Glyma08g10190 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma08g10190

Feature Type:	gene_model
Chromosome:	Gm08
Start:	7360028
stop:	7362583
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g10190

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G30100	AT	Annotation by Michelle Graham. TAIR10: nine-cis-epoxycarotenoid dioxygenase 5 \| chr1:10571383-10573152 FORWARD LENGTH=589	SoyBase	E_val: 0	ISS
GO:0009414	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to water deprivation	SoyBase	N/A	ISS
GO:0009688	GO-bp	Annotation by Michelle Graham. GO Biological Process: abscisic acid biosynthetic process	SoyBase	N/A	ISS
GO:0010162	GO-bp	Annotation by Michelle Graham. GO Biological Process: seed dormancy process	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0009579	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: thylakoid	SoyBase	N/A	ISS
GO:0045549	GO-mf	Annotation by Michelle Graham. GO Molecular Function: 9-cis-epoxycarotenoid dioxygenase activity	SoyBase	N/A	ISS
KOG1285	KOG	Beta, beta-carotene 15,15'-dioxygenase and related enzymes	JGI		ISS
PTHR10543	Panther	CARTENOID OXYGENASE	JGI		ISS
PTHR10543:SF1	Panther	9-CIS-EPOXYCAROTENOID DIOXYGENASE-RELATED	JGI		ISS
PF03055	PFAM	Retinal pigment epithelial membrane protein	JGI		ISS
UniRef100_G0Z353	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: 9-cis-epoxycarotenoid dioxygenase 2 n=1 Tax=Glycine max RepID=G0Z353_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_G0Z353	UniRef	Annotation by Michelle Graham. Best UniRef hit: 9-cis-epoxycarotenoid dioxygenase 2 n=1 Tax=Glycine max RepID=G0Z353_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma08g10190

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g10190

Paralog	Evidence	Comments
Glyma05g27250	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g10190 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g096200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g10190

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma08g10190

Limit To All Plant Sequences

>Glyma08g10190.1   sequence type=CDS   gene model=Glyma08g10190   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATCATGGCAGCACTCAATTCAAGCACTTGTGCCAAACCTCAATTCCCTCACCCTCTCTCCTCCTCTTTCTCTTCTTCTTCATCATTAACAAGAGATTTGGGCTTCCCCACAAGGTTTCAGAAGAAGCCCATTAGAAAGGTGGTGGATTGTGCTCTACACTCCCCCCCAGTGATCCATTTCCCAAACCAGCCCTACAACAAACCTGAAATTACCAAAGAACCCACCACCTCCACCGCGGAAAGGCCTCAGTGGAACCCATTCCAAAAAGCCGCAGCAAAGGCCCTCGACATGTTCGAGAGCGCGTTGCTCTCACGCGAGCTCAACCAACCCTTTCCCAAAACCACTGACCCACGCGTCCAAATTGCCGGTAACTTCGCCCCCGTTCCGGAACACCCCGTCGAACATTCTCTCCCCGTTATTGGCACAATCCCCGACGCCATTAACGGCGTCTACCTCCGTAACGGCGCCAACCCATTGTTCAAGCCAAAAGCGGGCCACCACCTCTTCGACGGCGACGGAATGGTCCACGCCGTTAAATTCAATGACGGCACCGCCAGCTACGCGTGCCGCTTCACCGAAACGCAGCGTCTCATGCAGGAGCGCAAATTGGGAAAACCTGTGTTTCCCAAGGCAATCGGCGAACTCCACGGCCATTCCGGCATCGCGAGGTTGATGCTGTTCTACGCAAGAGGCTTGTGCGGCATCGTCGACCACCGCAGAGGCGCCGGCGCAGCCAACGCCGGCCTCGTCTTCTTCAACGGAAAACTCCTCGCCATGTCGGAGGATGATTTCCCCTACGAACTCCGAATCACCGCCTCCGGCGACCTCGAAACAATTGGCCGCTACAGCTTTCACGGCCAGCTCAATTCCTCCATGATCGCGCATCCGAAGGTCGATCCTGTCTCCGGAGAGCTTTTTACCCTAAGCTACGACGTCACGAGCAAGATCCTCAAATACTTCCATTTCTCGCCCGAGGACGAGAGGAAGTCGCCGGACATAGAAATTCCCCTTGACGCGCCGACGATGACGCACGACTTCGCGATCACGGAGAATTTCGTGGTGATCCCGGACCAGCAGGTGGTGTTCAAGCTCGGCGAAATGATCAAAGGAGGATCGCCGGTGATCTACGACGGCGAGAAGAAATCGCGGTTCGGAATACTGCCAAAGTACGCTTCCGACGCGTCGAGCATCGTGTGGGTGGACTCGCCAGACACGTTCTTCTTCCACTTCTGGAACGCGTGGGAGGAACGCGACAAAGACGAAGTGGTGGTAATAGGTTCGTGCATGACACCACCAGATTCAATATTCAATGACAGAGAAGAGAGACTGAAGAGCGTTTTAACAGAAGTAAGGCTGAACATGAGAAGCGGGAAGGCGAGGAGGAGGGTGCTGGTGGAGGAAATGAACCTGGAGGCAGGGATGGTGAACAGGAAAAGGTTGGGGAGAAAAACACGGTTCGCATATTTGTGCATAGCGGAACCGTGGCCGAAGGTGTCGGGGGTGGCGAAGGTGGACCTGGAGAGTGGGGAAGTGAAGAGGCACGAGTACGGAGAGAGAAGGTTCGGTGGAGAGCCATTCTTCTTGCCAACACGTGGAGGGAATGGGAATGAGGATGAAGGGTACGTGATGGCTTTTGTGCATGACGAGATGACGTGGCAGTCCGAGTTGCAGATTCTGAATGCACTTGATTTGAAGTTGGAGGCCACTGTCATGCTGCCTTCAAGAGTGCCCTATGGCTTCCATGGCACGTTTGTGGAGGCTCATTGA

Predicted protein sequences of Glyma08g10190

Limit To All Plant Sequences

>Glyma08g10190.1   sequence type=predicted peptide   gene model=Glyma08g10190   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MIMAALNSSTCAKPQFPHPLSSSFSSSSSLTRDLGFPTRFQKKPIRKVVDCALHSPPVIHFPNQPYNKPEITKEPTTSTAERPQWNPFQKAAAKALDMFESALLSRELNQPFPKTTDPRVQIAGNFAPVPEHPVEHSLPVIGTIPDAINGVYLRNGANPLFKPKAGHHLFDGDGMVHAVKFNDGTASYACRFTETQRLMQERKLGKPVFPKAIGELHGHSGIARLMLFYARGLCGIVDHRRGAGAANAGLVFFNGKLLAMSEDDFPYELRITASGDLETIGRYSFHGQLNSSMIAHPKVDPVSGELFTLSYDVTSKILKYFHFSPEDERKSPDIEIPLDAPTMTHDFAITENFVVIPDQQVVFKLGEMIKGGSPVIYDGEKKSRFGILPKYASDASSIVWVDSPDTFFFHFWNAWEERDKDEVVVIGSCMTPPDSIFNDREERLKSVLTEVRLNMRSGKARRRVLVEEMNLEAGMVNRKRLGRKTRFAYLCIAEPWPKVSGVAKVDLESGEVKRHEYGERRFGGEPFFLPTRGGNGNEDEGYVMAFVHDEMTWQSELQILNALDLKLEATVMLPSRVPYGFHGTFVEAH*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain