Report for Sequence Feature Glyma08g10020
Feature Type: gene_model
Chromosome: Gm08
Start: 7198923
stop: 7201580
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma08g10020
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT3G18240 AT
Annotation by Michelle Graham. TAIR10: Ribosomal protein S24/S35, mitochondrial | chr3:6255810-6257695 FORWARD LENGTH=419
SoyBase E_val: 1.00E-175 ISS
GO:0008150 GO-bp
Annotation by Michelle Graham. GO Biological Process: biological process
SoyBase N/A ISS
GO:0005634 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleus
SoyBase N/A ISS
GO:0005739 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion
SoyBase N/A ISS
GO:0005829 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: cytosol
SoyBase N/A ISS
GO:0003674 GO-mf
Annotation by Michelle Graham. GO Molecular Function: molecular function
SoyBase N/A ISS
PTHR13490 Panther
MITOCHONDRIAL 28S RIBOSOMAL PROTEIN S28
JGI ISS
PF10213 PFAM
Mitochondrial ribosomal subunit protein
JGI ISS
UniRef100_I1KRS3 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1KRS3_SOYBN
SoyBase E_val: 0 ISS
UniRef100_Q9LJQ6 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: AT3G18240 protein n=1 Tax=Arabidopsis thaliana RepID=Q9LJQ6_ARATH
SoyBase E_val: 5.00E-173 ISS
Expression Patterns of Glyma08g10020
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma08g10020
Paralog Evidence Comments
Glyma05g27040 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma08g10020 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.08g094700 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma08g10020
Transcripts of Glyma08g10020
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma08g10020.4 sequence type=transcript gene model=Glyma08g10020 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
AAATAAAAATAAAAATAGAGAAGTAAACAGAAAAGGGGTTAAGCGGGAAGACTGAGTAGAAACCCTAGAGTGAGAAAGAAAGAGAGAGAGAGAGAGCGATGAGGAGAACTCTGGTGAGAAATGGCAGTCTCTACACTCGCAACCTTCTTCATCACTCCGCCCTCGCACTTGCCGCTTCATCTCGTCCTCAATTCAGACTCTTTTCCTCCAATGAAAACCCCCCACCGGTTCCCCAAATCGACGACGTGAACAACAAAGAGCTGAAAGCGCAGATCGAGACCTACTTCAAGGGCGACGAGAAGGTGCTCCCGTCGATCATGGAGGCGATTCTGAAGCGGAAGCTGTCGGGGAATCACGAGGACACCGACGACGAGCTCATGGAGGAGCTCCGCATGCGTCCCCTCGACGACGTCGACGACCGGGACTTTGAGTCCGACTTCGAGTCCATTCACGACACCGACGAGGAGATCGACGATTTGTACAACGCCAGGGACGTGGTGATGAAGAGGATGGTGAAGGATGAGTACTTCAACATGGATGATAAAAAGTGGGATGACATTGTTGAGGACGGGATCAAGCACGGGCTTCTTAGGGACACCAAGGAGTGCGAGGAGATTCTCGAGGATATGCTCAGCTGGGACAAACTCCTCCCTGATGATATAAAACAGAAGGTGGAAGTAAAATTTAATGAGCTAGGGGACATGTGTGAAAGAGGTGAACTTGAACCTGAAGAAGCTTACGAACAGTTTAAGAAGTTTGAGGATGAGATTGTGGCGAAATACTTGGACAAAATGGAAAAAGAGGAGGCCTCACAGTTTGATGATACTGTTGTGCCAGATAAGAAAAAGGACTTGGATGATCCACCGGGTGAAGGTCCAATTCTGCGGTGGCAAACTCGGGTAGTCTTTGCTCCTGGTGGTGATGCTTGGCATCCAAAAAACAGGAAAGTGAAACTGTCAGTTACCGTGAAGGAGCTAGGGCTTTCAAAATACCAATTTCGCCGTCTCAGAGAATTGGTAGGAAAACGTTATCATCCAGGGAGAGATGAGCTTACAATAACTAGTGAGAGGTTTGAACATCGAGAAGAAAACAGAAAGGACTGCTTAAGGACCCTTCTCTCTCTCATTGAGGAGGCAGGGAAAGCTAATAAACTAGTGGATGATGCTCGATCTTCATACGTAAAAGAGAGGCTTCATACCAATCCAGCTTTCATGGAGAGGCTGCATGCGAAGTCAATGAGGTTGCGAGAATCTAATCAGGTTCCTGCTTGAGGTTTTCAGATCTGATGTATGAATTTTTTGACATTCACCTGCCATAATTCTTTATTGCTCCCTGGTTTTTTGTATGAGTCTTATCATGGGTTCCGGTTGCAGAAACAACCTCCCTGCTTAGAGCGTAAGGCCTCTTACATCTGATCCTTCCTAGACCCCGCAACAGCAGGGGAGACTCATGCACCGGGCTGACCTCTTAGTCATATCTTTCGTATTTAGTGCTTGAATAATGGATAATTTTTTTTACCTCTTGACAGATATTGTATGCTAGTTGACTCAAATGTTACATTTTTGAGGAGTAACATTGATCATAGAAAAGGCTGAATGACCTCACACTGAAGCAAGGGATTTTTATAACCGCAGTTTACAATGACCAATTCTAGCGTGCTTTTCCACAAAATAGAGAGAATAGCCACCTCACTCTGTAACAAGCACAATTATGAGTAATAAGCAATCTCTATTTCTCTGCTAC
>Glyma08g10020.5 sequence type=transcript gene model=Glyma08g10020 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
AAATAAAAATAAAAATAGAGAAGTAAACAGAAAAGGGGTTAAGCGGGAAGACTGAGTAGAAACCCTAGAGTGAGAAAGAAAGAGAGAGAGAGAGAGCGATGAGGAGAACTCTGGTGAGAAATGGCAGTCTCTACACTCGCAACCTTCTTCATCACTCCGCCCTCGCACTTGCCGCTTCATCTCGTCCTCAATTCAGACTCTTTTCCTCCAATGAAAACCCCCCACCGGTTCCCCAAATCGACGACGTGAACAACAAAGAGCTGAAAGCGCAGATCGAGACCTACTTCAAGGGCGACGAGAAGGTGCTCCCGTCGATCATGGAGGCGATTCTGAAGCGGAAGCTGTCGGGGAATCACGAGGACACCGACGACGAGCTCATGGAGGAGCTCCGCATGCGTCCCCTCGACGACGTCGACGACCGGGACTTTGAGTCCGACTTCGAGTCCATTCACGACACCGACGAGGAGATCGACGATTTGTACAACGCCAGGGACGTGGTGATGAAGAGGATGGTGAAGGATGAGTACTTCAACATGGATGATAAAAAGTGGGATGACATTGTTGAGGACGGGATCAAGCACGGGCTTCTTAGGGACACCAAGGAGTGCGAGGAGATTCTCGAGGATATGCTCAGCTGGGACAAACTCCTCCCTGATGATATAAAACAGAAGGTGGAAGTAAAATTTAATGAGCTAGGGGACATGTGTGAAAGAGGTGAACTTGAACCTGAAGAAGCTTACGAACAGTTTAAGAAGTTTGAGGATGAGATTGTGGCGAAATACTTGGACAAAATGGAAAAAGAGGAGGCCTCACAGTTTGATGATACTGTTGTGCCAGATAAGAAAAAGGACTTGGATGATCCACCGGGTGAAGGTCCAATTCTGCGGTGGCAAACTCGGGTAGTCTTTGCTCCTGGTGGTGATGCTTGGCATCCAAAAAACAGGAAAGTGAAACTGTCAGTTACCGTGAAGGAGCTAGGGCTTTCAAAATACCAATTTCGCCGTCTCAGAGAATTGGTAGGAAAACGTTATCATCCAGGGAGAGATGAGCTTACAATAACTAGTGAGAGGTTTGAACATCGAGAAGAAAACAGAAAGGACTGCTTAAGGACCCTTCTCTCTCTCATTGAGGAGGCAGGGAAAGCTAATAAACTAGTGGATGATGCTCGATCTTCATACGTAAAAGAGAGGCTTCATACCAATCCAGCTTTCATGGAGAGGCTGCATGCGAAGTCAATGAGGTTGCGAGAATCTAATCAGGTTCCTGCTTGAGGTTTTCAGATCTGATAAACAACCTCCCTGCTTAGAGCGTAAGGCCTCTTACATCTGATCCTTCCTAGACCCCGCAACAGCAGGGGAGACTCATGCACCGGGCTGACCTCTTAGTCATATCTTTCGTATTTAGTGCTTGAATAATGGATAATTTTTTTTACCTCTTGACAGATATTGTATGCTAGTTGACTCAAATGTTACATTTTTGAGGAGTAACATTGATCATAGAAAAGGCTGAATGACCTCACACTGAAGCAAGGGATTTTTATAACCGCAGTTTACAATGACCAATTCTAGCGTGCTTTTCCACAAAATAGAGAGAATAGCCACCTCACTCTGTAACAAGCACAATTATGAGTAATAAGCAATCTCTATTTCTCTGCTAC
Coding sequences of Glyma08g10020
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma08g10020.2 sequence type=CDS gene model=Glyma08g10020 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGAGGCGATTCTGAAGCGGAAGCTGTCGGGGAATCACGAGGACACCGACGACGAGCTCATGGAGGAGCTCCGCATGCGTCCCCTCGACGACGTCGACGACCGGGACTTTGAGTCCGACTTCGAGTCCATTCACGACACCGACGAGGAGATCGACGATTTGTACAACGCCAGGGACGTGGTGATGAAGAGGATGGTGAAGGATGAGTACTTCAACATGGATGATAAAAAGTGGGATGACATTGTTGAGGACGGGATCAAGCACGGGCTTCTTAGGGACACCAAGGAGTGCGAGGAGATTCTCGAGGATATGCTCAGCTGGGACAAACTCCTCCCTGATGATATAAAACAGAAGGTGGAAGTAAAATTTAATGAGCTAGGGGACATGTGTGAAAGAGGTGAACTTGAACCTGAAGAAGCTTACGAACAGTTTAAGAAGTTTGAGGATGAGATTGTGGCGAAATACTTGGACAAAATGGAAAAAGAGGAGGCCTCACAGTTTGATGATACTGTTGTGCCAGATAAGAAAAAGGACTTGGATGATCCACCGGGTGAAGGTCCAATTCTGCGGTGGCAAACTCGGGTAGTCTTTGCTCCTGGTGGTGATGCTTGGCATCCAAAAAACAGGAAAGTGAAACTGTCAGTTACCGTGAAGGAGCTAGGGCTTTCAAAATACCAATTTCGCCGTCTCAGAGAATTGGTAGGAAAACGTTATCATCCAGGGAGAGATGAGCTTACAATAACTAGTGAGAGGTTTGAACATCGAGAAGAAAACAGAAAGGACTGCTTAAGGACCCTTCTCTCTCTCATTGAGGAGGCAGGGAAAGCTAATAAACTAGTGGATGATGCTCGATCTTCATACGTAAAAGAGAGGCTTCATACCAATCCAGCTTTCATGGAGAGGCTGCATGCGAAGTCAATGAGGTTGCGAGAATCTAATCAGGTTCCTGCTTGA
