Glyma08g10070 - SoyBase

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Report for Sequence Feature Glyma08g10070

Feature Type:	gene_model
Chromosome:	Gm08
Start:	7238164
stop:	7243364
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g10070

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G23170	AT	Annotation by Michelle Graham. TAIR10: Protein of unknown function DUF2359, transmembrane \| chr1:8212724-8215516 FORWARD LENGTH=615	SoyBase	E_val: 0	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
KOG4467	KOG	Uncharacterized conserved protein	JGI		ISS
PTHR13448	Panther	UNCHARACTERIZED	JGI		ISS
PF10151	PFAM	Uncharacterised conserved protein (DUF2359)	JGI		ISS
UniRef100_I1KRS9	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KRS9_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q9S791	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: AT1G70770 protein n=1 Tax=Arabidopsis thaliana RepID=Q9S791_ARATH	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma08g10070

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g10070

Paralog	Evidence	Comments
Glyma05g27090	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g10070 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g095200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g10070

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma08g10070

Limit To All Plant Sequences

>Glyma08g10070.2   sequence type=transcript   gene model=Glyma08g10070   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ACAACTACCACATGGCATTTCCGTAATTCCGGGGCCAGAGCGAGGTCAATTTCAGGAAGTCAACTCTTTGAAAAATCGAAAATTTCCCTTTTGGAATTTCTTCTTCCTCTCCTCCTACCATTTTCCTTTCACTTTCCATCACTTTCTCTCGTTTCCCCTTCGCAATTTCCCCTCTCGAAAGAGACACGCATCGAAGAAAATCACATCACGGCAATGGAGGAAAAGCACGCAGCAGCCATCGAATCCGCACACGCCGAATCTAACGGCGTCTCTCACGGCGCCGACCACGGCTGGCAGAAGGTGACCTACGCTAAGAAACAGAAGAAGAAGACTGTTAACGCCGCTAACGGCGGCCCCGATTCCCGCGCCAATTCCAGCAAGCTCGTTCCGAACGGCACGCTGTCCGGCAACGACGGCGTGTTCCGGTCGCTCGAACTGCAATCGGAGGACCGGCGCCGAAAAATTGTGGAGGCGAAGAAGCTGGCTGATGCCGCGTACGACGACGAAGACGCGCCGCTCAGATCGAAGCAGCGGCATCGCGACGACGACGACGAATACGACTACGATGACGAGAATGTGGACCGTTCCGCGGAGAACGGGAAGGCCGAGGAGGCGAAGAAGGTGAAGCCGAAGAAACCGAAGAAGCCTAAGGTGACGGTCGCGGAGGCCGCGGCGAAGATCGACGCCGCTGATCTGGGCGCTTTCCTCATCGAGATATCAGGATCGTTCGAGAAACAGCAGGATATATTGATGATGCGATTCGCTGATTATTTTGGACGTGCCTTTTCTGCTGTGACCGCATCTCAGTTTCCCTGGGTGAAATTGTTCAGGGAGTCAAGCGTGGCTAAGATCACCGATACGCCACTTTCTCACATATCTGATGCTGTATATAAAACATCAATCGACTGGATTAACCACCGTTCTCCTGAGGCACTTAGTACCTTTCTGATTTGGTCTTTAGATAGCATTCTTGCTGACTTGGGTAGCCAGCAAAATGTGGCCAAGGGTTCCAAAAAGGCTGTGCAACAAGTGTCCTCAAAATCTCAGGTTGCAATGTTCGTTGTTTTAGCAATGGTATTGCGTCGGAAGCCTGATGCTCTTATATCTGTATTGCCCACATTGAGGGAGAGTACAAAGTATCAAGGGCAAGATAAGCTTCCAGTGATTGTATGGATGATAGCTCAGGCTGCTGTAGGAGATCTCTCAGTAGGTTTGTATGCTTGGGCACGGAATCTCCTACCCATAGTGATTGGCAAAGGTGGTAACCCCCAATCCAGGGATTTGGTTTTGCAGCTAGTGGAAAAAATTTTGTCTACCCCCAAAGCACGACCTGTTTTAGTAAACAGTGCTGTGAGAAAAGGAGAACGATTAATTCCTCCTTCTGCGTTTGAAATTTTGGTCCGGGTTACTTTCCCTCCATCTTCAACTAGAGTAAAGGCTACTGAAAGATTTGAGGCCATATATCCCACTCTGAAAGAGGTGGCTCTTGGAGGTTCTGCTGGAAGTAAATCAATGAAACAAGTTGCACTGCAGATATTCAGTTTTGCTATCAAAGCAGCTGGAGAAAATAATCCTGAGTTATCAAAAGAAGCAGCTGGTATTTTTATTTGGTGTTTGAGTCAAAACACTGAATGCTACAAGCAATGGGAAAATGTTTATCAGGACAACATTGAAGCAAGTGCTTCAGTTCTGAAGAAGCTTTCTGATGATTGGAAGGAGCTATCAACAAAATTGTCTCCTCATGATCATCTGAGGGATACCATAAAGAACTTCAAGCAAAAGGTAGTTTTACAGGCAAAAGAGCTAGACTTTGAGTTTATTGCATCTGGGATTGCTCTCCAATCTCCCCCTGGTTGAATTGTGTTTTATTGTACTGAAGTCACAGAATGTTTGAAGCAAATAATGGATTAACTTTTTTTTGGCTGCAGAATGAGAAAGTATTGGACTCTGAGACTGATGCTGCTCGTCATGCACACTTCAAGGATGCCGATAAATATTGTAAGATAATCTTAGGAAGAGTTTCGCGAAGTCATGGGTGCACGACTTGTTTAACCTTTACAGTTCTTGCTTTGGCTGTGGGTGCTGCTGTTTCCTTGTCCCCCAATTTGGAATCTTTGGATTTTAAGAAGCTCTCGGAACTTTTCATCGTTCGGCACTGAGTAGTCTGGAGAATATTCCGCATTACCGGCAGTTGGTTGGTTCAAAACGGCGATTTTCTTTTCAGCCCATCTCATTCACAAATCACAATGGGTACAGTAAACCAATAGCCTCATAATAAAGTGCTTAATGCGGAGATTGTACACTTAGTTCAAATCCTGTTCGGATGACAGAGAATGGAGGTCAACAATGCTTTGAGGTTTACTTTAGTTTGACCATTTTATAATTTATTTGTTGTTCTTGTTTCTGTTGAGTTTTAATTTTATTTTAGTTTCTATGTCTTTACATTAACTTATGCTGGCAAAATGCCAATGAGGTAACTACAGCTGTATCCTGAAGTTAGTTTTAATCAAAGGAATTTTGGTGGTACATGGCGAATTTTTTCTCTACCTTTTGCTCTGTTATCATGGGTGGATGGTTGTGCCCTTTTCTGTTGCCTTTTCC

