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Report for Sequence Feature Glyma08g10030

Feature Type:gene_model
Chromosome:Gm08
Start:7202393
stop:7206624
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G70740AT Annotation by Michelle Graham. TAIR10: Protein kinase superfamily protein | chr1:26673847-26675687 REVERSE LENGTH=425 SoyBaseE_val: 0ISS
GO:0006468GO-bp Annotation by Michelle Graham. GO Biological Process: protein phosphorylation SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0004672GO-mf Annotation by Michelle Graham. GO Molecular Function: protein kinase activity SoyBaseN/AISS
GO:0004674GO-mf Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine kinase activity SoyBaseN/AISS
GO:0004713GO-mf Annotation by Michelle Graham. GO Molecular Function: protein tyrosine kinase activity SoyBaseN/AISS
GO:0005524GO-mf Annotation by Michelle Graham. GO Molecular Function: ATP binding SoyBaseN/AISS
GO:0016301GO-mf Annotation by Michelle Graham. GO Molecular Function: kinase activity SoyBaseN/AISS
GO:0016772GO-mf Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring phosphorus-containing groups SoyBaseN/AISS
KOG1187 KOG Serine/threonine protein kinase JGI ISS
PTHR24420Panther FAMILY NOT NAMED JGI ISS
PTHR24420:SF787Panther JGI ISS
PF07714PFAM Protein tyrosine kinase JGI ISS
UniRef100_B9SP66UniRef Annotation by Michelle Graham. Most informative UniRef hit: Serine/threonine-protein kinase PBS1, putative n=1 Tax=Ricinus communis RepID=B9SP66_RICCO SoyBaseE_val: 0ISS
UniRef100_I1KRS6UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KRS6_SOYBN SoyBaseE_val: 0ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

ParalogEvidenceComments
Glyma05g27050 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Corresponding NameAnnotation VersionEvidenceComments
Glyma.08g094800 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma08g10030.1   sequence type=CDS   gene model=Glyma08g10030   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGACAAGGACAAGTCTAATACTCACAGCTTTCTTCACAGTATTGTTAAACACTTCAAATTCGGTTCCCCTAAAGAGCGAAACAATGAAGCTGACATACAGCAAATGGCTGCACAGGAGCAGAAGATCTTCGCCTACGAAACCTTGGCAGCTGCTACTAAGAATTTTAGTGCTATTCATAAGCTTGGTGAAGGAGGCTTTGGACCCGTCTACAAGGGGAAGCTGAATGATGGGAGAGAGATTGCTGTGAAGAAGTTATCACACACTTCGAACCAAGGGAAGAAGGAGTTCATGAATGAGGCAAAGTTGTTGGCTCGTGTGCAGCATCGGAATGTGGTGAATTTGGTGGGCTATTGTGTCCATGGCACCGAGAAACTACTTGTTTATGAGTATGTTGCTCATGAAAGCCTAGACAAACTTCTATTCAAATCACAAAAGAGAGAGCAGCTTGATTGGAAACGTAGGATTGGAATAATCACAGGCGTGGCAAAGGGGTTGCTTTATCTTCACGAAGACTCACACAATTGCATCATCCATCGCGATATCAAGGCGAGTAACATCTTGCTTGATGATAAATGGACGCCAAAGATTGCAGATTTTGGGATGGCTCGTCTTTTCCCGGAAGATCAAAGCCAGGTCCATACACGTGTGGCTGGAACCAATGGGTATATGGCTCCGGAATACGTGATGCATGGAAATCTTTCGGTGAAGGCAGATGTATTTAGCTATGGAGTTTTGGTATTGGAGTTGATCACCGGCCAACGAAACTCTTCTTTTAATTTGGACGTGGATGCGCAAAATCTGCTTGATTGGGCATACAAGATGTACAAGAAAGGGAAGAGCTTAGAAATTGTGGATTCTGCATTAGCATCTACGATAGTAGCCGAAGAAGTAGCAATGTGCGTTCAGCTGGGTCTGTTATGCACTCAAGGCGATCCTCAGCTACGTCCCACGATGAGGCGCGTGGTTGTGATGCTGTCGAGGAAGCCAGGGAACATGCAAGAACCTACGAGACCAGGAGTACCAGGTTCAAGATACAGAAGACCTCGGAGACACTCTGCATTGTCTTCCACAGTGGGTACCTCTGGTGCCTCTGATTCACACACTTCTGATTCTAGTAATAATTATAATACCACGGTTACTACTAGTGCCACGGGGACTATCTCAGCTACTGCAGAAACAGACCCAAAAGGGAAACGTCCAATTCGGGAGGGTTAG

>Glyma08g10030.1   sequence type=predicted peptide   gene model=Glyma08g10030   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDKDKSNTHSFLHSIVKHFKFGSPKERNNEADIQQMAAQEQKIFAYETLAAATKNFSAIHKLGEGGFGPVYKGKLNDGREIAVKKLSHTSNQGKKEFMNEAKLLARVQHRNVVNLVGYCVHGTEKLLVYEYVAHESLDKLLFKSQKREQLDWKRRIGIITGVAKGLLYLHEDSHNCIIHRDIKASNILLDDKWTPKIADFGMARLFPEDQSQVHTRVAGTNGYMAPEYVMHGNLSVKADVFSYGVLVLELITGQRNSSFNLDVDAQNLLDWAYKMYKKGKSLEIVDSALASTIVAEEVAMCVQLGLLCTQGDPQLRPTMRRVVVMLSRKPGNMQEPTRPGVPGSRYRRPRRHSALSSTVGTSGASDSHTSDSSNNYNTTVTTSATGTISATAETDPKGKRPIREG*







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