Glyma08g09890 - SoyBase

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Report for Sequence Feature Glyma08g09890

Feature Type:	gene_model
Chromosome:	Gm08
Start:	7079380
stop:	7081725
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g09890

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G38460	AT	Annotation by Michelle Graham. TAIR10: geranylgeranyl reductase \| chr4:17994849-17995974 FORWARD LENGTH=326	SoyBase	E_val: 4.00E-136	ISS
GO:0008299	GO-bp	Annotation by Michelle Graham. GO Biological Process: isoprenoid biosynthetic process	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0004161	GO-mf	Annotation by Michelle Graham. GO Molecular Function: dimethylallyltranstransferase activity	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
KOG0776	KOG	Geranylgeranyl pyrophosphate synthase/Polyprenyl synthetase	JGI		ISS
PTHR12001	Panther	GERANYLGERANYL PYROPHOSPHATE SYNTHASE	JGI		ISS
PTHR12001:SF8	Panther	gb def: octaprenyl-diphosphate synthase [treponema pallidum]	JGI		ISS
PF00348	PFAM	Polyprenyl synthetase	JGI		ISS
UniRef100_B9SUY3	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Geranyl geranyl pyrophosphate synthase, putative n=1 Tax=Ricinus communis RepID=B9SUY3_RICCO	SoyBase	E_val: 7.00E-173	ISS
UniRef100_I1KRQ8	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KRQ8_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma08g09890

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma08g09890 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g093400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g09890

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma08g09890

Limit To All Plant Sequences

>Glyma08g09890.3   sequence type=CDS   gene model=Glyma08g09890   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTCCTTTTGCTTTTGCAACATTGCCCTCTTCTCACATCTGCCGCCTCCCAAAGCCCACAAACTTGAAGTTTCGAGTTCGCTGCTCTACTGCCGCGTCTTCTCCTTCTTCGGTTTCCACTAGATCAAAAGCTGCTGGCTTTGATTTGAAGACATACTGGGCCAACCTAATGGTGCAGATCAATCAGAAGCTGGACGAAGCTATCCCGGTTCAGTTTCCTCCGCAGATATATGAAGCTATGAGGTATTCAGTCCTTGCCAAAGGTGCCAAGCGAGCCCCACCTGTTATGTGCATCTCTGCCTGTGAACTCTTTGGTGGCAGCCGCCTTGCCGCCTTTCCCACTGCCTGTGCCCTTGAAATGGTTCATGCAGCTTCATTGATACACGATGATCTTCCCTGCATGGATGACTCCCCCTCACGCCGTGGTCAGCCTTCAAACCATACCATCTATGGTGTTGACATGGCAATTCTTGCGGGCGATGCACTCTTTCCCCTTGGATTTCGACACATTGTTTCACAAACTCCATCAGACCTTGTGCCTGAGTCGCACCTCCTTCGTGTGATTGCCGAGATAGCCCGCTCTGTAGGATCCACTGGAATGGCTGCAGGGCAGTTCCTGGACCTTGAAGGAGGACCCAATGCAGTTGGATTTATACAAGAAAAAAAGTTTGGTGAAATGGGGGAGTCTTCTGCAGTGTGTGGAGGATTCTTGGCTGGAGCTGAAGATGATGAGATAGAGAGACTGAGGAGGTATGGGAGAGCTGTTGGGGTATTGTATGCAGTTGTGGATGATATTATAGAAGAGAGATTGAAAGTTGAGGGAGATGGTGACAGGAAAAACAAGGGTAAGAGTTATGCAGAGGTTTATGGAGTTGAAAAGGCAATAGAAAAAGCTGAAGAGCTCAGAGCAAAGGCTAAAGAAGAATTGGATGGATTTGAGAAGCATGGGGAACGGGTCTTTCCTCTCTACAGTTTTGTGGATTATGCTTTTGATAGAAGTTTCAGTGTTGATGATGCCAGTGGATAA

Predicted protein sequences of Glyma08g09890

Limit To All Plant Sequences

>Glyma08g09890.3   sequence type=predicted peptide   gene model=Glyma08g09890   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAPFAFATLPSSHICRLPKPTNLKFRVRCSTAASSPSSVSTRSKAAGFDLKTYWANLMVQINQKLDEAIPVQFPPQIYEAMRYSVLAKGAKRAPPVMCISACELFGGSRLAAFPTACALEMVHAASLIHDDLPCMDDSPSRRGQPSNHTIYGVDMAILAGDALFPLGFRHIVSQTPSDLVPESHLLRVIAEIARSVGSTGMAAGQFLDLEGGPNAVGFIQEKKFGEMGESSAVCGGFLAGAEDDEIERLRRYGRAVGVLYAVVDDIIEERLKVEGDGDRKNKGKSYAEVYGVEKAIEKAEELRAKAKEELDGFEKHGERVFPLYSFVDYAFDRSFSVDDASG*

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