SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G16100 | AT | Annotation by Michelle Graham. TAIR10: Protein of unknown function (DUF789) | chr4:9105809-9107986 FORWARD LENGTH=394 | SoyBase | E_val: 5.00E-42 | ISS |
| GO:0008150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biological process | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0003674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: molecular function | SoyBase | N/A | ISS |
| PF05623 | PFAM | Protein of unknown function (DUF789) | JGI | ISS | |
| UniRef100_Q10B37 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Expressed protein n=2 Tax=Oryza sativa Japonica Group RepID=Q10B37_ORYSJ | SoyBase | E_val: 3.00E-39 | ISS |
| UniRef100_UPI00023389B0 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI00023389B0 related cluster n=1 Tax=unknown RepID=UPI00023389B0 | SoyBase | E_val: 0 | ISS |
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Glyma08g10001 not represented in the dataset |
Glyma08g10001 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma05g27020 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma08g10001.1 sequence type=CDS gene model=Glyma08g10001 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCTGGGAACTGCACTGCAATTCAGCGGCGTTCGCGGCGAGGATCGGTTTTACATTCCGGTGAAGGCGAGGAAGAACCAGAATCAGCGGAAACAGAGTCACAGAGCCAAGAACAACGAACCTGAAAACGCGGATTTAGCTTCGAAGAACAAAGTCGATGTCTCTGAAAATAGCAATAACAATAGCAACATCAAAAGCAAGAGCGATAGTAATCTCAACCAATCTCTGAAACCAACTCTTTCTCCGTCCGTAGAGGCTGTCAGTAATATCGATAGGTTCTTGGAGTTTACAACACCGTCAGTTCCTGCTCAGTATTTCTCCAAGACAACGATGAGAGGATGGAAGTTTTGCGATGTGGAGTATCAGTCTTACTTTACATTGAGTGATCTGTGGGAGTCTTTTAAGGAGTGGAGTGCGTATGGAGCTGGAGTGCCTTTGGTGCTTGACCAAAGTGATTCTGTTGTTCAGTATTATGTTCCCTATTTGTCAGCTATTCAACTCTATGCTCACTCTGCTGAGAAGTCAAGTGCAAAGCCAAGGTACACCAGTGAAGACAGTGAGGGTGATTACTACAGAGATTCATGTAGTGAAGGAAGTAGTGATTATGAATATGGAAAAAGGACTGAATTTATGACACAAAGAAGTAGTCAGCATCTAACAGGTGGTGTCTCACTGAAAATGGACACACTATCTATGCATGATAAATGCAGTACAGTGCAAGAAGGATTTTCAAGTGATGATAGTGAAACTGGGAATCCTCAAGATCTACTATTCGAGTATTTTGAACAAGATCCTCCTTATAGTCGTGAACCATTGGCTGACAAGGAAATTACTGATCCTTAG
>Glyma08g10001.1 sequence type=predicted peptide gene model=Glyma08g10001 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MLGTALQFSGVRGEDRFYIPVKARKNQNQRKQSHRAKNNEPENADLASKNKVDVSENSNNNSNIKSKSDSNLNQSLKPTLSPSVEAVSNIDRFLEFTTPSVPAQYFSKTTMRGWKFCDVEYQSYFTLSDLWESFKEWSAYGAGVPLVLDQSDSVVQYYVPYLSAIQLYAHSAEKSSAKPRYTSEDSEGDYYRDSCSEGSSDYEYGKRTEFMTQRSSQHLTGGVSLKMDTLSMHDKCSTVQEGFSSDDSETGNPQDLLFEYFEQDPPYSREPLADKEITDP*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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