SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G14920 | AT | Annotation by Michelle Graham. TAIR10: GRAS family transcription factor family protein | chr1:5149414-5151015 FORWARD LENGTH=533 | SoyBase | E_val: 0 | ISS |
| GO:0006808 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of nitrogen utilization | SoyBase | N/A | ISS |
| GO:0009651 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to salt stress | SoyBase | N/A | ISS |
| GO:0009723 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to ethylene stimulus | SoyBase | N/A | ISS |
| GO:0009737 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to abscisic acid stimulus | SoyBase | N/A | ISS |
| GO:0009739 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to gibberellin stimulus | SoyBase | N/A | ISS |
| GO:0009740 | GO-bp | Annotation by Michelle Graham. GO Biological Process: gibberellic acid mediated signaling pathway | SoyBase | N/A | ISS |
| GO:0009845 | GO-bp | Annotation by Michelle Graham. GO Biological Process: seed germination | SoyBase | N/A | ISS |
| GO:0009863 | GO-bp | Annotation by Michelle Graham. GO Biological Process: salicylic acid mediated signaling pathway | SoyBase | N/A | ISS |
| GO:0009867 | GO-bp | Annotation by Michelle Graham. GO Biological Process: jasmonic acid mediated signaling pathway | SoyBase | N/A | ISS |
| GO:0009938 | GO-bp | Annotation by Michelle Graham. GO Biological Process: negative regulation of gibberellic acid mediated signaling pathway | SoyBase | N/A | ISS |
| GO:0010029 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of seed germination | SoyBase | N/A | ISS |
| GO:0010162 | GO-bp | Annotation by Michelle Graham. GO Biological Process: seed dormancy process | SoyBase | N/A | ISS |
| GO:0010187 | GO-bp | Annotation by Michelle Graham. GO Biological Process: negative regulation of seed germination | SoyBase | N/A | ISS |
| GO:0010218 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to far red light | SoyBase | N/A | ISS |
| GO:0010233 | GO-bp | Annotation by Michelle Graham. GO Biological Process: phloem transport | SoyBase | N/A | ISS |
| GO:0010325 | GO-bp | Annotation by Michelle Graham. GO Biological Process: raffinose family oligosaccharide biosynthetic process | SoyBase | N/A | ISS |
| GO:0042538 | GO-bp | Annotation by Michelle Graham. GO Biological Process: hyperosmotic salinity response | SoyBase | N/A | ISS |
| GO:0048444 | GO-bp | Annotation by Michelle Graham. GO Biological Process: floral organ morphogenesis | SoyBase | N/A | ISS |
| GO:2000033 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of seed dormancy process | SoyBase | N/A | ISS |
| GO:2000377 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of reactive oxygen species metabolic process | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0003700 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity | SoyBase | N/A | ISS |
| GO:0005515 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein binding | SoyBase | N/A | ISS |
| PF03514 | PFAM | GRAS family transcription factor | JGI | ISS | |
