Glyma08g10010 - SoyBase

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Report for Sequence Feature Glyma08g10010

Feature Type:	gene_model
Chromosome:	Gm08
Start:	7188303
stop:	7192093
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g10010

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G18270	AT	Annotation by Michelle Graham. TAIR10: cytochrome P450, family 77, subfamily A, polypeptide 5 pseudogene \| chr3:6262010-6264025 FORWARD LENGTH=410	SoyBase	E_val: 0	ISS
GO:0008152	GO-bp	Annotation by Michelle Graham. GO Biological Process: metabolic process	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0003824	GO-mf	Annotation by Michelle Graham. GO Molecular Function: catalytic activity	SoyBase	N/A	ISS
PTHR13794	Panther	ENOLASE SUPERFAMILY, MANDELATE RACEMASE	JGI		ISS
PTHR13794:SF13	Panther	MANDELATE RACEMASE	JGI		ISS
PF01188	PFAM	Mandelate racemase / muconate lactonizing enzyme, C-terminal domain	JGI		ISS
PF02746	PFAM	Mandelate racemase / muconate lactonizing enzyme, N-terminal domain	JGI		ISS
UniRef100_B9SFX6	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Muconate cycloisomerase, putative n=1 Tax=Ricinus communis RepID=B9SFX6_RICCO	SoyBase	E_val: 0	ISS
UniRef100_I1KRS2	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KRS2_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma08g10010

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g10010

Paralog	Evidence	Comments
Glyma05g27030	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g10010 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g094600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g10010

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma08g10010

Limit To All Plant Sequences

>Glyma08g10010.1   sequence type=CDS   gene model=Glyma08g10010   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCTGCCACTCCTAGGATCCAACATGGCTCAAACACTAAACTGCAGAACACTACAACCAATGGACTCAACTATGATCAAGTCACTGTCCCACAATCCAAAAAACGCCAATTCCACCGCATTCACAAGGCACTTTGCCAAAAAATCTGGTGTTTTTATCAAGATCATGGCTTCTGCTACACCCACAGCAGCTCCTATCACCTTTGGATTCAAGAATTTGTTGGAAACATTCACTGTTGATGTGCATAGAGCAGAGAACAGGCCACTGAATGTGCCCTTAATAGCCCCTTTTACCATTGCTACCTCTAGATTGGCCAAGGTGGAGAACGTGGCCATAAGGGTTGAGTTGAGCAATGGTTCTGTGGGGTGGGGCGAGGCACCAATTTTGCCTTTTGTTACTGCAGAGGACCAGACCACTGCCATGGCCAAGGCTTCTGAGGCATGTGCCTTCTTGAGGAGATGTCCTGCACTCACTTTGGGTTCCATGTTGGGGGAGATTGCTGGTATTCTTCCAGGGCATCAATTTGCTTCAGTTAGGGCTGGGATGGAGATGGCAATAATTGATGCTGTTGCAAATAGTATTCGTGTGCCATTGTGGAGGCTTTTTGGTGGGGCTTCAAATACCATAACCACTGATATTACAATCCCAATTGTTTCTCCAGCTGAAGCAGCTGAATTGGCTTCTAAGTACTATAAAGAAGGATTTAAGACTTTAAAGCTGAAAGTGGGCAAGAATCTGAATGCAGATATAGAAGTGCTTCAAGCTATACGTGTTGCACACCCTGAGTGTCAGTTTATTCTTGATGCTAATGAGGGGTATAACTCTGAGGAAGCAGTTGAAGTTCTTGAGAAACTACATGATATGAGGTTGACTCCTGTTCTATTTGAGCAACCAGTTCATAGAGATGATTGGGATGGTCTTCGGTATGTCGGTAATATAGCAAGAGAGAGATATGGAGTATCTGTTGCAGCTGATGAGAGTTGCAGAAGCATAGTTGATGTTTACAAAATTGTGGAAGGGAATGTTTTAGATGTCATTAACATAAAGCTTGCCAAAGTTGGGGTTATGGGTGCCCTTGAAATTATTGAGAAGGCAAAAGCAGCAGGTTTAGATTTGATGATTGGTGGTATGGTTGAGACTAGACTTGCTATGGGTTTTGCTGGCCAACTTGCTGCTGGCCTTGGCTGTTTTAAGTTCATTGACTTAGACACACCACTTCTGTTGTCAGATGATCCAGTTCTTGAAGGCTATGAAGTTTCTGGTGCCACTTATAAGTTCACAAACGCTAGGGGACATGGTGGATTCCTTCACTGGGACAACCTTGCTTAA

Predicted protein sequences of Glyma08g10010

Limit To All Plant Sequences

>Glyma08g10010.1   sequence type=predicted peptide   gene model=Glyma08g10010   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLPLLGSNMAQTLNCRTLQPMDSTMIKSLSHNPKNANSTAFTRHFAKKSGVFIKIMASATPTAAPITFGFKNLLETFTVDVHRAENRPLNVPLIAPFTIATSRLAKVENVAIRVELSNGSVGWGEAPILPFVTAEDQTTAMAKASEACAFLRRCPALTLGSMLGEIAGILPGHQFASVRAGMEMAIIDAVANSIRVPLWRLFGGASNTITTDITIPIVSPAEAAELASKYYKEGFKTLKLKVGKNLNADIEVLQAIRVAHPECQFILDANEGYNSEEAVEVLEKLHDMRLTPVLFEQPVHRDDWDGLRYVGNIARERYGVSVAADESCRSIVDVYKIVEGNVLDVINIKLAKVGVMGALEIIEKAKAAGLDLMIGGMVETRLAMGFAGQLAAGLGCFKFIDLDTPLLLSDDPVLEGYEVSGATYKFTNARGHGGFLHWDNLA*

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