Coding sequences of Glyma08g10070

Limit To All Plant Sequences

>Glyma08g10070.1   sequence type=CDS   gene model=Glyma08g10070   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGGAAAAGCACGCAGCAGCCATCGAATCCGCACACGCCGAATCTAACGGCGTCTCTCACGGCGCCGACCACGGCTGGCAGAAGGTGACCTACGCTAAGAAACAGAAGAAGAAGACTGTTAACGCCGCTAACGGCGGCCCCGATTCCCGCGCCAATTCCAGCAAGCTCGTTCCGAACGGCACGCTGTCCGGCAACGACGGCGTGTTCCGGTCGCTCGAACTGCAATCGGAGGACCGGCGCCGAAAAATTGTGGAGGCGAAGAAGCTGGCTGATGCCGCGTACGACGACGAAGACGCGCCGCTCAGATCGAAGCAGCGGCATCGCGACGACGACGACGAATACGACTACGATGACGAGAATGTGGACCGTTCCGCGGAGAACGGGAAGGCCGAGGAGGCGAAGAAGGTGAAGCCGAAGAAACCGAAGAAGCCTAAGGTGACGGTCGCGGAGGCCGCGGCGAAGATCGACGCCGCTGATCTGGGCGCTTTCCTCATCGAGATATCAGGATCGTTCGAGAAACAGCAGGATATATTGATGATGCGATTCGCTGATTATTTTGGACGTGCCTTTTCTGCTGTGACCGCATCTCAGTTTCCCTGGGTGAAATTGTTCAGGGAGTCAAGCGTGGCTAAGATCACCGATACGCCACTTTCTCACATATCTGATGCTGTATATAAAACATCAATCGACTGGATTAACCACCGTTCTCCTGAGGCACTTAGTACCTTTCTGATTTGGTCTTTAGATAGCATTCTTGCTGACTTGGGTAGCCAGCAAAATGTGGCCAAGGGTTCCAAAAAGGCTGTGCAACAAGTGTCCTCAAAATCTCAGGTTGCAATGTTCGTTGTTTTAGCAATGGTATTGCGTCGGAAGCCTGATGCTCTTATATCTGTATTGCCCACATTGAGGGAGAGTACAAAGTATCAAGGGCAAGATAAGCTTCCAGTGATTGTATGGATGATAGCTCAGGCTGCTGTAGGAGATCTCTCAGTAGGTTTGTATGCTTGGGCACGGAATCTCCTACCCATAGTGATTGGCAAAGGTGGTAACCCCCAATCCAGGGATTTGGTTTTGCAGCTAGTGGAAAAAATTTTGTCTACCCCCAAAGCACGACCTGTTTTAGTAAACAGTGCTGTGAGAAAAGGAGAACGATTAATTCCTCCTTCTGCGTTTGAAATTTTGGTCCGGGTTACTTTCCCTCCATCTTCAACTAGAGTAAAGGCTACTGAAAGATTTGAGGCCATATATCCCACTCTGAAAGAGGTGGCTCTTGGAGGTTCTGCTGGAAGTAAATCAATGAAACAAGTTGCACTGCAGATATTCAGTTTTGCTATCAAAGCAGCTGGAGAAAATAATCCTGAGTTATCAAAAGAAGCAGCTGGTATTTTTATTTGGTGTTTGAGTCAAAACACTGAATGCTACAAGCAATGGGAAAATGTTTATCAGGACAACATTGAAGCAAGTGCTTCAGTTCTGAAGAAGCTTTCTGATGATTGGAAGGAGCTATCAACAAAATTGTCTCCTCATGATCATCTGAGGGATACCATAAAGAACTTCAAGCAAAAGAATGAGAAAGTATTGGACTCTGAGACTGATGCTGCTCGTCATGCACACTTCAAGGATGCCGATAAATATTGTAAGATAATCTTAGGAAGAGTTTCGCGAAGTCATGGGTGCACGACTTGTTTAACCTTTACAGTTCTTGCTTTGGCTGTGGGTGCTGCTGTTTCCTTGTCCCCCAATTTGGAATCTTTGGATTTTAAGAAGCTCTCGGAACTTTTCATCGTTCGGCACTGA

