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Report for Sequence Feature Glyma08g09900

Feature Type:gene_model
Chromosome:Gm08
Start:7082391
stop:7086568
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma08g09900
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G14700AT Annotation by Michelle Graham. TAIR10: purple acid phosphatase 3 | chr1:5058680-5060988 FORWARD LENGTH=366 SoyBaseE_val: 1.00E-161ISS
GO:0005576GO-cc Annotation by Michelle Graham. GO Cellular Compartment: extracellular region SoyBaseN/AISS
GO:0005773GO-cc Annotation by Michelle Graham. GO Cellular Compartment: vacuole SoyBaseN/AISS
GO:0003993GO-mf Annotation by Michelle Graham. GO Molecular Function: acid phosphatase activity SoyBaseN/AISS
GO:0004722GO-mf Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine phosphatase activity SoyBaseN/AISS
GO:0016787GO-mf Annotation by Michelle Graham. GO Molecular Function: hydrolase activity SoyBaseN/AISS
KOG2679 KOG Purple (tartrate-resistant) acid phosphatase JGI ISS
PTHR10161Panther ACID PHOSPHATASE-RELATED JGI ISS
PF00149PFAM Calcineurin-like phosphoesterase JGI ISS
UniRef100_B9SNI4UniRef Annotation by Michelle Graham. Most informative UniRef hit: Tartrate-resistant acid phosphatase type 5, putative n=1 Tax=Ricinus communis RepID=B9SNI4_RICCO SoyBaseE_val: 1.00E-159ISS
UniRef100_C6T9R7UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6T9R7_SOYBN SoyBaseE_val: 0ISS

Proteins Associated with Glyma08g09900
LocusGene SymbolProtein Name
PAP15 Purple acid phosphatase 15 gene
PAP15 Purple acid phosphatase gene 15

Expression Patterns of Glyma08g09900
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma08g09900 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.08g093500 Wm82.a2.v1IGC As supplied by JGI

References for Glyma08g09900
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma08g09900
>Glyma08g09900.1   sequence type=CDS   gene model=Glyma08g09900   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGCACTCAGAGAAGCAAACCCAGTTGTACCATCGTTGCGATCTTTCTAGCATTTTGTTGTTTTGTTTCTTCTTCGAAAGCAAAGCTTGAGAGTCTCCAACATGCGCCCAAAGCTGATGGGTCTCTAAGCTTCTTGGTGGTTGGAGACTGGGGTAGAAAAGGTGCTTATAACCAATCTCTTGTCGCTTTTCAGATGGGTGTAATAGGAGAGAAATTGGACGTTGATTTTGTGATCTCAACGGGGGATAACTTCTACGACAATGGATTAACCGGAGTGTTTGATCCATCCTTCGAAGAATCATTCACCAAAATCTACACGGCACCTAGCTTGCAGAAGAAGTGGTACAACGTTTTGGGAAATCATGACTACAGGGGAAATGCCAAGGCACAAATAAGCCATGTCCTTAGATACAGAGACAATAGATGGGTGTGCTTCAGATCATATACCCTCAATTCAGAAAATGTAGACTTCTTTTTTGTAGACACAACTCCTTTTGTTGATAAATACTTCATTGAGGATAAAGGCCATAACTACGATTGGAGAGGCATACTACCCAGGAAGCGTTATATTTCTAACCTTCTCAAGGACGTGGATTTGGCACTAAGACAATCAACAGCAACCTGGAAGGTAGTGATTGGCCATCATACAATCAAAAGCATTGGGCATCATGGAGACACCCAAGAACTTTTAATACATTTTCTCCCACTTCTTAAGGCAAATAATGTTGATTTGTACATAAACGGACACGATCACTGCTTGGAACATATAAGTAGCCTTGACAGTTCAGTTCAATTTTTGACAAGTGGTGGTGGATCGAAGGCATGGAGAGGTGACACGAAACAGAGCGAAGGAGATGAGATGAAGTTTTACTACGACGGCCAAGGCTTCATGTCTGTGCATATTTCTCAAACTCAGCTTCGAATTTCTTTCTTTGATGTCTTCGGCAATGCCATCCACAAATGGAACACCTGCAAGTTTGACTCCTGTGACATGTAA
Predicted protein sequences of Glyma08g09900
>Glyma08g09900.1   sequence type=predicted peptide   gene model=Glyma08g09900   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGTQRSKPSCTIVAIFLAFCCFVSSSKAKLESLQHAPKADGSLSFLVVGDWGRKGAYNQSLVAFQMGVIGEKLDVDFVISTGDNFYDNGLTGVFDPSFEESFTKIYTAPSLQKKWYNVLGNHDYRGNAKAQISHVLRYRDNRWVCFRSYTLNSENVDFFFVDTTPFVDKYFIEDKGHNYDWRGILPRKRYISNLLKDVDLALRQSTATWKVVIGHHTIKSIGHHGDTQELLIHFLPLLKANNVDLYINGHDHCLEHISSLDSSVQFLTSGGGSKAWRGDTKQSEGDEMKFYYDGQGFMSVHISQTQLRISFFDVFGNAIHKWNTCKFDSCDM*






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