Glyma08g09930 - SoyBase

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Report for Sequence Feature Glyma08g09930

Feature Type:	gene_model
Chromosome:	Gm08
Start:	7097380
stop:	7103572
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g09930

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G14710	AT	Annotation by Michelle Graham. TAIR10: hydroxyproline-rich glycoprotein family protein \| chr1:5062168-5064697 REVERSE LENGTH=601	SoyBase	E_val: 9.00E-175	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
UniRef100_F4HWB0	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Hydroxyproline-rich glycoprotein-like protein n=1 Tax=Arabidopsis thaliana RepID=F4HWB0_ARATH	SoyBase	E_val: 4.00E-172	ISS
UniRef100_I1KRR5	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KRR5_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma08g09930

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g09930

Paralog	Evidence	Comments
Glyma05g26950	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g09930 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g093800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g09930

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma08g09930

Limit To All Plant Sequences

>Glyma08g09930.1   sequence type=CDS   gene model=Glyma08g09930   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCAATGCCATCGGGAAATGTGGTAATACAAGACAAAATGCAGTTTCCAAGTGGTGCTGGTGGCGGTGGCGGCGGCGGCGGTGCTGGCGGAGAGATCCACCAGCCCCACCACTACCGCCCGCAATGGTTTGTTGATGAGAGGGATGGACTTATTGGTTGGCTGCGAAGTGAATTCGCAGCTGCCAATGCCATCATAGACTCCCTTTGTCACCATTTACGTGTTGTTGGTGATCCTGGGGAGTATGATATGGTCGTTGGGGCCATTCAGCAGAGGAGGTGTAATTGGAACCAGGTGCTGATGATGCAGCAATACTTTTCTGTGGCTGACGTGGCATATGCGCTGCAGCAAGTGGCGTGGAGGAGACAGCAGAGGCCTCTGGATCCAATGAAAGTGGGTGCAAAGGAAGTTAGGAAATCCGGTTCTGGATACCGGCATGGGCAGAGGTTTGAGTCTGTAAAGGAAGGTTATAATTCTAGTGTAGAGTCTTATAGTCATGATGCAAATGTCGCAGTTACTGGAGGCACGGAGAAAGGGACTCCAGTTGTTGAGAAGAGTGAAGAACATAAATCAGGTGGAAAGGTTGAGAAAGTGGGGGATAAGGGTTTAGCATCTGTTGAAGAGAAGAAAGATGCTATAACAAATCATCAAAGTGAAGGCAGCTTGAAGAGTGCAAGGAGTACTGAAGGATCTTTGTCTAACTTAGAATCCGAAGCTGTTGTAAATGATGGATGTATATCTAATTCTAAAGGGAACGATTTACATTCTGTGCAAAATCAAAGTCAGAGCCAAAGTCTTTCTAACATAGCAAAAACTTTTATTGGCAATGAAATGTTTGATGGGAAGACGGTGAATGTGGTTGATGGACTAAAGTTGTATGACGATTTATTTGATAGCACTGAAGTTGCAAATCTTGTTTCACTGGTCAATGATCTAAGGGTTTCTGGAAAAAAAGGACAGTTACAAGGAAGTCAGGCATATATAGTTTCAAGAAGGCCCATGAAAGGGCATGGAAGGGAGATGATTCAGTTGGGTGTTCGAATTGCTGATGCCCCAGCAGAAGGGGAAAATATGACAGGAGCCTCCAAAGATATGAATGTAGAATCTATTCCTTCCTTGTTTCAAGATATTATTGAGCGTATGGTTTCCTCGCAAGTAATGACTGTGAAGCCTGATTGCTGCATTGTGGATTTCTATAATGAGGGTGATCACTCACAACCCCACAGTTGGCCATCATGGTATGGAAGGCCTGTTTATGTGCTTTTTCTGACTGAATGTGAAATGACTTTTGGAAGAGTAATTGCCTCAGAGCATCCTGGGGATTATAGGGGCAGTATCAAGCTTTCTCTAGTTCCTGGGTCCCTTCTGGTTATGCAGGGTAAATCCAGTGATTTTGCTAAGCATGCTCTTCCTTCCACACGCAAACAACGCATACTGGTTACCTTCACAAAGTCCCAACCAAGAAAGTCACTATCAAGTGATGCTCAACAGCTTGCCTCGGCAGTAGCATCTTCTCATTGGGGTCCACCGCCAAGCCGATCTCCCAATCATGTTCGTCATCACGTAGGCCCCAAGCATTACGCTACACTTCCAACAACTGGGGTACTGCCAGCTCCACCCATTCGACCACAAATGGCAGCTCCCGTTGGCATGCAACCATTGTTTGTTGCTGCTCCAGTTGTACCTCCCATGCCATTTTCTGCACCTGTGCCAATCCCAGCTGGTTCTACCGGATGGACAGCTGCACCTCCTCCAAGGCATCCTCCTCCTCGAGTCCCTGCTCCTGGAACAGGAGTCTTCCTACCTCCATCGGGCTCAGGTAATTCATCTCAACAGTTACCAGCAAGTACTTTGGCTGAAGTGAACCCAAGCACGGAAACTCCAACCATGCCGGAGAAGGAAAATGGGAAAATTAATCATAATAGTACAAGTGCTTCACCAAAAGGAAAAGTGCAAAAGCAAGAATGCAATGGGCATGCTGATGGAACTCAAGTTGAACCAGCTCTAGAGACACGGCTAGATAGCAATGACAAAGCTGCACCAAGTCATTGA

Predicted protein sequences of Glyma08g09930

Limit To All Plant Sequences

>Glyma08g09930.1   sequence type=predicted peptide   gene model=Glyma08g09930   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAMPSGNVVIQDKMQFPSGAGGGGGGGGAGGEIHQPHHYRPQWFVDERDGLIGWLRSEFAAANAIIDSLCHHLRVVGDPGEYDMVVGAIQQRRCNWNQVLMMQQYFSVADVAYALQQVAWRRQQRPLDPMKVGAKEVRKSGSGYRHGQRFESVKEGYNSSVESYSHDANVAVTGGTEKGTPVVEKSEEHKSGGKVEKVGDKGLASVEEKKDAITNHQSEGSLKSARSTEGSLSNLESEAVVNDGCISNSKGNDLHSVQNQSQSQSLSNIAKTFIGNEMFDGKTVNVVDGLKLYDDLFDSTEVANLVSLVNDLRVSGKKGQLQGSQAYIVSRRPMKGHGREMIQLGVRIADAPAEGENMTGASKDMNVESIPSLFQDIIERMVSSQVMTVKPDCCIVDFYNEGDHSQPHSWPSWYGRPVYVLFLTECEMTFGRVIASEHPGDYRGSIKLSLVPGSLLVMQGKSSDFAKHALPSTRKQRILVTFTKSQPRKSLSSDAQQLASAVASSHWGPPPSRSPNHVRHHVGPKHYATLPTTGVLPAPPIRPQMAAPVGMQPLFVAAPVVPPMPFSAPVPIPAGSTGWTAAPPPRHPPPRVPAPGTGVFLPPSGSGNSSQQLPASTLAEVNPSTETPTMPEKENGKINHNSTSASPKGKVQKQECNGHADGTQVEPALETRLDSNDKAAPSH*

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