Report for Sequence Feature Glyma08g09960
Feature Type: gene_model
Chromosome: Gm08
Start: 7138129
stop: 7142718
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma08g09960
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT1G14740 AT
Annotation by Michelle Graham. TAIR10: Protein of unknown function (DUF1423) | chr1:5075450-5077732 REVERSE LENGTH=733
SoyBase E_val: 0 ISS
GO:0001708 GO-bp
Annotation by Michelle Graham. GO Biological Process: cell fate specification
SoyBase N/A ISS
GO:0009880 GO-bp
Annotation by Michelle Graham. GO Biological Process: embryonic pattern specification
SoyBase N/A ISS
GO:0090421 GO-bp
Annotation by Michelle Graham. GO Biological Process: embryonic meristem initiation
SoyBase N/A ISS
GO:0005634 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleus
SoyBase N/A ISS
GO:0005515 GO-mf
Annotation by Michelle Graham. GO Molecular Function: protein binding
SoyBase N/A ISS
PTHR21736 Panther
VERNALIZATION-INSENSITIVE PROTEIN 3
JGI ISS
PTHR21736:SF15 Panther
SUBFAMILY NOT NAMED
JGI ISS
PF07227 PFAM
Protein of unknown function (DUF1423)
JGI ISS
UniRef100_G8A355 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Class I heat shock protein n=1 Tax=Medicago truncatula RepID=G8A355_MEDTR
SoyBase E_val: 0 ISS
UniRef100_I1KRR8 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KRR8_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma08g09960
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma08g09960
Paralog Evidence Comments
Glyma05g26980 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma08g09960 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.08g094100 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma08g09960
Coding sequences of Glyma08g09960
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma08g09960.1 sequence type=CDS gene model=Glyma08g09960 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGATTGGAAGTAAAGATCGTTCTGCTGACTTTGAAGGTGAGAACTCCAGGAGCAAGCTTTCAAGGCACAATTTTGAGGCCAACAAGGAGTACCCAGATGAAAAAGGTGTTGAATTTCTGAGGGATTCATCAGAAGTGGGTGGTTGTGGTGGCAGCTCAGGGTTGCAAGAGTTGACCCTCAGCTACCTTTGTGACAACCCAAAATTCAATCTTGCTGAGAAAGAGATTCCTGGTAAAAGCTTGTTGGAGAAAATGAGCCACAAAGGTAAAGAGGTTGTGGTATGTGAGAATTCATATCAAGATGGGAAATGGGTGGAAAGAGATTTCCTCAGCCTGAGTGAGCCAAGAGAAGATTCTTCAAAGAGATCCCTTGAGGAAGTTGTTGAGAGAGAGAGTAATAGGGAGAAGAAGCCAAAATTAGAGATTCTCAACCTCTCTCTTGCTTTGCCTGATGTGTCACTTTCCCTCACAGCCTCAAACGCCTTGCAAAACGGTGGTGATCATCAACAACAAGTTAGGACTAATCCTTGCAGGCCATCATCCACTACTCACACTTCATATTCCAATGACTACACTGCAGCTTCTTTGTCTTACTCTTATTCCCACCCTTTCTCTCACAACCCAAGTTGTTCACTCACCCACAATTCAACTGATATGTTTGATTACTCAGTGAGCAAAGATGACCAAATTTGGAACTGTGGAGAGGGAACTAATGGCTCAGTGCATAGTAGGTTCAAGCCAATTAGAGATGGCTTGGTTGGTTTATCCAACCATGGTGGTGGTGGTGGTATTAGTTCCTTTATGCAAGGTAATAATAATAGTCAGTATAAAACTACTACTAGTTCAGATAACCATTCTTTTTTCCCTTCAGAGTTGCCAGCAAGGCCAAGGTTTGAGGCTCAGTCAGGGGACTCAAGAGGGAGGAATTCTGAGAATCTGAGAGTCTTGGATGATGGGAAGGCAAGGAAGATTTCTAGGCCAGAGAGGATTGTTAGGGAAATTGTTTCAGAGTCTATACCTGTCATGACATTGACAATTCAGGAGCTTACTGATGATGTCATAGCATCAACTAAGGAATACTTGAGGAATCTCATTGAGAAGCCTGAGAAGAAAGAGGAACTGGTAAGCCTGCAAAGCCGGCTCGAGAGAAGATCTGACCTTACCAAGGAGAGTCTTTCAAAGTGCCATAAGGTGCAATTAGAGGTTTTAGTGGCTGTCAAGATGGGGCTTGCTAGCTTCCTATCTAGTCAGATTCAGTTGTCTGAGATGGTAGAGGTTTTCTTGTTTAAGAGGTGTAGGAATGTAACCTGCAAGCATTTGCTTCCTGTTGATGATTGTGACTGCAAGATTTGCTCAGGGAACAAGGGCTTTTGCAGTTCTTGCATGTGTCCTGTCTGTTTGAACTTTGATTGTGCAAGCAACACTTGTAGTTGGATTGGATGTGATGTTTGTTCACATTGGTGCCATGCTACTTGTGGCATTCAGAGGAATCTTATCAAGCCTGGGCCTAGCTTGAAGGGGCCTTCAGGGACCTCGGAGATGCAGTTTCATTGTATTGGCTGTGGACATGCCTCAGAAATGTTTGGTTTCGTTAAGGACGTCTTCGTGTGTTGCGCAAAGGATTGGGGGCTTGAAACCTTGATGAAAGAGCTTGACTGTGTAAGGAAGATCTTCATGGGAAGTGAAGATCGCAAAGGGAAGGAATTGCATGTTAAAACTGATGACATGCTATTAAAGCTTCAAACTAGAATGATATCTCCTTCGGATGCCAGCAGTTACATCATGCAATATTTCAGCTATGCGGACAGCATGCCAGACTTTCCTGCTTCTGGTATTTCTTCAAAGGATTTGTCAGCCTCTCAATCTAACCTTACAAAGGATACACCATCTCTTTCAAAACCTAATTCTCTATTACCAAAATATGGTTATGACATGGGCTATTCTAGGTCACATCCTGATGCCATGTCATGTGATCTACTTCAGAAAGACCTCAAAGCTTCCATCTTAAGTGAACTGAAAAATGAGGCTGATTTTCATTTGGGGGCCTTATTAAGGAAAGGTGGACTTGAAAGTTTGGAGAGCATTGTGAGGATAAAGGAGGCAGAAGCCAGAATGTTTCAAACCAAGGCAGATGAAGCAAGAAGAGAGGCAGAAGGGTTCCAGAGGATGATCAGGACGAAGACTGCGCAGATGGAAGAAGAGTACGCCGAAAAGCTTTCCAAACTCTGTTTGCATGAGACCGAGGAAACGCAGAGGAAGAAATTGGATGAACTGAAAGTCTTGGAAAATTCTTATTTTGATTACTATAAGATGAAAAAGAGAATGCAAGATGAGATTGATGGTTTGTTGCGGAGAATGGAGGCAACAAAGCAGCAATGGGTTTAA
Predicted protein sequences of Glyma08g09960
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma08g09960.1 sequence type=predicted peptide gene model=Glyma08g09960 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MIGSKDRSADFEGENSRSKLSRHNFEANKEYPDEKGVEFLRDSSEVGGCGGSSGLQELTLSYLCDNPKFNLAEKEIPGKSLLEKMSHKGKEVVVCENSYQDGKWVERDFLSLSEPREDSSKRSLEEVVERESNREKKPKLEILNLSLALPDVSLSLTASNALQNGGDHQQQVRTNPCRPSSTTHTSYSNDYTAASLSYSYSHPFSHNPSCSLTHNSTDMFDYSVSKDDQIWNCGEGTNGSVHSRFKPIRDGLVGLSNHGGGGGISSFMQGNNNSQYKTTTSSDNHSFFPSELPARPRFEAQSGDSRGRNSENLRVLDDGKARKISRPERIVREIVSESIPVMTLTIQELTDDVIASTKEYLRNLIEKPEKKEELVSLQSRLERRSDLTKESLSKCHKVQLEVLVAVKMGLASFLSSQIQLSEMVEVFLFKRCRNVTCKHLLPVDDCDCKICSGNKGFCSSCMCPVCLNFDCASNTCSWIGCDVCSHWCHATCGIQRNLIKPGPSLKGPSGTSEMQFHCIGCGHASEMFGFVKDVFVCCAKDWGLETLMKELDCVRKIFMGSEDRKGKELHVKTDDMLLKLQTRMISPSDASSYIMQYFSYADSMPDFPASGISSKDLSASQSNLTKDTPSLSKPNSLLPKYGYDMGYSRSHPDAMSCDLLQKDLKASILSELKNEADFHLGALLRKGGLESLESIVRIKEAEARMFQTKADEARREAEGFQRMIRTKTAQMEEEYAEKLSKLCLHETEETQRKKLDELKVLENSYFDYYKMKKRMQDEIDGLLRRMEATKQQWV*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
