SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G46180 | AT | Annotation by Michelle Graham. TAIR10: ornithine-delta-aminotransferase | chr5:18718766-18721271 REVERSE LENGTH=475 | SoyBase | E_val: 0 | ISS |
| GO:0006561 | GO-bp | Annotation by Michelle Graham. GO Biological Process: proline biosynthetic process | SoyBase | N/A | ISS |
| GO:0006593 | GO-bp | Annotation by Michelle Graham. GO Biological Process: ornithine catabolic process | SoyBase | N/A | ISS |
| GO:0006635 | GO-bp | Annotation by Michelle Graham. GO Biological Process: fatty acid beta-oxidation | SoyBase | N/A | ISS |
| GO:0007031 | GO-bp | Annotation by Michelle Graham. GO Biological Process: peroxisome organization | SoyBase | N/A | ISS |
| GO:0009626 | GO-bp | Annotation by Michelle Graham. GO Biological Process: plant-type hypersensitive response | SoyBase | N/A | ISS |
| GO:0009651 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to salt stress | SoyBase | N/A | ISS |
| GO:0009816 | GO-bp | Annotation by Michelle Graham. GO Biological Process: defense response to bacterium, incompatible interaction | SoyBase | N/A | ISS |
| GO:0010260 | GO-bp | Annotation by Michelle Graham. GO Biological Process: organ senescence | SoyBase | N/A | ISS |
| GO:0019544 | GO-bp | Annotation by Michelle Graham. GO Biological Process: arginine catabolic process to glutamate | SoyBase | N/A | ISS |
| GO:0042538 | GO-bp | Annotation by Michelle Graham. GO Biological Process: hyperosmotic salinity response | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0005739 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion | SoyBase | N/A | ISS |
| GO:0004587 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ornithine-oxo-acid transaminase activity | SoyBase | N/A | ISS |
| GO:0008270 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: zinc ion binding | SoyBase | N/A | ISS |
| KOG1402 | KOG | Ornithine aminotransferase | JGI | ISS | |
| PTHR11986 | Panther | AMINOTRANSFERASE CLASS III | JGI | ISS | |
| PTHR11986:SF18 | Panther | AMINOTRANSFERASE | JGI | ISS | |
| PF00202 | PFAM | Aminotransferase class-III | JGI | ISS | |
| UniRef100_I1KRV5 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KRV5_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_Q38IW9 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Ornithine aminotransferase n=1 Tax=Glycine max RepID=Q38IW9_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma08g10340 not represented in the dataset |
Glyma08g10340 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma05g27360 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.08g097800 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma08g10340.1 sequence type=CDS gene model=Glyma08g10340 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCTGCCACGAGACCGGTGCAGTGTTTGTTACGAAGGGTTTGCAGAGGAAGTAGGACTATTGGGGTTGCCACAGAAGTTAATGCTTCTTCTTCTTCTCAGAAAATCATCGACAAGGAATATGAACACAGTGCTCACAATTACCATCCTCTTCCGATTGTATTTGCTCAAGCAAAGGGAACCTCTGTTTGGGATCCAGAGGGAAACAAATATCTTGATTTTCTATCAGGTTACTCTGCTGTTAATCAGGGACACTGCCATCCTAAAATTCTGAAAGCATTGCAAGAACAGGCAGAAAGGTTGACTGTGAGCTCTCGAGCCTTCTACAATGATCGCTTCCCAGACTTTGCTGAGTATGTGACAAACATGTTTGGTTATGATATGGTACTTCCTATGAATACCGGTGCTGAAGGTGTGGAAACAGCACTGAAGTTAGCACGAAAGTGGGGTTACGAAAAGAAAAGAATTCCCAAAGATGAGGCTATTATTGTCTCATGTTGTGGCTGCTTCCATGGTCGTACACTAGGTGTCATATCTTTGAGCTGTGACAATGAAGCTACCCGTGGTTTTGGTCCTTTATTACCTGGCAATCTTAAAGTTGATTTTGGTGATGCAGAAGCCCTTGAACAAATTTTTAAAGAAAAAGGAGAGCACATAGCTGCATTTATTTTAGAACCTGTCCAAGGTGAAGCTGGGGTGATATTTCCTCCAGATGGTTATTTAAAAGCTGTTAGAGATCTTTGCTCCAAATATAATGTCTTGATGATTGCTGATGAAATTCAAACTGGGTTAGCAAGAACGGGGAAGATGCTGGCTTGTGAGTGGGAAGAAGTTCGCCCAGATGTTCTGATACTAGGGAAAGCATTGGGTGGAGGAGTTATACCAGTTAGTGCAGTTCTTGCAGACAAAGATGTGATGCTTTGTATACAACCTGGACAGCATGGAAGTACCTTTGGTGGAAATCCAATGGCCAGTGCAGTTGCAATTGCCTCTCTAGAAGTAATAAAAAATGAGAGACTCGTTGAGAGATCTGCCCAAATGGGAGAGGAGCTTACTGGTCAGCTGCTTAAGATTCAGCAGCAATACCCAGACTATGTGAAGGAGGTACGGGGAAGAGGATTGTTCATTGGAGTGGAGTTTAACAGCAAAAAATTGTTCCCAGTATCAGGCTATGAGCTATGCAAAAAATTGAAGTATAGAGGAGTCCTTGCCAAGCCAACACATGATGCAATTATCCGCTTTACTCCCCCACTTTGCATAAGTGTGGATGAGATCCAACAAGGTTCCAAGGCACTGGCTGATGTTCTGGAAATTGATCTACCAAAGTTGCAGAAGACAAAGCCAATAGATGCTGCTCCAGTTGCCACTAGTGCATGCGATCGTTGTGGTAGAGTCTTGTATTAA
>Glyma08g10340.1 sequence type=predicted peptide gene model=Glyma08g10340 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAATRPVQCLLRRVCRGSRTIGVATEVNASSSSQKIIDKEYEHSAHNYHPLPIVFAQAKGTSVWDPEGNKYLDFLSGYSAVNQGHCHPKILKALQEQAERLTVSSRAFYNDRFPDFAEYVTNMFGYDMVLPMNTGAEGVETALKLARKWGYEKKRIPKDEAIIVSCCGCFHGRTLGVISLSCDNEATRGFGPLLPGNLKVDFGDAEALEQIFKEKGEHIAAFILEPVQGEAGVIFPPDGYLKAVRDLCSKYNVLMIADEIQTGLARTGKMLACEWEEVRPDVLILGKALGGGVIPVSAVLADKDVMLCIQPGQHGSTFGGNPMASAVAIASLEVIKNERLVERSAQMGEELTGQLLKIQQQYPDYVKEVRGRGLFIGVEFNSKKLFPVSGYELCKKLKYRGVLAKPTHDAIIRFTPPLCISVDEIQQGSKALADVLEIDLPKLQKTKPIDAAPVATSACDRCGRVLY*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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