SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G44510 | AT | Annotation by Michelle Graham. TAIR10: CDK inhibitor P21 binding protein | chr2:18377411-18379030 FORWARD LENGTH=326 | SoyBase | E_val: 6.00E-105 | ISS |
| GO:0008150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biological process | SoyBase | N/A | ISS |
| GO:0005730 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleolus | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0003674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: molecular function | SoyBase | N/A | ISS |
| KOG3034 | KOG | Isoamyl acetate-hydrolyzing esterase and related enzymes | JGI | ISS | |
| PTHR13261 | Panther | CDK INHIBITOR P21 BINDING PROTEIN | JGI | ISS | |
| UniRef100_G7J512 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: BCCIP-like protein n=1 Tax=Medicago truncatula RepID=G7J512_MEDTR | SoyBase | E_val: 2.00E-160 | ISS |
| UniRef100_I1KRT2 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KRT2_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma08g10100 not represented in the dataset |
Glyma08g10100 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.08g095400 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma08g10100.2 sequence type=transcript gene model=Glyma08g10100 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high CCCTAGCACGAGACAAGAGGCGTAGCGTAGGAGATGGTGCGGAGGTTTTAACTAGAGCGCGGGCTTCCAACACTGGGAAACATCAATTTAGAGCGGGAACTCAATTAACATTTAACAGCAACATAACACAACACAACCCTGTCTCCACTTCATCATGCGTTCTCAGCTTGTGAAATCGAATATCAAAACCCCTCCAAGGCCAAAACGGCGTCGTCAACCACTCAAATCATGGCCTGTTACTTTCTCCCCCTTTGCTCGCGCTCTCGCTCTCTCTCGCATCACCTCTCTCTCTCCACCAAACCCTACCCCAACCCTCTCTGCTAAGAAACCGCAACCCTCTCATGGATCTGTCCATGCAGATTTATCCCAACCGGAACACTCCGAGTCTTCCGACGAGGACTTCGATGGAGTTGTCCAAGCAGATTTTTCATTTTTCGATCCCAAACCTAATGATTTTCACGGAGCCAAGACCTTGCTGCAAACCTACCTCGACGACCAGGAATGGGATTTGAGTGCCTTTGTAGACTTGATTTTGGCACAGACCACCGTAGGCTCTGTTGTTAAGATAGAGGACGACGAGGATGAAGGGCTCTTCGCTCTTGTTACTGCTCTTAATTTATATAGATACAGGGAGCATAAGTGTATTGCGACAGTTAAGGATTTTCTCCTCCATAAAGTGCGCCAAGAGAAGAGTGTCCATGACCAGTTGAAATTGCTGTTGGGGGAGCAAGCGCATGATGTTGGTCTCCTGGTATCGCAGCGCATGGTGAACCTTCCTCCCCAGCTTCTGCCACCTCTTTATGATGCCCTTTTTGATGAAGTGTCCTGGGCCACGGAAGATGAGCTCAAGAATGTAGAACAGAAAAGAAAACAGAGCAATGGTAGTGATGAGGCAATAATATACATAAAGCTTGAGGATGAAATTTTTCACAAGTTAAGCTCGTGGTCCTTCTGTTTTCCATTGCAAACTCAGCAGCTTGCACCTCATGAGCTGAGGAATTACAGGTCAACGGGATTAATCGTGGCTGTTGAAGCTGACAAAATTCCAACATTTCGTCAAGAATTAGCTTCTCTAATAAATGAAACCTGAAGGCATCGACAAGGCTACTGGATAATTTATTATATGATAGAATCTTAATACTTTCATGAGACATGCATTTTTACGCAGATTGAATTCTTTTTGCAAGGGTTTGAGCTGCCAAATTTTGAAATTTTGTTTTTTAATTTTCTATGATCCCTTTTGTTCTGCAATGACTATTGCCAAGACTACTTTCCCCTTCCTGATTTTGTTCGTATGCCTTTCTCTTTCTGGGTTTCTCCCTTAGCGAACCTGCATAATAGTATGTGCTGCGAGGCAAGGCATTGATTTGATTGTGAATATCACTATTCATTCAAAACAGAGAAAATTAGTTTTTTTTTATTTGTAGGAATTACTAAACTAAAGAATAGTCATACGACAAGAATTAGT
