SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G38460 | AT | Annotation by Michelle Graham. TAIR10: geranylgeranyl reductase | chr4:17994849-17995974 FORWARD LENGTH=326 | SoyBase | E_val: 4.00E-136 | ISS |
| GO:0008299 | GO-bp | Annotation by Michelle Graham. GO Biological Process: isoprenoid biosynthetic process | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0004161 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: dimethylallyltranstransferase activity | SoyBase | N/A | ISS |
| GO:0005515 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein binding | SoyBase | N/A | ISS |
| KOG0776 | KOG | Geranylgeranyl pyrophosphate synthase/Polyprenyl synthetase | JGI | ISS | |
| PTHR12001 | Panther | GERANYLGERANYL PYROPHOSPHATE SYNTHASE | JGI | ISS | |
| PTHR12001:SF8 | Panther | gb def: octaprenyl-diphosphate synthase [treponema pallidum] | JGI | ISS | |
| PF00348 | PFAM | Polyprenyl synthetase | JGI | ISS | |
| UniRef100_B9SUY3 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Geranyl geranyl pyrophosphate synthase, putative n=1 Tax=Ricinus communis RepID=B9SUY3_RICCO | SoyBase | E_val: 7.00E-173 | ISS |
| UniRef100_I1KRQ8 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KRQ8_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma08g09890 not represented in the dataset |
Glyma08g09890 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.08g093400 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma08g09890.3 sequence type=CDS gene model=Glyma08g09890 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCTCCTTTTGCTTTTGCAACATTGCCCTCTTCTCACATCTGCCGCCTCCCAAAGCCCACAAACTTGAAGTTTCGAGTTCGCTGCTCTACTGCCGCGTCTTCTCCTTCTTCGGTTTCCACTAGATCAAAAGCTGCTGGCTTTGATTTGAAGACATACTGGGCCAACCTAATGGTGCAGATCAATCAGAAGCTGGACGAAGCTATCCCGGTTCAGTTTCCTCCGCAGATATATGAAGCTATGAGGTATTCAGTCCTTGCCAAAGGTGCCAAGCGAGCCCCACCTGTTATGTGCATCTCTGCCTGTGAACTCTTTGGTGGCAGCCGCCTTGCCGCCTTTCCCACTGCCTGTGCCCTTGAAATGGTTCATGCAGCTTCATTGATACACGATGATCTTCCCTGCATGGATGACTCCCCCTCACGCCGTGGTCAGCCTTCAAACCATACCATCTATGGTGTTGACATGGCAATTCTTGCGGGCGATGCACTCTTTCCCCTTGGATTTCGACACATTGTTTCACAAACTCCATCAGACCTTGTGCCTGAGTCGCACCTCCTTCGTGTGATTGCCGAGATAGCCCGCTCTGTAGGATCCACTGGAATGGCTGCAGGGCAGTTCCTGGACCTTGAAGGAGGACCCAATGCAGTTGGATTTATACAAGAAAAAAAGTTTGGTGAAATGGGGGAGTCTTCTGCAGTGTGTGGAGGATTCTTGGCTGGAGCTGAAGATGATGAGATAGAGAGACTGAGGAGGTATGGGAGAGCTGTTGGGGTATTGTATGCAGTTGTGGATGATATTATAGAAGAGAGATTGAAAGTTGAGGGAGATGGTGACAGGAAAAACAAGGGTAAGAGTTATGCAGAGGTTTATGGAGTTGAAAAGGCAATAGAAAAAGCTGAAGAGCTCAGAGCAAAGGCTAAAGAAGAATTGGATGGATTTGAGAAGCATGGGGAACGGGTCTTTCCTCTCTACAGTTTTGTGGATTATGCTTTTGATAGAAGTTTCAGTGTTGATGATGCCAGTGGATAA
>Glyma08g09890.3 sequence type=predicted peptide gene model=Glyma08g09890 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAPFAFATLPSSHICRLPKPTNLKFRVRCSTAASSPSSVSTRSKAAGFDLKTYWANLMVQINQKLDEAIPVQFPPQIYEAMRYSVLAKGAKRAPPVMCISACELFGGSRLAAFPTACALEMVHAASLIHDDLPCMDDSPSRRGQPSNHTIYGVDMAILAGDALFPLGFRHIVSQTPSDLVPESHLLRVIAEIARSVGSTGMAAGQFLDLEGGPNAVGFIQEKKFGEMGESSAVCGGFLAGAEDDEIERLRRYGRAVGVLYAVVDDIIEERLKVEGDGDRKNKGKSYAEVYGVEKAIEKAEELRAKAKEELDGFEKHGERVFPLYSFVDYAFDRSFSVDDASG*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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