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Report for Sequence Feature Glyma08g10020

Feature Type:gene_model
Chromosome:Gm08
Start:7198923
stop:7201580
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G18240AT Annotation by Michelle Graham. TAIR10: Ribosomal protein S24/S35, mitochondrial | chr3:6255810-6257695 FORWARD LENGTH=419 SoyBaseE_val: 1.00E-175ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0005739GO-cc Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion SoyBaseN/AISS
GO:0005829GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytosol SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
PTHR13490Panther MITOCHONDRIAL 28S RIBOSOMAL PROTEIN S28 JGI ISS
PF10213PFAM Mitochondrial ribosomal subunit protein JGI ISS
UniRef100_I1KRS3UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1KRS3_SOYBN SoyBaseE_val: 0ISS
UniRef100_Q9LJQ6UniRef Annotation by Michelle Graham. Most informative UniRef hit: AT3G18240 protein n=1 Tax=Arabidopsis thaliana RepID=Q9LJQ6_ARATH SoyBaseE_val: 5.00E-173ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

ParalogEvidenceComments
Glyma05g27040 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Corresponding NameAnnotation VersionEvidenceComments
Glyma.08g094700 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma08g10020.4   sequence type=transcript   gene model=Glyma08g10020   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AAATAAAAATAAAAATAGAGAAGTAAACAGAAAAGGGGTTAAGCGGGAAGACTGAGTAGAAACCCTAGAGTGAGAAAGAAAGAGAGAGAGAGAGAGCGATGAGGAGAACTCTGGTGAGAAATGGCAGTCTCTACACTCGCAACCTTCTTCATCACTCCGCCCTCGCACTTGCCGCTTCATCTCGTCCTCAATTCAGACTCTTTTCCTCCAATGAAAACCCCCCACCGGTTCCCCAAATCGACGACGTGAACAACAAAGAGCTGAAAGCGCAGATCGAGACCTACTTCAAGGGCGACGAGAAGGTGCTCCCGTCGATCATGGAGGCGATTCTGAAGCGGAAGCTGTCGGGGAATCACGAGGACACCGACGACGAGCTCATGGAGGAGCTCCGCATGCGTCCCCTCGACGACGTCGACGACCGGGACTTTGAGTCCGACTTCGAGTCCATTCACGACACCGACGAGGAGATCGACGATTTGTACAACGCCAGGGACGTGGTGATGAAGAGGATGGTGAAGGATGAGTACTTCAACATGGATGATAAAAAGTGGGATGACATTGTTGAGGACGGGATCAAGCACGGGCTTCTTAGGGACACCAAGGAGTGCGAGGAGATTCTCGAGGATATGCTCAGCTGGGACAAACTCCTCCCTGATGATATAAAACAGAAGGTGGAAGTAAAATTTAATGAGCTAGGGGACATGTGTGAAAGAGGTGAACTTGAACCTGAAGAAGCTTACGAACAGTTTAAGAAGTTTGAGGATGAGATTGTGGCGAAATACTTGGACAAAATGGAAAAAGAGGAGGCCTCACAGTTTGATGATACTGTTGTGCCAGATAAGAAAAAGGACTTGGATGATCCACCGGGTGAAGGTCCAATTCTGCGGTGGCAAACTCGGGTAGTCTTTGCTCCTGGTGGTGATGCTTGGCATCCAAAAAACAGGAAAGTGAAACTGTCAGTTACCGTGAAGGAGCTAGGGCTTTCAAAATACCAATTTCGCCGTCTCAGAGAATTGGTAGGAAAACGTTATCATCCAGGGAGAGATGAGCTTACAATAACTAGTGAGAGGTTTGAACATCGAGAAGAAAACAGAAAGGACTGCTTAAGGACCCTTCTCTCTCTCATTGAGGAGGCAGGGAAAGCTAATAAACTAGTGGATGATGCTCGATCTTCATACGTAAAAGAGAGGCTTCATACCAATCCAGCTTTCATGGAGAGGCTGCATGCGAAGTCAATGAGGTTGCGAGAATCTAATCAGGTTCCTGCTTGAGGTTTTCAGATCTGATGTATGAATTTTTTGACATTCACCTGCCATAATTCTTTATTGCTCCCTGGTTTTTTGTATGAGTCTTATCATGGGTTCCGGTTGCAGAAACAACCTCCCTGCTTAGAGCGTAAGGCCTCTTACATCTGATCCTTCCTAGACCCCGCAACAGCAGGGGAGACTCATGCACCGGGCTGACCTCTTAGTCATATCTTTCGTATTTAGTGCTTGAATAATGGATAATTTTTTTTACCTCTTGACAGATATTGTATGCTAGTTGACTCAAATGTTACATTTTTGAGGAGTAACATTGATCATAGAAAAGGCTGAATGACCTCACACTGAAGCAAGGGATTTTTATAACCGCAGTTTACAATGACCAATTCTAGCGTGCTTTTCCACAAAATAGAGAGAATAGCCACCTCACTCTGTAACAAGCACAATTATGAGTAATAAGCAATCTCTATTTCTCTGCTAC

