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Report for Sequence Feature Glyma08g09970

Feature Type:gene_model
Chromosome:Gm08
Start:7150791
stop:7156351
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma08g09970
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G66140AT Annotation by Michelle Graham. TAIR10: zinc finger protein 4 | chr1:24620063-24620845 REVERSE LENGTH=260 SoyBaseE_val: 2.00E-38ISS
GO:0006355GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent SoyBaseN/AISS
GO:0005622GO-cc Annotation by Michelle Graham. GO Cellular Compartment: intracellular SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0003676GO-mf Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding SoyBaseN/AISS
GO:0003700GO-mf Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity SoyBaseN/AISS
GO:0008270GO-mf Annotation by Michelle Graham. GO Molecular Function: zinc ion binding SoyBaseN/AISS
PTHR10042Panther EARLY GROWTH RESPONSE PROTEIN JGI ISS
PTHR10042:SF14Panther ZFP4 (ZINC FINGER PROTEIN 4), NUCLEIC ACID BINDING JGI ISS
UniRef100_B9SNH3UniRef Annotation by Michelle Graham. Most informative UniRef hit: Zinc finger protein, putative n=1 Tax=Ricinus communis RepID=B9SNH3_RICCO SoyBaseE_val: 2.00E-83ISS
UniRef100_C6TK52UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6TK52_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma08g09970
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g09970
ParalogEvidenceComments
Glyma05g26990 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g09970 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.08g094200 Wm82.a2.v1IGC As supplied by JGI

References for Glyma08g09970
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma08g09970
>Glyma08g09970.1   sequence type=CDS   gene model=Glyma08g09970   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATGACTCCAAACTTGAACTTGGAAATCGAAAATCATTCAGAAGGCAGCAGCCAAGTGGCTTCAAATGTATCCTTGCATGAAGCATCTCATGATCTTACAAAGGGCAGCACCACCACTTCCTCCTGTCTCACAAAGGATGAAACTGATCCAGGTTTCATTACCCTTGACTTGACACTCAACTTCAATAATTCCGGTGATGGCGAGTTGAAAGTCTCGAGTGATGCTAGCAGTGAAGTTGGAGCTGAAGCTCCTGCTTCAGCATCAGCAACTCCAAGGGTTTTCTCTTGTAACTACTGCAGGAGGAAGTTCTATAGCTCTCAGGCATTAGGGGGTCATCAAAATGCACACAAAAGGGAGAGGACGATGGCTAAGCGCGCAATGCGAATGGGGATGTTCACTGAGAGGTTTACAAGCTTGGCATCTCTACCTCTTCATGGTTCACCTTTCAGGTCTCTTGGCCTTGAAGCTCATTCTGCAATGCACCGAAGACACGTGCCATCCTCCGTGACAGCACTGAGGGCTCCTGATATGAGAGCTGCTGCAAAATTTGAGAGAAACCAATTTGGATCACTGGTTTTCATGGAAGATGATGATGTTGGATTCTTTTGGCCTGGCAGTTTCAGACAGGTAGACCAACAAGGAGCTGGTGATGTTAATGTAGGACATGCTCAAAGTTCAAATGCTAGTTTAGCTCCAATGGTGCCTCCTCCACCACAAGCTTCTGCATCTCCTGATCTCACATTGAAGCTTTAA
Predicted protein sequences of Glyma08g09970
>Glyma08g09970.1   sequence type=predicted peptide   gene model=Glyma08g09970   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MMTPNLNLEIENHSEGSSQVASNVSLHEASHDLTKGSTTTSSCLTKDETDPGFITLDLTLNFNNSGDGELKVSSDASSEVGAEAPASASATPRVFSCNYCRRKFYSSQALGGHQNAHKRERTMAKRAMRMGMFTERFTSLASLPLHGSPFRSLGLEAHSAMHRRHVPSSVTALRAPDMRAAAKFERNQFGSLVFMEDDDVGFFWPGSFRQVDQQGAGDVNVGHAQSSNASLAPMVPPPPQASASPDLTLKL*






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