| PF12041 | PFAM | Transcriptional regulator DELLA protein N terminal | JGI | ISS | |
| UniRef100_E3NYP4 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Gibberellin insensitive-like protein n=1 Tax=Glycine max RepID=E3NYP4_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_I1KRT7 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KRT7_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma08g10140 not represented in the dataset |
Glyma08g10140 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma05g27190 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.08g095800 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma08g10140.1 sequence type=CDS gene model=Glyma08g10140 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAAGAGGGAACGCGAGCAGCTTGGTTCCATCGCAGGGACCTCAAGCTGCGGTTATTCAAGCGGAAAATCGAATCTTTGGGAGGAAGAAGGAGGCATGGACGAGCTTCTTGCGGTGGTGGGTTACAAGGTTAGGTCATCGGACATGGCGGAAGTGGCGCAGAAGCTTGAGCGTCTCGAAGAAGCCATGGGAAATGTCCAAGATGACCTCCCGGAGATTTCAAACGACGTCGTTCATTACAACCCTTCCGACATCTCCAACTGGCTCGAAACCATGCTTTCTAATTTTGACCCTCTCCCCTCCGAAGAGCCGGAAAAGGACTCCGCCTCGTCGGACTACGATCTTAAGGCTATTCCGGGGAAAGCAATTTATGGAGCTAGCGACGCGCTACCAAACCCTAAGCGCGTGAAAGCCGACGAGTCAAGGCGCGCGGTGGTGGTCGTTGACTCGCAGGAGAACGGGATCCGCCTCGTGCACAGCCTCATGGCGTGCGCGGAGGCCGTGGAGAACAACAACCTCGCCGTGGCGGAGGCGCTGGTGAAGCAGATCGGCTTCCTCGCTGTGTCGCAGGTTGGAGCTATGAGGAAAGTCGCAATCTACTTCGCCGAAGCGCTCGCGAGGCGAATCTACAGAGTCTTCCCTCTGCAACACTCTCTCTCCGATTCTCTTCAGATTCACTTCTACGAAACCTGTCCATACCTCAAGTTCGCACACTTCACCGCGAACCAGGTTATCCTCGAAGCGTTCCAAGGAAAGAACCGCGTTCACGTGATTGATTTCGGTATCAACCAGGGGATGCAGTGGCCGGCGCTGATGCAAGCCCTAGCGGTTCGCACCGGCGGTCCTCCGGTTTTCCGACTCACCGGAATCGGGCCGCCGGCGGCGGACAACTCCGACCACCTCCAGGAGGTAGGGTGGAAGCTCGCGCAGCTGGCGGAGGAGATCAACGTGCAGTTCGAGTACCGTGGCTTCGTCGCGAACAGCCTCGCCGATCTCGACGCCTCCATGCTCGATCTCCGGGAAGGCGAAGCCGTCGCTGTGAACTCTGTCTTCGAGTTTCACAAGCTCCTCGCCCGCCCCGGCGCGGTGGAGAAAGTACTCTCCGTCGTACGGCAGATTCGGCCGGAGATTGTCACCGTCGTCGAGCAAGAAGCGAACCACAACAGACTGAGTTTTGTCGACCGGTTCACGGAGTCACTGCACTATTATTCAACCCTATTCGACTCGCTGGAGGGTTCGCCTGTGAACCCTAACGATAAGGCCATGTCGGAGGTTTACTTAGGGAAGCAAATCTGCAACGTGGTGGCGTGCGAGGGAATGGACCGCGTGGAAAGGCACGAGACGCTGAACCAGTGGCGGAACCGGTTCGTTTCGACCGGATTTTCTTCGGTTCACTTGGGTTCGAACGCGTACAAGCAGGCCAGCATGTTGCTCGCGCTTTTTGCGGGTGGGGATGGGTATAGGGTGGAAGAGAACAATGGTTGTCTCATGTTGGGATGGCACACTAGGCCCTTGATTGCCACCTCCGCGTGGCAACTCGCTGCAACTCGCTGA
>Glyma08g10140.1 sequence type=predicted peptide gene model=Glyma08g10140 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MKREREQLGSIAGTSSCGYSSGKSNLWEEEGGMDELLAVVGYKVRSSDMAEVAQKLERLEEAMGNVQDDLPEISNDVVHYNPSDISNWLETMLSNFDPLPSEEPEKDSASSDYDLKAIPGKAIYGASDALPNPKRVKADESRRAVVVVDSQENGIRLVHSLMACAEAVENNNLAVAEALVKQIGFLAVSQVGAMRKVAIYFAEALARRIYRVFPLQHSLSDSLQIHFYETCPYLKFAHFTANQVILEAFQGKNRVHVIDFGINQGMQWPALMQALAVRTGGPPVFRLTGIGPPAADNSDHLQEVGWKLAQLAEEINVQFEYRGFVANSLADLDASMLDLREGEAVAVNSVFEFHKLLARPGAVEKVLSVVRQIRPEIVTVVEQEANHNRLSFVDRFTESLHYYSTLFDSLEGSPVNPNDKAMSEVYLGKQICNVVACEGMDRVERHETLNQWRNRFVSTGFSSVHLGSNAYKQASMLLALFAGGDGYRVEENNGCLMLGWHTRPLIATSAWQLAATR*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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