>Glyma08g10100.1 sequence type=CDS gene model=Glyma08g10100 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCGTTCTCAGCTTGTGAAATCGAATATCAAAACCCCTCCAAGGCCAAAACGGCGTCGTCAACCACTCAAATCATGGCCTGTTACTTTCTCCCCCTTTGCTCGCGCTCTCGCTCTCTCTCGCATCACCTCTCTCTCTCCACCAAACCCTACCCCAACCCTCTCTGCTAAGAAACCGCAACCCTCTCATGGATCTGTCCATGCAGATTTATCCCAACCGGAACACTCCGAGTCTTCCGACGAGGACTTCGATGGAGTTGTCCAAGCAGATTTTTCATTTTTCGATCCCAAACCTAATGATTTTCACGGAGCCAAGACCTTGCTGCAAACCTACCTCGACGACCAGGAATGGGATTTGAGTGCCTTTGTAGACTTGATTTTGGCACAGACCACCGTAGGCTCTGTTGTTAAGATAGAGGACGACGAGGATGAAGGGCTCTTCGCTCTTGTTACTGCTCTTAATTTATATAGATACAGGGAGCATAAGTGTATTGCGACAGTTAAGGATTTTCTCCTCCATAAAGTGCGCCAAGAGAAGAGTGTCCATGACCAGTTGAAATTGCTGTTGGGGGAGCAAGCGCATGATGTTGGTCTCCTGGTATCGCAGCGCATGGTGAACCTTCCTCCCCAGCTTCTGCCACCTCTTTATGATGCCCTTTTTGATGAAGTGTCCTGGGCCACGGAAGATGAGCCGACGGAGGAGCTCCAGAATTCCTTCAAGTTTAAGCATTATATAATACTTACCAAAATTTACGTGCTCAAGAATGTAGAACAGAAAAGAAAACAGAGCAATGGTAGTGATGAGGCAATAATATACATAAAGCTTGAGGATGAAATTTTTCACAAGTTAAGCTCGTGGTCCTTCTGTTTTCCATTGCAAACTCAGCAGCTTGCACCTCATGAGCTGAGGAATTACAGGTCAACGGGATTAATCGTGGCTGTTGAAGCTGACAAAATTCCAACATTTCGTCAAGAATTAGCTTCTCTAATAAATGAAACCTGA >Glyma08g10100.2 sequence type=CDS gene model=Glyma08g10100 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCGTTCTCAGCTTGTGAAATCGAATATCAAAACCCCTCCAAGGCCAAAACGGCGTCGTCAACCACTCAAATCATGGCCTGTTACTTTCTCCCCCTTTGCTCGCGCTCTCGCTCTCTCTCGCATCACCTCTCTCTCTCCACCAAACCCTACCCCAACCCTCTCTGCTAAGAAACCGCAACCCTCTCATGGATCTGTCCATGCAGATTTATCCCAACCGGAACACTCCGAGTCTTCCGACGAGGACTTCGATGGAGTTGTCCAAGCAGATTTTTCATTTTTCGATCCCAAACCTAATGATTTTCACGGAGCCAAGACCTTGCTGCAAACCTACCTCGACGACCAGGAATGGGATTTGAGTGCCTTTGTAGACTTGATTTTGGCACAGACCACCGTAGGCTCTGTTGTTAAGATAGAGGACGACGAGGATGAAGGGCTCTTCGCTCTTGTTACTGCTCTTAATTTATATAGATACAGGGAGCATAAGTGTATTGCGACAGTTAAGGATTTTCTCCTCCATAAAGTGCGCCAAGAGAAGAGTGTCCATGACCAGTTGAAATTGCTGTTGGGGGAGCAAGCGCATGATGTTGGTCTCCTGGTATCGCAGCGCATGGTGAACCTTCCTCCCCAGCTTCTGCCACCTCTTTATGATGCCCTTTTTGATGAAGTGTCCTGGGCCACGGAAGATGAGCTCAAGAATGTAGAACAGAAAAGAAAACAGAGCAATGGTAGTGATGAGGCAATAATATACATAAAGCTTGAGGATGAAATTTTTCACAAGTTAAGCTCGTGGTCCTTCTGTTTTCCATTGCAAACTCAGCAGCTTGCACCTCATGAGCTGAGGAATTACAGGTCAACGGGATTAATCGTGGCTGTTGAAGCTGACAAAATTCCAACATTTCGTCAAGAATTAGCTTCTCTAATAAATGAAACCTGA
>Glyma08g10100.1 sequence type=predicted peptide gene model=Glyma08g10100 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MRSQLVKSNIKTPPRPKRRRQPLKSWPVTFSPFARALALSRITSLSPPNPTPTLSAKKPQPSHGSVHADLSQPEHSESSDEDFDGVVQADFSFFDPKPNDFHGAKTLLQTYLDDQEWDLSAFVDLILAQTTVGSVVKIEDDEDEGLFALVTALNLYRYREHKCIATVKDFLLHKVRQEKSVHDQLKLLLGEQAHDVGLLVSQRMVNLPPQLLPPLYDALFDEVSWATEDEPTEELQNSFKFKHYIILTKIYVLKNVEQKRKQSNGSDEAIIYIKLEDEIFHKLSSWSFCFPLQTQQLAPHELRNYRSTGLIVAVEADKIPTFRQELASLINET* >Glyma08g10100.2 sequence type=predicted peptide gene model=Glyma08g10100 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MRSQLVKSNIKTPPRPKRRRQPLKSWPVTFSPFARALALSRITSLSPPNPTPTLSAKKPQPSHGSVHADLSQPEHSESSDEDFDGVVQADFSFFDPKPNDFHGAKTLLQTYLDDQEWDLSAFVDLILAQTTVGSVVKIEDDEDEGLFALVTALNLYRYREHKCIATVKDFLLHKVRQEKSVHDQLKLLLGEQAHDVGLLVSQRMVNLPPQLLPPLYDALFDEVSWATEDELKNVEQKRKQSNGSDEAIIYIKLEDEIFHKLSSWSFCFPLQTQQLAPHELRNYRSTGLIVAVEADKIPTFRQELASLINET*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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