>Glyma08g10020.5   sequence type=transcript   gene model=Glyma08g10020   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AAATAAAAATAAAAATAGAGAAGTAAACAGAAAAGGGGTTAAGCGGGAAGACTGAGTAGAAACCCTAGAGTGAGAAAGAAAGAGAGAGAGAGAGAGCGATGAGGAGAACTCTGGTGAGAAATGGCAGTCTCTACACTCGCAACCTTCTTCATCACTCCGCCCTCGCACTTGCCGCTTCATCTCGTCCTCAATTCAGACTCTTTTCCTCCAATGAAAACCCCCCACCGGTTCCCCAAATCGACGACGTGAACAACAAAGAGCTGAAAGCGCAGATCGAGACCTACTTCAAGGGCGACGAGAAGGTGCTCCCGTCGATCATGGAGGCGATTCTGAAGCGGAAGCTGTCGGGGAATCACGAGGACACCGACGACGAGCTCATGGAGGAGCTCCGCATGCGTCCCCTCGACGACGTCGACGACCGGGACTTTGAGTCCGACTTCGAGTCCATTCACGACACCGACGAGGAGATCGACGATTTGTACAACGCCAGGGACGTGGTGATGAAGAGGATGGTGAAGGATGAGTACTTCAACATGGATGATAAAAAGTGGGATGACATTGTTGAGGACGGGATCAAGCACGGGCTTCTTAGGGACACCAAGGAGTGCGAGGAGATTCTCGAGGATATGCTCAGCTGGGACAAACTCCTCCCTGATGATATAAAACAGAAGGTGGAAGTAAAATTTAATGAGCTAGGGGACATGTGTGAAAGAGGTGAACTTGAACCTGAAGAAGCTTACGAACAGTTTAAGAAGTTTGAGGATGAGATTGTGGCGAAATACTTGGACAAAATGGAAAAAGAGGAGGCCTCACAGTTTGATGATACTGTTGTGCCAGATAAGAAAAAGGACTTGGATGATCCACCGGGTGAAGGTCCAATTCTGCGGTGGCAAACTCGGGTAGTCTTTGCTCCTGGTGGTGATGCTTGGCATCCAAAAAACAGGAAAGTGAAACTGTCAGTTACCGTGAAGGAGCTAGGGCTTTCAAAATACCAATTTCGCCGTCTCAGAGAATTGGTAGGAAAACGTTATCATCCAGGGAGAGATGAGCTTACAATAACTAGTGAGAGGTTTGAACATCGAGAAGAAAACAGAAAGGACTGCTTAAGGACCCTTCTCTCTCTCATTGAGGAGGCAGGGAAAGCTAATAAACTAGTGGATGATGCTCGATCTTCATACGTAAAAGAGAGGCTTCATACCAATCCAGCTTTCATGGAGAGGCTGCATGCGAAGTCAATGAGGTTGCGAGAATCTAATCAGGTTCCTGCTTGAGGTTTTCAGATCTGATAAACAACCTCCCTGCTTAGAGCGTAAGGCCTCTTACATCTGATCCTTCCTAGACCCCGCAACAGCAGGGGAGACTCATGCACCGGGCTGACCTCTTAGTCATATCTTTCGTATTTAGTGCTTGAATAATGGATAATTTTTTTTACCTCTTGACAGATATTGTATGCTAGTTGACTCAAATGTTACATTTTTGAGGAGTAACATTGATCATAGAAAAGGCTGAATGACCTCACACTGAAGCAAGGGATTTTTATAACCGCAGTTTACAATGACCAATTCTAGCGTGCTTTTCCACAAAATAGAGAGAATAGCCACCTCACTCTGTAACAAGCACAATTATGAGTAATAAGCAATCTCTATTTCTCTGCTAC

>Glyma08g10020.2   sequence type=CDS   gene model=Glyma08g10020   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGGCGATTCTGAAGCGGAAGCTGTCGGGGAATCACGAGGACACCGACGACGAGCTCATGGAGGAGCTCCGCATGCGTCCCCTCGACGACGTCGACGACCGGGACTTTGAGTCCGACTTCGAGTCCATTCACGACACCGACGAGGAGATCGACGATTTGTACAACGCCAGGGACGTGGTGATGAAGAGGATGGTGAAGGATGAGTACTTCAACATGGATGATAAAAAGTGGGATGACATTGTTGAGGACGGGATCAAGCACGGGCTTCTTAGGGACACCAAGGAGTGCGAGGAGATTCTCGAGGATATGCTCAGCTGGGACAAACTCCTCCCTGATGATATAAAACAGAAGGTGGAAGTAAAATTTAATGAGCTAGGGGACATGTGTGAAAGAGGTGAACTTGAACCTGAAGAAGCTTACGAACAGTTTAAGAAGTTTGAGGATGAGATTGTGGCGAAATACTTGGACAAAATGGAAAAAGAGGAGGCCTCACAGTTTGATGATACTGTTGTGCCAGATAAGAAAAAGGACTTGGATGATCCACCGGGTGAAGGTCCAATTCTGCGGTGGCAAACTCGGGTAGTCTTTGCTCCTGGTGGTGATGCTTGGCATCCAAAAAACAGGAAAGTGAAACTGTCAGTTACCGTGAAGGAGCTAGGGCTTTCAAAATACCAATTTCGCCGTCTCAGAGAATTGGTAGGAAAACGTTATCATCCAGGGAGAGATGAGCTTACAATAACTAGTGAGAGGTTTGAACATCGAGAAGAAAACAGAAAGGACTGCTTAAGGACCCTTCTCTCTCTCATTGAGGAGGCAGGGAAAGCTAATAAACTAGTGGATGATGCTCGATCTTCATACGTAAAAGAGAGGCTTCATACCAATCCAGCTTTCATGGAGAGGCTGCATGCGAAGTCAATGAGGTTGCGAGAATCTAATCAGGTTCCTGCTTGA

>Glyma08g10020.4   sequence type=CDS   gene model=Glyma08g10020   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGGAGAACTCTGGTGAGAAATGGCAGTCTCTACACTCGCAACCTTCTTCATCACTCCGCCCTCGCACTTGCCGCTTCATCTCGTCCTCAATTCAGACTCTTTTCCTCCAATGAAAACCCCCCACCGGTTCCCCAAATCGACGACGTGAACAACAAAGAGCTGAAAGCGCAGATCGAGACCTACTTCAAGGGCGACGAGAAGGTGCTCCCGTCGATCATGGAGGCGATTCTGAAGCGGAAGCTGTCGGGGAATCACGAGGACACCGACGACGAGCTCATGGAGGAGCTCCGCATGCGTCCCCTCGACGACGTCGACGACCGGGACTTTGAGTCCGACTTCGAGTCCATTCACGACACCGACGAGGAGATCGACGATTTGTACAACGCCAGGGACGTGGTGATGAAGAGGATGGTGAAGGATGAGTACTTCAACATGGATGATAAAAAGTGGGATGACATTGTTGAGGACGGGATCAAGCACGGGCTTCTTAGGGACACCAAGGAGTGCGAGGAGATTCTCGAGGATATGCTCAGCTGGGACAAACTCCTCCCTGATGATATAAAACAGAAGGTGGAAGTAAAATTTAATGAGCTAGGGGACATGTGTGAAAGAGGTGAACTTGAACCTGAAGAAGCTTACGAACAGTTTAAGAAGTTTGAGGATGAGATTGTGGCGAAATACTTGGACAAAATGGAAAAAGAGGAGGCCTCACAGTTTGATGATACTGTTGTGCCAGATAAGAAAAAGGACTTGGATGATCCACCGGGTGAAGGTCCAATTCTGCGGTGGCAAACTCGGGTAGTCTTTGCTCCTGGTGGTGATGCTTGGCATCCAAAAAACAGGAAAGTGAAACTGTCAGTTACCGTGAAGGAGCTAGGGCTTTCAAAATACCAATTTCGCCGTCTCAGAGAATTGGTAGGAAAACGTTATCATCCAGGGAGAGATGAGCTTACAATAACTAGTGAGAGGTTTGAACATCGAGAAGAAAACAGAAAGGACTGCTTAAGGACCCTTCTCTCTCTCATTGAGGAGGCAGGGAAAGCTAATAAACTAGTGGATGATGCTCGATCTTCATACGTAAAAGAGAGGCTTCATACCAATCCAGCTTTCATGGAGAGGCTGCATGCGAAGTCAATGAGGTTGCGAGAATCTAATCAGGTTCCTGCTTGA