>Glyma08g10070.2   sequence type=CDS   gene model=Glyma08g10070   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGGAAAAGCACGCAGCAGCCATCGAATCCGCACACGCCGAATCTAACGGCGTCTCTCACGGCGCCGACCACGGCTGGCAGAAGGTGACCTACGCTAAGAAACAGAAGAAGAAGACTGTTAACGCCGCTAACGGCGGCCCCGATTCCCGCGCCAATTCCAGCAAGCTCGTTCCGAACGGCACGCTGTCCGGCAACGACGGCGTGTTCCGGTCGCTCGAACTGCAATCGGAGGACCGGCGCCGAAAAATTGTGGAGGCGAAGAAGCTGGCTGATGCCGCGTACGACGACGAAGACGCGCCGCTCAGATCGAAGCAGCGGCATCGCGACGACGACGACGAATACGACTACGATGACGAGAATGTGGACCGTTCCGCGGAGAACGGGAAGGCCGAGGAGGCGAAGAAGGTGAAGCCGAAGAAACCGAAGAAGCCTAAGGTGACGGTCGCGGAGGCCGCGGCGAAGATCGACGCCGCTGATCTGGGCGCTTTCCTCATCGAGATATCAGGATCGTTCGAGAAACAGCAGGATATATTGATGATGCGATTCGCTGATTATTTTGGACGTGCCTTTTCTGCTGTGACCGCATCTCAGTTTCCCTGGGTGAAATTGTTCAGGGAGTCAAGCGTGGCTAAGATCACCGATACGCCACTTTCTCACATATCTGATGCTGTATATAAAACATCAATCGACTGGATTAACCACCGTTCTCCTGAGGCACTTAGTACCTTTCTGATTTGGTCTTTAGATAGCATTCTTGCTGACTTGGGTAGCCAGCAAAATGTGGCCAAGGGTTCCAAAAAGGCTGTGCAACAAGTGTCCTCAAAATCTCAGGTTGCAATGTTCGTTGTTTTAGCAATGGTATTGCGTCGGAAGCCTGATGCTCTTATATCTGTATTGCCCACATTGAGGGAGAGTACAAAGTATCAAGGGCAAGATAAGCTTCCAGTGATTGTATGGATGATAGCTCAGGCTGCTGTAGGAGATCTCTCAGTAGGTTTGTATGCTTGGGCACGGAATCTCCTACCCATAGTGATTGGCAAAGGTGGTAACCCCCAATCCAGGGATTTGGTTTTGCAGCTAGTGGAAAAAATTTTGTCTACCCCCAAAGCACGACCTGTTTTAGTAAACAGTGCTGTGAGAAAAGGAGAACGATTAATTCCTCCTTCTGCGTTTGAAATTTTGGTCCGGGTTACTTTCCCTCCATCTTCAACTAGAGTAAAGGCTACTGAAAGATTTGAGGCCATATATCCCACTCTGAAAGAGGTGGCTCTTGGAGGTTCTGCTGGAAGTAAATCAATGAAACAAGTTGCACTGCAGATATTCAGTTTTGCTATCAAAGCAGCTGGAGAAAATAATCCTGAGTTATCAAAAGAAGCAGCTGGTATTTTTATTTGGTGTTTGAGTCAAAACACTGAATGCTACAAGCAATGGGAAAATGTTTATCAGGACAACATTGAAGCAAGTGCTTCAGTTCTGAAGAAGCTTTCTGATGATTGGAAGGAGCTATCAACAAAATTGTCTCCTCATGATCATCTGAGGGATACCATAAAGAACTTCAAGCAAAAGGTAGTTTTACAGGCAAAAGAGCTAGACTTTGAGTTTATTGCATCTGGGATTGCTCTCCAATCTCCCCCTGGTTGA

