Report for Sequence Feature Glyma08g10260
Feature Type: gene_model
Chromosome: Gm08
Start: 7418112
stop: 7420058
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma08g10260
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT4G21065 AT
Annotation by Michelle Graham. TAIR10: Tetratricopeptide repeat (TPR)-like superfamily protein | chr4:11245976-11247763 FORWARD LENGTH=595
SoyBase E_val: 3.00E-100 ISS
PTHR24015 Panther
FAMILY NOT NAMED
JGI ISS
PF01535 PFAM
PPR repeat
JGI ISS
UniRef100_G7I6Z3 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Pentatricopeptide repeat-containing protein n=1 Tax=Medicago truncatula RepID=G7I6Z3_MEDTR
SoyBase E_val: 7.00E-102 ISS
UniRef100_I1KRU7 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=2 Tax=Glycine max RepID=I1KRU7_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma08g10260
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Gene model name correspondences to Glyma08g10260 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.08g096900 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma08g10260
Coding sequences of Glyma08g10260
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma08g10260.1 sequence type=CDS gene model=Glyma08g10260 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGAGTATCTGCACCCTCATCCACCGCTCCAAAACCCTCACTCAGCTCCTCCAACTTCACGCCCTCTTCCTCAAAACCTCCCTCGACCACCACCCTTTCTTCATCTCCCAGTTCCTCTTACAATCCTCCACCATCTCCCTCCCTTTCGCCGCCTCCTTCTTCCACTCCCTCCCCACCCTCCCACCCCTCTTCGCCTGGAACACCCTCATCAGAGCCTTCGCCGCCACCCCAACACCCTTCCACTCCCTCACCCTCTTCCGCCTCCTCCAAACCTCTCCCCTCAACCCCGACAACTTCACCTACCCTTTCGTCCTCAAGGCCTGCGCTCGCTCTTCCTCCCTCCCCCTCGGTGGGACCCTCCATTCTCTCACCCTCAAGACCGGTTTCCGTTCCCACCGCCATGTGGGTAATGCCCTTTTGAACATGTATGCGGAATGCTACGCTGTTATGTCCGCGCGCATGGTGTTCGATGAAATGACTGATAGAGATGTTGTCTCCTGGAGCTCCTTGATTGCTGCCTACGTCGCTAGCAACTCCCCCTTGGATGCTTTTTACGTCTTTCGTGAAATGGGGATGGAGAATGAACAGCCGAACTCAGTCACGTTGGTGAGCTTGCTATCTGCTTGTACTAAAACGCTCAATCTCAGGGTCGGCGAGTCCATTCATTCGTACGTTACAAGCAATGGCATAGAAATGGATGTTGCGTTGGGAACAGCCTTGTTTGAGATGTATGCTAAATGTGGGGAGATTGATAAGGCTCTTTTGGTTTTCAATTCAATGGGTGACAAGAATTTGCAGTCGTGCACTATCATGATCTCGGCTCTCGCGGATCACGGGCGAGAAAAGGATGTTATCTCTTTGTTTACCCAGATGGAGGACGGTGGATTGCGGCTGGATAGTTTGTCTTTTGCCGTGATTCTCTCGGCCTGCAGCCACATGGGACTTGTTGATGAAGGCAAAATGTATTTTGATCGGATGGTGAGAGTGTATGGCATAAAACCGAGTGTTGAGCATTATGGATGCATGGTTGACTTGCTAGGAAGAGCTGGCTTCATTCAAGAAGCTTATGATATCATCAAGGGCATGCCCATGGAGCCCAATGATGTTATATTGAGGAGTTTTCTTGGGGCTTGCAGAAATCACGGGTGGGTTCCTAGTTTGGATGATGATTTTCTGTCTGAACTGGAGTCTGAGTTGGGGGCCAACTATGTGCTCACTGCTAATGTTTTTTCCACCTGTGCTTCATGGAAGGATGCCAATGACTTGAGGGTAGCCATGAAACTGAAAGGGTTGAAGAAAGTTCCTGGTTGTAGTTGGGTGGAGGTGCAAAATTGA
Predicted protein sequences of Glyma08g10260
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma08g10260.1 sequence type=predicted peptide gene model=Glyma08g10260 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MSICTLIHRSKTLTQLLQLHALFLKTSLDHHPFFISQFLLQSSTISLPFAASFFHSLPTLPPLFAWNTLIRAFAATPTPFHSLTLFRLLQTSPLNPDNFTYPFVLKACARSSSLPLGGTLHSLTLKTGFRSHRHVGNALLNMYAECYAVMSARMVFDEMTDRDVVSWSSLIAAYVASNSPLDAFYVFREMGMENEQPNSVTLVSLLSACTKTLNLRVGESIHSYVTSNGIEMDVALGTALFEMYAKCGEIDKALLVFNSMGDKNLQSCTIMISALADHGREKDVISLFTQMEDGGLRLDSLSFAVILSACSHMGLVDEGKMYFDRMVRVYGIKPSVEHYGCMVDLLGRAGFIQEAYDIIKGMPMEPNDVILRSFLGACRNHGWVPSLDDDFLSELESELGANYVLTANVFSTCASWKDANDLRVAMKLKGLKKVPGCSWVEVQN*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