>Glyma08g10020.4 sequence type=CDS gene model=Glyma08g10020 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGAGGAGAACTCTGGTGAGAAATGGCAGTCTCTACACTCGCAACCTTCTTCATCACTCCGCCCTCGCACTTGCCGCTTCATCTCGTCCTCAATTCAGACTCTTTTCCTCCAATGAAAACCCCCCACCGGTTCCCCAAATCGACGACGTGAACAACAAAGAGCTGAAAGCGCAGATCGAGACCTACTTCAAGGGCGACGAGAAGGTGCTCCCGTCGATCATGGAGGCGATTCTGAAGCGGAAGCTGTCGGGGAATCACGAGGACACCGACGACGAGCTCATGGAGGAGCTCCGCATGCGTCCCCTCGACGACGTCGACGACCGGGACTTTGAGTCCGACTTCGAGTCCATTCACGACACCGACGAGGAGATCGACGATTTGTACAACGCCAGGGACGTGGTGATGAAGAGGATGGTGAAGGATGAGTACTTCAACATGGATGATAAAAAGTGGGATGACATTGTTGAGGACGGGATCAAGCACGGGCTTCTTAGGGACACCAAGGAGTGCGAGGAGATTCTCGAGGATATGCTCAGCTGGGACAAACTCCTCCCTGATGATATAAAACAGAAGGTGGAAGTAAAATTTAATGAGCTAGGGGACATGTGTGAAAGAGGTGAACTTGAACCTGAAGAAGCTTACGAACAGTTTAAGAAGTTTGAGGATGAGATTGTGGCGAAATACTTGGACAAAATGGAAAAAGAGGAGGCCTCACAGTTTGATGATACTGTTGTGCCAGATAAGAAAAAGGACTTGGATGATCCACCGGGTGAAGGTCCAATTCTGCGGTGGCAAACTCGGGTAGTCTTTGCTCCTGGTGGTGATGCTTGGCATCCAAAAAACAGGAAAGTGAAACTGTCAGTTACCGTGAAGGAGCTAGGGCTTTCAAAATACCAATTTCGCCGTCTCAGAGAATTGGTAGGAAAACGTTATCATCCAGGGAGAGATGAGCTTACAATAACTAGTGAGAGGTTTGAACATCGAGAAGAAAACAGAAAGGACTGCTTAAGGACCCTTCTCTCTCTCATTGAGGAGGCAGGGAAAGCTAATAAACTAGTGGATGATGCTCGATCTTCATACGTAAAAGAGAGGCTTCATACCAATCCAGCTTTCATGGAGAGGCTGCATGCGAAGTCAATGAGGTTGCGAGAATCTAATCAGGTTCCTGCTTGA
>Glyma08g10020.5 sequence type=CDS gene model=Glyma08g10020 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGAGGAGAACTCTGGTGAGAAATGGCAGTCTCTACACTCGCAACCTTCTTCATCACTCCGCCCTCGCACTTGCCGCTTCATCTCGTCCTCAATTCAGACTCTTTTCCTCCAATGAAAACCCCCCACCGGTTCCCCAAATCGACGACGTGAACAACAAAGAGCTGAAAGCGCAGATCGAGACCTACTTCAAGGGCGACGAGAAGGTGCTCCCGTCGATCATGGAGGCGATTCTGAAGCGGAAGCTGTCGGGGAATCACGAGGACACCGACGACGAGCTCATGGAGGAGCTCCGCATGCGTCCCCTCGACGACGTCGACGACCGGGACTTTGAGTCCGACTTCGAGTCCATTCACGACACCGACGAGGAGATCGACGATTTGTACAACGCCAGGGACGTGGTGATGAAGAGGATGGTGAAGGATGAGTACTTCAACATGGATGATAAAAAGTGGGATGACATTGTTGAGGACGGGATCAAGCACGGGCTTCTTAGGGACACCAAGGAGTGCGAGGAGATTCTCGAGGATATGCTCAGCTGGGACAAACTCCTCCCTGATGATATAAAACAGAAGGTGGAAGTAAAATTTAATGAGCTAGGGGACATGTGTGAAAGAGGTGAACTTGAACCTGAAGAAGCTTACGAACAGTTTAAGAAGTTTGAGGATGAGATTGTGGCGAAATACTTGGACAAAATGGAAAAAGAGGAGGCCTCACAGTTTGATGATACTGTTGTGCCAGATAAGAAAAAGGACTTGGATGATCCACCGGGTGAAGGTCCAATTCTGCGGTGGCAAACTCGGGTAGTCTTTGCTCCTGGTGGTGATGCTTGGCATCCAAAAAACAGGAAAGTGAAACTGTCAGTTACCGTGAAGGAGCTAGGGCTTTCAAAATACCAATTTCGCCGTCTCAGAGAATTGGTAGGAAAACGTTATCATCCAGGGAGAGATGAGCTTACAATAACTAGTGAGAGGTTTGAACATCGAGAAGAAAACAGAAAGGACTGCTTAAGGACCCTTCTCTCTCTCATTGAGGAGGCAGGGAAAGCTAATAAACTAGTGGATGATGCTCGATCTTCATACGTAAAAGAGAGGCTTCATACCAATCCAGCTTTCATGGAGAGGCTGCATGCGAAGTCAATGAGGTTGCGAGAATCTAATCAGGTTCCTGCTTGA
Predicted protein sequences of Glyma08g10020
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma08g10020.2 sequence type=predicted peptide gene model=Glyma08g10020 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MEAILKRKLSGNHEDTDDELMEELRMRPLDDVDDRDFESDFESIHDTDEEIDDLYNARDVVMKRMVKDEYFNMDDKKWDDIVEDGIKHGLLRDTKECEEILEDMLSWDKLLPDDIKQKVEVKFNELGDMCERGELEPEEAYEQFKKFEDEIVAKYLDKMEKEEASQFDDTVVPDKKKDLDDPPGEGPILRWQTRVVFAPGGDAWHPKNRKVKLSVTVKELGLSKYQFRRLRELVGKRYHPGRDELTITSERFEHREENRKDCLRTLLSLIEEAGKANKLVDDARSSYVKERLHTNPAFMERLHAKSMRLRESNQVPA*
>Glyma08g10020.4 sequence type=predicted peptide gene model=Glyma08g10020 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MRRTLVRNGSLYTRNLLHHSALALAASSRPQFRLFSSNENPPPVPQIDDVNNKELKAQIETYFKGDEKVLPSIMEAILKRKLSGNHEDTDDELMEELRMRPLDDVDDRDFESDFESIHDTDEEIDDLYNARDVVMKRMVKDEYFNMDDKKWDDIVEDGIKHGLLRDTKECEEILEDMLSWDKLLPDDIKQKVEVKFNELGDMCERGELEPEEAYEQFKKFEDEIVAKYLDKMEKEEASQFDDTVVPDKKKDLDDPPGEGPILRWQTRVVFAPGGDAWHPKNRKVKLSVTVKELGLSKYQFRRLRELVGKRYHPGRDELTITSERFEHREENRKDCLRTLLSLIEEAGKANKLVDDARSSYVKERLHTNPAFMERLHAKSMRLRESNQVPA*
>Glyma08g10020.5 sequence type=predicted peptide gene model=Glyma08g10020 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MRRTLVRNGSLYTRNLLHHSALALAASSRPQFRLFSSNENPPPVPQIDDVNNKELKAQIETYFKGDEKVLPSIMEAILKRKLSGNHEDTDDELMEELRMRPLDDVDDRDFESDFESIHDTDEEIDDLYNARDVVMKRMVKDEYFNMDDKKWDDIVEDGIKHGLLRDTKECEEILEDMLSWDKLLPDDIKQKVEVKFNELGDMCERGELEPEEAYEQFKKFEDEIVAKYLDKMEKEEASQFDDTVVPDKKKDLDDPPGEGPILRWQTRVVFAPGGDAWHPKNRKVKLSVTVKELGLSKYQFRRLRELVGKRYHPGRDELTITSERFEHREENRKDCLRTLLSLIEEAGKANKLVDDARSSYVKERLHTNPAFMERLHAKSMRLRESNQVPA*