Predicted protein sequences of Glyma08g10070

Limit To All Plant Sequences

>Glyma08g10070.1   sequence type=predicted peptide   gene model=Glyma08g10070   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEEKHAAAIESAHAESNGVSHGADHGWQKVTYAKKQKKKTVNAANGGPDSRANSSKLVPNGTLSGNDGVFRSLELQSEDRRRKIVEAKKLADAAYDDEDAPLRSKQRHRDDDDEYDYDDENVDRSAENGKAEEAKKVKPKKPKKPKVTVAEAAAKIDAADLGAFLIEISGSFEKQQDILMMRFADYFGRAFSAVTASQFPWVKLFRESSVAKITDTPLSHISDAVYKTSIDWINHRSPEALSTFLIWSLDSILADLGSQQNVAKGSKKAVQQVSSKSQVAMFVVLAMVLRRKPDALISVLPTLRESTKYQGQDKLPVIVWMIAQAAVGDLSVGLYAWARNLLPIVIGKGGNPQSRDLVLQLVEKILSTPKARPVLVNSAVRKGERLIPPSAFEILVRVTFPPSSTRVKATERFEAIYPTLKEVALGGSAGSKSMKQVALQIFSFAIKAAGENNPELSKEAAGIFIWCLSQNTECYKQWENVYQDNIEASASVLKKLSDDWKELSTKLSPHDHLRDTIKNFKQKNEKVLDSETDAARHAHFKDADKYCKIILGRVSRSHGCTTCLTFTVLALAVGAAVSLSPNLESLDFKKLSELFIVRH*

>Glyma08g10070.2   sequence type=predicted peptide   gene model=Glyma08g10070   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEEKHAAAIESAHAESNGVSHGADHGWQKVTYAKKQKKKTVNAANGGPDSRANSSKLVPNGTLSGNDGVFRSLELQSEDRRRKIVEAKKLADAAYDDEDAPLRSKQRHRDDDDEYDYDDENVDRSAENGKAEEAKKVKPKKPKKPKVTVAEAAAKIDAADLGAFLIEISGSFEKQQDILMMRFADYFGRAFSAVTASQFPWVKLFRESSVAKITDTPLSHISDAVYKTSIDWINHRSPEALSTFLIWSLDSILADLGSQQNVAKGSKKAVQQVSSKSQVAMFVVLAMVLRRKPDALISVLPTLRESTKYQGQDKLPVIVWMIAQAAVGDLSVGLYAWARNLLPIVIGKGGNPQSRDLVLQLVEKILSTPKARPVLVNSAVRKGERLIPPSAFEILVRVTFPPSSTRVKATERFEAIYPTLKEVALGGSAGSKSMKQVALQIFSFAIKAAGENNPELSKEAAGIFIWCLSQNTECYKQWENVYQDNIEASASVLKKLSDDWKELSTKLSPHDHLRDTIKNFKQKVVLQAKELDFEFIASGIALQSPPG*

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