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Report for Sequence Feature Glyma08g09910

Feature Type:gene_model
Chromosome:Gm08
Start:7087047
stop:7092936
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G01890AT Annotation by Michelle Graham. TAIR10: purple acid phosphatase 8 | chr2:396985-399168 REVERSE LENGTH=335 SoyBaseE_val: 6.00E-146ISS
GO:0010167GO-bp Annotation by Michelle Graham. GO Biological Process: response to nitrate SoyBaseN/AISS
GO:0015706GO-bp Annotation by Michelle Graham. GO Biological Process: nitrate transport SoyBaseN/AISS
GO:0016311GO-bp Annotation by Michelle Graham. GO Biological Process: dephosphorylation SoyBaseN/AISS
GO:0005576GO-cc Annotation by Michelle Graham. GO Cellular Compartment: extracellular region SoyBaseN/AISS
GO:0003993GO-mf Annotation by Michelle Graham. GO Molecular Function: acid phosphatase activity SoyBaseN/AISS
GO:0004722GO-mf Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine phosphatase activity SoyBaseN/AISS
GO:0016787GO-mf Annotation by Michelle Graham. GO Molecular Function: hydrolase activity SoyBaseN/AISS
KOG2679 KOG Purple (tartrate-resistant) acid phosphatase JGI ISS
PTHR10161Panther ACID PHOSPHATASE-RELATED JGI ISS
PF00149PFAM Calcineurin-like phosphoesterase JGI ISS
UniRef100_D2D4J4UniRef Annotation by Michelle Graham. Most informative UniRef hit: Purple acid phosphatase 3 n=1 Tax=Phaseolus vulgaris RepID=D2D4J4_PHAVU SoyBaseE_val: 0ISS
UniRef100_I1KRR2UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1KRR2_SOYBN SoyBaseE_val: 0ISS

LocusGene SymbolProtein Name
PAP16 Purple acid phosphatase 16 gene
PAP16 Purple acid phosphatase gene 16

