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Report for Sequence Feature Glyma08g10310

Feature Type:gene_model
Chromosome:Gm08
Start:7450379
stop:7451098
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G30190AT Annotation by Michelle Graham. TAIR10: unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G34610.1); Has 56 Blast hits to 56 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 44; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink). | chr1:10618966-10619802 FORWARD LENGTH=278 SoyBaseE_val: 1.00E-13ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
PF05553PFAM Cotton fibre expressed protein JGI ISS
UniRef100_I1KRV2UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KRV2_SOYBN SoyBaseE_val: 1.00E-150ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Corresponding NameAnnotation VersionEvidenceComments
Glyma.08g097500 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma08g10310.2   sequence type=CDS   gene model=Glyma08g10310   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCCAAACCCACCATGTCTAGCGGAAGATTCTATCAAATACTACAAACCAAAAGATCATACACAAAAAACAAAGGGTTTTTCCATCTTTGCCTCTGTCCTTTCTCTTATTATCTACATCTCTTTGTTCTATATTTTTAATATCTCCCCATACACTCTCTTAAACAACTACATCTTTTGGTTTTTTTTATCCAACAATATCATCCTCATTATAGCCGTAGACTCTGGAGTATTCTCTTCATTGGAACAGGAACAAGATCCTTATGAACAATACCATGTCTCCAACTACCAACAAGTTGATGATAAAAAATGCATCAACCCCAAGATGGGTGGAGAAATGGTGCAAGAGATCAACAAATATACCATCACTGAGAACAATACTGTTCCTGAATGTGTGATTGAAGTTGTGGTGCAAAATGAATTGCCAAAGGAAATTAGTGAAGGATACTCCAATAATGTGAAAAGGCCGTTACTTCCATTGGAAGTACATGATAGTGATAGAGCATGTAAAGAGAAACATGTCCCTGCCAGATTTAAATGTGATAGACCACATAGAATTAAGCGTGTGAATGATGAGAGCATGAAGAGGAGAAGGTCAGCAACAACGAAGATAGAAGCAGAAGTAGATGAAGAGAATGAGTTTAATAGTATGACAAATGAGGAGCTCAATAGGAGAGTTGAGGAGTTTATTCAGAAATGCAGATTAGACTTCAGGCAATGA

>Glyma08g10310.2   sequence type=predicted peptide   gene model=Glyma08g10310   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MPNPPCLAEDSIKYYKPKDHTQKTKGFSIFASVLSLIIYISLFYIFNISPYTLLNNYIFWFFLSNNIILIIAVDSGVFSSLEQEQDPYEQYHVSNYQQVDDKKCINPKMGGEMVQEINKYTITENNTVPECVIEVVVQNELPKEISEGYSNNVKRPLLPLEVHDSDRACKEKHVPARFKCDRPHRIKRVNDESMKRRRSATTKIEAEVDEENEFNSMTNEELNRRVEEFIQKCRLDFRQ*







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