Glyma08g10350 - SoyBase

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Report for Sequence Feature Glyma08g10350

Feature Type:	gene_model
Chromosome:	Gm08
Start:	7480408
stop:	7488251
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g10350

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G18390	AT	Annotation by Michelle Graham. TAIR10: TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2 \| chr4:10163212-10164309 REVERSE LENGTH=365	SoyBase	E_val: 3.00E-74	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0006417	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of translation	SoyBase	N/A	ISS
GO:0009657	GO-bp	Annotation by Michelle Graham. GO Biological Process: plastid organization	SoyBase	N/A	ISS
GO:0009965	GO-bp	Annotation by Michelle Graham. GO Biological Process: leaf morphogenesis	SoyBase	N/A	ISS
GO:0030154	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell differentiation	SoyBase	N/A	ISS
GO:0045893	GO-bp	Annotation by Michelle Graham. GO Biological Process: positive regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0045962	GO-bp	Annotation by Michelle Graham. GO Biological Process: positive regulation of development, heterochronic	SoyBase	N/A	ISS
GO:0048366	GO-bp	Annotation by Michelle Graham. GO Biological Process: leaf development	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
PF03634	PFAM	TCP family transcription factor	JGI		ISS
UniRef100_I1KRV6	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1KRV6_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_J7F3K5	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: TCP transcription factor n=1 Tax=Camellia sinensis RepID=J7F3K5_CAMSI	SoyBase	E_val: 5.00E-107	ISS

Expression Patterns of Glyma08g10350

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g10350

Paralog	Evidence	Comments
Glyma05g27367	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g10350 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g097900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g10350

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma08g10350

Limit To All Plant Sequences

>Glyma08g10350.1   sequence type=CDS   gene model=Glyma08g10350   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGGAGGAGGATGAGATTCTTCAAGCACGGGCGTGTAAGTTGCCAAGAAGAAGAGGCAGTGATGGGGAGAGCACGAACAGCAGGTTCCACAGCAGCAGCTGGCACCACCACAACTCTTCGAGGATCATAAGGGTGTCTCGAGCATCTGGTGGCAAAGACAGGCACAGCAAGGTTATGACTTCAAAAGGGTTGAGAGATAGAAGGGTTAGGCTTTCTGTGAACACTGCCATTCAGTTCTATGACCTTCAAGATCGCTTGGGTTATGACCAACCTAGTAAAGCTGTGGAGTGGCTTATCAAATCTGCTTCTGATGCCATTTCTGAACTTCCTTCTTTGAACAATTTCCCTGACACTCCCCAAAGTGATGATCATGAGAAGAGGGAAAACACCGCTGATGTTGCTGTTGGGGTAGTAGATGGTGAGAATGGCAATGGCCAGAACTTGAGTTTGGCTAAATCTGCTTGTAGTAGCAATTCTGAGACTAGCAAAGGTTCTGGCTTGTCCCTCTCAAGGTCTGATATTCGTGTGAAGGCTAGAGAGAGGGCAAGGGAGAGAACAACAAAGGAAAAGGAGAAAGAGAAAGAGAAAAATGATGAGTCTCATCGTCATCATCACAATGTTGTTGTTGTTCCTCATCACAACCACAATGTGAACCTCGTTTCACAAACAGCTTCTTTCACGGAGCTACTCACTGGCAGTGATCCCAACAAAGGGTGTGATGAGGCTAATAACAACATGATGTTCAACAAAGCAGCAGGTAGACTGCAATGGTGTTCATCAACAACACCTATGGACTACTTTCTGGGGCTTTCCTCTTCTAGAACAACGACACACAATCACAATCACCTTCATCATCATCAATATTCTTCTTCTTCTTCTAGTGGGTTCTCATTGGCACAAATCCAACTAGGACATTCTCTTCCTGAGGCAATGAATCATGTTTCAGCATTCAACAACAATGTGAGTGGTGATAACCACAACCACTCATCATCAGATCCTCATCTGCAGCAGCAACACTTGTCATTGATACCGGATCATCTTATGTCAGCTGTGGTTACTTCTTCTGCTGCTTCTTCTCATCATCATCATCATCATCAGCCCAGCGGGAACGATTACAATCTGAACTCCACCATGTCTTCGGGCCTCGCTGGTTACAATAGGGGGACCCTTCAGTCCAATTCTCCGTCTCTGCTGCCTCACTCGCAGAGGTTTTCGCCTATAGACGGATCCACTGTACCTTTCTTCATTGGAGCTGCTTCTTCTGCTGCTGCAGTTGCTGCTCCTGCCATGGAGAACAACAACAACAACAACCATCACCAGCATCAGTTCTCTTCTGTTTTTGATGGCAGCCGCTTGCAACTTTACTATGGCCATTCTGACCAGAAGGGGAAAGCCAAGAACTGA

Predicted protein sequences of Glyma08g10350

Limit To All Plant Sequences

>Glyma08g10350.1   sequence type=predicted peptide   gene model=Glyma08g10350   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEEEDEILQARACKLPRRRGSDGESTNSRFHSSSWHHHNSSRIIRVSRASGGKDRHSKVMTSKGLRDRRVRLSVNTAIQFYDLQDRLGYDQPSKAVEWLIKSASDAISELPSLNNFPDTPQSDDHEKRENTADVAVGVVDGENGNGQNLSLAKSACSSNSETSKGSGLSLSRSDIRVKARERARERTTKEKEKEKEKNDESHRHHHNVVVVPHHNHNVNLVSQTASFTELLTGSDPNKGCDEANNNMMFNKAAGRLQWCSSTTPMDYFLGLSSSRTTTHNHNHLHHHQYSSSSSSGFSLAQIQLGHSLPEAMNHVSAFNNNVSGDNHNHSSSDPHLQQQHLSLIPDHLMSAVVTSSAASSHHHHHHQPSGNDYNLNSTMSSGLAGYNRGTLQSNSPSLLPHSQRFSPIDGSTVPFFIGAASSAAAVAAPAMENNNNNNHHQHQFSSVFDGSRLQLYYGHSDQKGKAKN*

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