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

ParalogEvidenceComments
Glyma05g26930 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Corresponding NameAnnotation VersionEvidenceComments
Glyma.08g093600 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma08g09910.2   sequence type=transcript   gene model=Glyma08g09910   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ACTTAACAAAAGAAAACTAATCACAAGTAATAATTTGAAAAAAAAAATTTCAGATAATTATTTGACAAAAAATAAATTTTTAGATAGTAATCTAAAAATATCTATTTTTTAGGTATAAAAACTTAATTTTTACGAAGATGGAGGTGTATCCAGCGAGTAATAACTCTTCATTGCTTTTTTTAGATGGGAATTGTGGGGGAGAAACTAGATATAGATTTTGTGATCTCCACAGGTGACAATTTTTACGAAGATGGACTAAAAGGGGTTGATGATCCAGCATTCTACCAGTCTTTCATCCACATGTACACTGCCCCCAGCTTGCAAAAGACATGGTACACTGTTCTGGGTAACCATGACTACAGAGGCGATGTTGAGGCACAACTAAGTCCAATTCTAAAACAAAAAGATAGCAGATGGCTTTGCATGAGATCTTTTATTCTCGATGGAGAAATTGTGGAATTTTTCTTTGTGGACACGACTCCATTTGTCGAGGAGTACTTCACGGACCCAGGAGAACATACCTATGACTGGGAAGGCGTGCTTCCTCGCCTAGCTTACGTTTCAAAACTCTTGAAGGATGTTGATTCAGCTTTGGCTCAATCAAAAGCAAAATGGAAGATGGTGGTGGGTCATCATACCATCAATAGTGCTGGGCATCATGGTAGCACCGAAGATCTTAAACAGCTACTTGTTCCCATCTTAGAGGCAAACAACGTTGATGCATACATAAATGGGCATGACCACTGCTTGCAGCACATAATTGACAATAATAATGGAATTCACTTTATAACAAGTGGAGGGGGATCAAAGGCATGGTCAGGCGATGTCAAGCCGTGGAAACTGGAAGAACTGAAGTTGTATTATGATGGGCAAGGATTCATGTCTATGCAGATCACCAAAAGCACTGCATATATCATATTTTATGATGCTTTTGGCAAAGTTTTGCATACATGGAGCATATCCAAAGACCGTAACGTAGCAGCCTGGATATAATAAGCTAAAGTACACACATTACCAGCTCTATGTTATGAAAATGGAGGTCCCTATGGCTGGCAAATAGGACAACTTTAAAAATGTACTATTTGTAACAAAGTAAAGAAGAAAAAAGAACGTTTAGAGAAGTCCTAATGGTCTTGCAGTAGCTGTAATATTGCACCCAAACACGTGCTACCGAAGTTTGAGAAACAAAGGCATACAGTACATTGTAGTATTTGCAACCTAGTATTGATGCAGAAAAATCATGAGTCACTTAGCAGGGCAACCCAATCTACATCAAGTATGCATAACACTTAAATTTATGATAAATCTCGAGATATCTGTTAGTCACATTTCTCATTTCTTCCCAAGAAGCTTTGCCTTAAAACTTTCCCAAAGCACATTAAATTGAATAATGCTATCAAAGCAAACCTTCACAAACTACTTTTTAGTTGTTTCAACAGTGCTTTTCTCCAAATTTTTAACCCAAGCACAATTGTAGGTGGTTACTTTTTCTTGGAATTGTTGATCACAAATACTACTCTAATTGCACATTATATATAGACTCATGCATTCTCCAGTAAGGCAACTGTAAATGAATTTGTTTGCTTAAGTTTGACGCATAATCTTCCCAAGCAGCAACTGCAGCTAGAACTTCTGACCAGTCAAAGCAAATGCATCCCTTTTCTTCCGAAGGCATATTACAGAAAACTTTGGATGCAAAATCATTATCATTCAAAAGTACAGAATTCAGACCACTGATTTTCTCTCTCTGTACCTCTGTCACTTTTAGTACCTTGGAGTCTATATTTGACATGTTGTTCAGTAAAGCTGATCCTTTCCAACAATAGAAATGGACAACCTGTTCAAGCAAAGAACATGAATCAGAGTAGTTGCAGAAACTTTTCCAAAAGCAATCAAGATTATAAATTGCAA

>Glyma08g09910.1   sequence type=CDS   gene model=Glyma08g09910   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTTCATCTTTAAACCAACGCATGGTATTCCCTGTTATGGTCGTAGTTGGTATGTTTTGCTTATTGGTAACTCCTTCTATTGCCGAACTTCCAAGATTCAAACACCCTCCAAAAAAACAACAATCTCTTAATATATTGGTCCTTGGAGATTGGGGAAGAAAAGGAACCTACAATCAATCTTTGGTCGCCAATCAGATGGGAATTGTGGGGGAGAAACTAGATATAGATTTTGTGATCTCCACAGGTGACAATTTTTACGAAGATGGACTAAAAGGGGTTGATGATCCAGCATTCTACCAGTCTTTCATCCACATGTACACTGCCCCCAGCTTGCAAAAGACATGGTACACTGTTCTGGGTAACCATGACTACAGAGGCGATGTTGAGGCACAACTAAGTCCAATTCTAAAACAAAAAGATAGCAGATGGCTTTGCATGAGATCTTTTATTCTCGATGGAGAAATTGTGGAATTTTTCTTTGTGGACACGACTCCATTTGTCGAGGAGTACTTCACGGACCCAGGAGAACATACCTATGACTGGGAAGGCGTGCTTCCTCGCCTAGCTTACGTTTCAAAACTCTTGAAGGATGTTGATTCAGCTTTGGCTCAATCAAAAGCAAAATGGAAGATGGTGGTGGGTCATCATACCATCAATAGTGCTGGGCATCATGGTAGCACCGAAGATCTTAAACAGCTACTTGTTCCCATCTTAGAGGCAAACAACGTTGATGCATACATAAATGGGCATGACCACTGCTTGCAGCACATAATTGACAATAATAATGGAATTCACTTTATAACAAGTGGAGGGGGATCAAAGGCATGGTCAGGCGATGTCAAGCCGTGGAAACTGGAAGAACTGAAGTTGTATTATGATGGGCAAGGATTCATGTCTATGCAGATCACCAAAAGCACTGCATATATCATATTTTATGATGCTTTTGGCAAAGTTTTGCATACATGGAGCATATCCAAAGACCGTAACGTAGCAGCCTGGATATAA