>Glyma08g10020.5   sequence type=CDS   gene model=Glyma08g10020   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGGAGAACTCTGGTGAGAAATGGCAGTCTCTACACTCGCAACCTTCTTCATCACTCCGCCCTCGCACTTGCCGCTTCATCTCGTCCTCAATTCAGACTCTTTTCCTCCAATGAAAACCCCCCACCGGTTCCCCAAATCGACGACGTGAACAACAAAGAGCTGAAAGCGCAGATCGAGACCTACTTCAAGGGCGACGAGAAGGTGCTCCCGTCGATCATGGAGGCGATTCTGAAGCGGAAGCTGTCGGGGAATCACGAGGACACCGACGACGAGCTCATGGAGGAGCTCCGCATGCGTCCCCTCGACGACGTCGACGACCGGGACTTTGAGTCCGACTTCGAGTCCATTCACGACACCGACGAGGAGATCGACGATTTGTACAACGCCAGGGACGTGGTGATGAAGAGGATGGTGAAGGATGAGTACTTCAACATGGATGATAAAAAGTGGGATGACATTGTTGAGGACGGGATCAAGCACGGGCTTCTTAGGGACACCAAGGAGTGCGAGGAGATTCTCGAGGATATGCTCAGCTGGGACAAACTCCTCCCTGATGATATAAAACAGAAGGTGGAAGTAAAATTTAATGAGCTAGGGGACATGTGTGAAAGAGGTGAACTTGAACCTGAAGAAGCTTACGAACAGTTTAAGAAGTTTGAGGATGAGATTGTGGCGAAATACTTGGACAAAATGGAAAAAGAGGAGGCCTCACAGTTTGATGATACTGTTGTGCCAGATAAGAAAAAGGACTTGGATGATCCACCGGGTGAAGGTCCAATTCTGCGGTGGCAAACTCGGGTAGTCTTTGCTCCTGGTGGTGATGCTTGGCATCCAAAAAACAGGAAAGTGAAACTGTCAGTTACCGTGAAGGAGCTAGGGCTTTCAAAATACCAATTTCGCCGTCTCAGAGAATTGGTAGGAAAACGTTATCATCCAGGGAGAGATGAGCTTACAATAACTAGTGAGAGGTTTGAACATCGAGAAGAAAACAGAAAGGACTGCTTAAGGACCCTTCTCTCTCTCATTGAGGAGGCAGGGAAAGCTAATAAACTAGTGGATGATGCTCGATCTTCATACGTAAAAGAGAGGCTTCATACCAATCCAGCTTTCATGGAGAGGCTGCATGCGAAGTCAATGAGGTTGCGAGAATCTAATCAGGTTCCTGCTTGA

>Glyma08g10020.2   sequence type=predicted peptide   gene model=Glyma08g10020   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEAILKRKLSGNHEDTDDELMEELRMRPLDDVDDRDFESDFESIHDTDEEIDDLYNARDVVMKRMVKDEYFNMDDKKWDDIVEDGIKHGLLRDTKECEEILEDMLSWDKLLPDDIKQKVEVKFNELGDMCERGELEPEEAYEQFKKFEDEIVAKYLDKMEKEEASQFDDTVVPDKKKDLDDPPGEGPILRWQTRVVFAPGGDAWHPKNRKVKLSVTVKELGLSKYQFRRLRELVGKRYHPGRDELTITSERFEHREENRKDCLRTLLSLIEEAGKANKLVDDARSSYVKERLHTNPAFMERLHAKSMRLRESNQVPA*

>Glyma08g10020.4   sequence type=predicted peptide   gene model=Glyma08g10020   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MRRTLVRNGSLYTRNLLHHSALALAASSRPQFRLFSSNENPPPVPQIDDVNNKELKAQIETYFKGDEKVLPSIMEAILKRKLSGNHEDTDDELMEELRMRPLDDVDDRDFESDFESIHDTDEEIDDLYNARDVVMKRMVKDEYFNMDDKKWDDIVEDGIKHGLLRDTKECEEILEDMLSWDKLLPDDIKQKVEVKFNELGDMCERGELEPEEAYEQFKKFEDEIVAKYLDKMEKEEASQFDDTVVPDKKKDLDDPPGEGPILRWQTRVVFAPGGDAWHPKNRKVKLSVTVKELGLSKYQFRRLRELVGKRYHPGRDELTITSERFEHREENRKDCLRTLLSLIEEAGKANKLVDDARSSYVKERLHTNPAFMERLHAKSMRLRESNQVPA*

>Glyma08g10020.5   sequence type=predicted peptide   gene model=Glyma08g10020   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MRRTLVRNGSLYTRNLLHHSALALAASSRPQFRLFSSNENPPPVPQIDDVNNKELKAQIETYFKGDEKVLPSIMEAILKRKLSGNHEDTDDELMEELRMRPLDDVDDRDFESDFESIHDTDEEIDDLYNARDVVMKRMVKDEYFNMDDKKWDDIVEDGIKHGLLRDTKECEEILEDMLSWDKLLPDDIKQKVEVKFNELGDMCERGELEPEEAYEQFKKFEDEIVAKYLDKMEKEEASQFDDTVVPDKKKDLDDPPGEGPILRWQTRVVFAPGGDAWHPKNRKVKLSVTVKELGLSKYQFRRLRELVGKRYHPGRDELTITSERFEHREENRKDCLRTLLSLIEEAGKANKLVDDARSSYVKERLHTNPAFMERLHAKSMRLRESNQVPA*







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