAGTGCACCGCAACTGGCTGGCTTTGACTCACTCCCTCCCTCTTTCCCAGTGGTACTTTGATGAGACAAGTCCATGGACTCTTGATTACCCACCATTCTTTGCCTATTTTGAACGATTTCTATCCATTTTTGCTCACCTCATTGATCCCCAAATAGTGCACCTTCAGAATGGCCTTAATTATAGCTCCAACAAGGTGGTTTATTTCCAAAGAGTTACTGTAATACTTTCGGATTTGTCTCTTCTTTATGGGGTTTACAGACTTACTCGGAATCTGGATTCAAGAAAGCAGCAGTTGATCTGGTCATTGGTTATTTGGTCACCTATGCTTTTTATAGTGGACCATGTGCATTTCCAGTACAATGGATTTCTCATTGGGATTTTGTTGATCTCACTTTCATATTTGGAGGAAGGAAGGGATTTGTTAGGTGGTTTTGTTTTTGCTGTTCTCTTGTGCTTTAAGCATTTATTTGCAGTGGCAGCACCCATATATTTTGTTTATTTGTTGAGACACTATTGTTGGGGTGGAATGGTAAGAGGCTTCAGGCGACTTTTGATTATGGGAGGAGTGGTTACAGCAGTGTTTGCATCTGCATTTGGACCATTTTTCCACCTTGGACAGATACAACAAGTCATTCAACGGTTGTTTCCATTTGGCAGGGGGCTTTGCCATGCATACTGGGCCCCAAATTTTTGGGTATTCTATATCATGTCAGACAAAGGGCTTGCTTTCATATTCAGAAAACTTGGCTTTAACGTCCAGACACCAACAGGTTCATTCACTGCTGGTCTAGTAGGGGATTCCTCACCATTTTCTGTACTACCTCAGATCAAACCATCTGTGACCTTCATAATGGTTCTTCTTGCCTTATCTCCTTGCCTTTTCAAGGCTTGGAAGAATCCACAGCCACAGATGATTAGTAGATGGATAGCCTATGCTTATACATGTGGCTTTCTTTTTGGGTGGCATGTACATGAGAAGGCATCACTCCATTTTGTAATACCACTTGCAATTGTTGCGGCACAAACTCTGGAGGATGCAAGACATTACTTTTTGCTGTCAATAGTATCTTGCTATTCAATTTTTCCACTACTATTTGAGGCACGAGAGTATCCGATCAAAGTATTGTTGCTGCTTCTGCACTCCATTTTAATGTGGTCAGGATTTTCAGCACAATTTTATGATGGGGCTGAAGCTACAAGAGTGCCAACTGCTAATTCAAAGAAAAAAGCTGATCAATTTGGATCTGAAGGTAATTCGGGTGCAACTGTGAAGAAAGGTTTTGCTATTGGCTGGATTGAGAGGATTTATCTGATAGGTCTTGTAGTTGTAGAGATATGGGGCCAAATTTTACACCCTCTACTTTTTGGTGATAAGTTTGCATTTGCACCCCTCATGTTGATCTCCATATACTGTGCTTTTGGGATCATGTACTCTTGGATTTGGCAGTTGATATCCATAGTTAAATGTCGTTGA
>Glyma08g10420.1 sequence type=predicted peptide gene model=Glyma08g10420 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MGKEKLSFKEVHHSHSPKTTLWWFFLVATCIKVLLFPSYRSTDFEVHRNWLALTHSLPLSQWYFDETSPWTLDYPPFFAYFERFLSIFAHLIDPQIVHLQNGLNYSSNKVVYFQRVTVILSDLSLLYGVYRLTRNLDSRKQQLIWSLVIWSPMLFIVDHVHFQYNGFLIGILLISLSYLEEGRDLLGGFVFAVLLCFKHLFAVAAPIYFVYLLRHYCWGGMVRGFRRLLIMGGVVTAVFASAFGPFFHLGQIQQVIQRLFPFGRGLCHAYWAPNFWVFYIMSDKGLAFIFRKLGFNVQTPTGSFTAGLVGDSSPFSVLPQIKPSVTFIMVLLALSPCLFKAWKNPQPQMISRWIAYAYTCGFLFGWHVHEKASLHFVIPLAIVAAQTLEDARHYFLLSIVSCYSIFPLLFEAREYPIKVLLLLLHSILMWSGFSAQFYDGAEATRVPTANSKKKADQFGSEGNSGATVKKGFAIGWIERIYLIGLVVVEIWGQILHPLLFGDKFAFAPLMLISIYCAFGIMYSWIWQLISIVKCR*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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