Glyma08g10121 - SoyBase

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Report for Sequence Feature Glyma08g10121

Feature Type:	gene_model
Chromosome:	Gm08
Start:	7271276
stop:	7275964
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g10121

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G53025	AT	Annotation by Michelle Graham. TAIR10: Ubiquitin-conjugating enzyme family protein \| chr1:19757072-19759474 REVERSE LENGTH=543	SoyBase	E_val: 3.00E-115	ISS
KOG0417	KOG	Ubiquitin-protein ligase	JGI		ISS
PTHR24067	Panther	UBIQUITIN-CONJUGATING ENZYME E2	JGI		ISS
PTHR24067:SF12	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF00179	PFAM	Ubiquitin-conjugating enzyme	JGI		ISS
UniRef100_B9RVZ2	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Ubiquitin conjugating enzyme, putative n=1 Tax=Ricinus communis RepID=B9RVZ2_RICCO	SoyBase	E_val: 2.00E-141	ISS
UniRef100_UPI0002337E24	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI0002337E24 related cluster n=1 Tax=unknown RepID=UPI0002337E24	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma08g10121

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma08g10121 not represented in the dataset	Glyma08g10121 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g10121

Paralog	Evidence	Comments
Glyma05g27145	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g10121 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g095600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g10121

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma08g10121

Limit To All Plant Sequences

>Glyma08g10121.1   sequence type=CDS   gene model=Glyma08g10121   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATCTTCACGAAACCCCTCACAATTCTGGGATGAAGAAACGAAAACCGGAGCAGGACACTTTGATCAGTGATCATGGAAATTCTGTGAGTGTTGGAGAGTCATCTGGGAGTGGTGATCTCTGCAAGAGTTCTACCTCAGGATCACTGAATTCAAACAATCATAATGGTTCCAATTCTGATATTTCATGTCAAGATGACGAGGATATGATTGATGATGATGCAGATATGATTGACGATGACGGAGATGAAGATGCTGATTATGATTTTGATTACAATGATGATGATATTTATGAAGATGACTATTCAAGTATGCAGGACCAATTAGACAATGTGGATTTGCCTCCTGGGGTGGAGGCATCACTGCCTTGGTTGAAGGACATTTCTTCTTGTGAATGCAAGCAGGCTGTTGCTTTTTCCCGTACAGAATCTAGTTCCAAGGCAAAAGTGGATGAAACTGAAGATATTGTCCTGCAAAAGTTTCGACAGTTTAAGCAATTTGATACTGTTGACTCTTTTCCCGATCATCACTATGATAAGGAGGAAACTAAAGATGCACAGAAGCCTAAAAATTGGGCCAAAAAGATCCAGGAGGAATGGAAAATTTTAGAGGAAAATCTGCCAGAGACAATCTTTGTGAGAGTTAGTGAATCAAGGATGGAGCTTCTAAGGGCTGTTATAATTGGACCTCAAGGCACCCCATACCATGATGGTCTTTTCTTTTTCGATTGCCTCTTTCCTTCTACCTACCCTGCAGGTCCACCGAAAGTTCACTACCATTCAGGTGGCCTAAGGCTAAATCCAAATTTATATAATTGTGGAAAAGTCTGCCTTAGTCTCTTGGGCACTTGGCATGGTAGTAATAGTGAAAATTGGATACCAGAAAAATCAACCATGCTACAAGTGTTGGTTTCGATACAAGCTCTAATTCTAAATGAGAAGCCTTTTTTTAATGAGCCTGGGTATACGTCAACATATCCTGGTGCTGAGGGGCAAAGAAGATCTAAGGAGTACAACGAGAGTACATTTATTTTATCCTTAAAGACAATGATGTATACTCTGCGTAAACCCCCAAAGCACTTTGAGGAGCTGGTTGCGGGACATTTCCGTACCCGAGCATTTGAAATACTGAGAGCATGTAAATCATACACAGAGGGGGCTCCGGTCGGGTCGGTTCTACATAATCTAGCTCCAAGTTGTGGCAATAGTTCTACGGCTAACGCCCAGAAAGAATTCGAGTCAGCTGTGAGTAGGATGATGAATACTATGATTGCATTTTTCACCAAGAATGGCTCCACAGACTGTGATGAGTTTCGATCTCCCGAGATTTATAGTCTGTCTGCTGTGGCTACTTCAAACTTAGAGGTTTACAAGATAGAGTCTGGTACAACAACATCAACATCAACATCATTGACCCAGGTGTGA

Predicted protein sequences of Glyma08g10121

Limit To All Plant Sequences

>Glyma08g10121.1   sequence type=predicted peptide   gene model=Glyma08g10121   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDLHETPHNSGMKKRKPEQDTLISDHGNSVSVGESSGSGDLCKSSTSGSLNSNNHNGSNSDISCQDDEDMIDDDADMIDDDGDEDADYDFDYNDDDIYEDDYSSMQDQLDNVDLPPGVEASLPWLKDISSCECKQAVAFSRTESSSKAKVDETEDIVLQKFRQFKQFDTVDSFPDHHYDKEETKDAQKPKNWAKKIQEEWKILEENLPETIFVRVSESRMELLRAVIIGPQGTPYHDGLFFFDCLFPSTYPAGPPKVHYHSGGLRLNPNLYNCGKVCLSLLGTWHGSNSENWIPEKSTMLQVLVSIQALILNEKPFFNEPGYTSTYPGAEGQRRSKEYNESTFILSLKTMMYTLRKPPKHFEELVAGHFRTRAFEILRACKSYTEGAPVGSVLHNLAPSCGNSSTANAQKEFESAVSRMMNTMIAFFTKNGSTDCDEFRSPEIYSLSAVATSNLEVYKIESGTTTSTSTSLTQV*

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