>Glyma08g09910.2   sequence type=CDS   gene model=Glyma08g09910   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGAATTGTGGGGGAGAAACTAGATATAGATTTTGTGATCTCCACAGGTGACAATTTTTACGAAGATGGACTAAAAGGGGTTGATGATCCAGCATTCTACCAGTCTTTCATCCACATGTACACTGCCCCCAGCTTGCAAAAGACATGGTACACTGTTCTGGGTAACCATGACTACAGAGGCGATGTTGAGGCACAACTAAGTCCAATTCTAAAACAAAAAGATAGCAGATGGCTTTGCATGAGATCTTTTATTCTCGATGGAGAAATTGTGGAATTTTTCTTTGTGGACACGACTCCATTTGTCGAGGAGTACTTCACGGACCCAGGAGAACATACCTATGACTGGGAAGGCGTGCTTCCTCGCCTAGCTTACGTTTCAAAACTCTTGAAGGATGTTGATTCAGCTTTGGCTCAATCAAAAGCAAAATGGAAGATGGTGGTGGGTCATCATACCATCAATAGTGCTGGGCATCATGGTAGCACCGAAGATCTTAAACAGCTACTTGTTCCCATCTTAGAGGCAAACAACGTTGATGCATACATAAATGGGCATGACCACTGCTTGCAGCACATAATTGACAATAATAATGGAATTCACTTTATAACAAGTGGAGGGGGATCAAAGGCATGGTCAGGCGATGTCAAGCCGTGGAAACTGGAAGAACTGAAGTTGTATTATGATGGGCAAGGATTCATGTCTATGCAGATCACCAAAAGCACTGCATATATCATATTTTATGATGCTTTTGGCAAAGTTTTGCATACATGGAGCATATCCAAAGACCGTAACGTAGCAGCCTGGATATAA

>Glyma08g09910.1   sequence type=predicted peptide   gene model=Glyma08g09910   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASSLNQRMVFPVMVVVGMFCLLVTPSIAELPRFKHPPKKQQSLNILVLGDWGRKGTYNQSLVANQMGIVGEKLDIDFVISTGDNFYEDGLKGVDDPAFYQSFIHMYTAPSLQKTWYTVLGNHDYRGDVEAQLSPILKQKDSRWLCMRSFILDGEIVEFFFVDTTPFVEEYFTDPGEHTYDWEGVLPRLAYVSKLLKDVDSALAQSKAKWKMVVGHHTINSAGHHGSTEDLKQLLVPILEANNVDAYINGHDHCLQHIIDNNNGIHFITSGGGSKAWSGDVKPWKLEELKLYYDGQGFMSMQITKSTAYIIFYDAFGKVLHTWSISKDRNVAAWI*

>Glyma08g09910.2   sequence type=predicted peptide   gene model=Glyma08g09910   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGIVGEKLDIDFVISTGDNFYEDGLKGVDDPAFYQSFIHMYTAPSLQKTWYTVLGNHDYRGDVEAQLSPILKQKDSRWLCMRSFILDGEIVEFFFVDTTPFVEEYFTDPGEHTYDWEGVLPRLAYVSKLLKDVDSALAQSKAKWKMVVGHHTINSAGHHGSTEDLKQLLVPILEANNVDAYINGHDHCLQHIIDNNNGIHFITSGGGSKAWSGDVKPWKLEELKLYYDGQGFMSMQITKSTAYIIFYDAFGKVLHTWSISKDRNVAAWI*







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