Report for Sequence Feature Glyma08g09870
Feature Type: gene_model
Chromosome: Gm08
Start: 7052558
stop: 7056911
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma08g09870
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT2G01900 AT
Annotation by Michelle Graham. TAIR10: DNAse I-like superfamily protein | chr2:406136-408933 FORWARD LENGTH=417
SoyBase E_val: 0 ISS
GO:0010413 GO-bp
Annotation by Michelle Graham. GO Biological Process: glucuronoxylan metabolic process
SoyBase N/A ISS
GO:0045492 GO-bp
Annotation by Michelle Graham. GO Biological Process: xylan biosynthetic process
SoyBase N/A ISS
GO:0046854 GO-bp
Annotation by Michelle Graham. GO Biological Process: phosphatidylinositol phosphorylation
SoyBase N/A ISS
GO:0005634 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleus
SoyBase N/A ISS
GO:0016787 GO-mf
Annotation by Michelle Graham. GO Molecular Function: hydrolase activity
SoyBase N/A ISS
KOG0565
KOG
Inositol polyphosphate 5-phosphatase and related proteins
JGI ISS
PTHR11200 Panther
INOSITOL 5-PHOSPHATASE
JGI ISS
PTHR11200:SF29 Panther
INOSITOL PHOSPHATASE SKIP
JGI ISS
PF03372 PFAM
Endonuclease/Exonuclease/phosphatase family
JGI ISS
UniRef100_G7IBG6 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Type II inositol-1,4,5-trisphosphate 5-phosphatase n=1 Tax=Medicago truncatula RepID=G7IBG6_MEDTR
SoyBase E_val: 0 ISS
UniRef100_I1KRQ5 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KRQ5_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma08g09870
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma08g09870
Paralog Evidence Comments
Glyma05g26900 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma08g09870 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.08g093200 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma08g09870
Coding sequences of Glyma08g09870
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma08g09870.1 sequence type=CDS gene model=Glyma08g09870 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGTGGCCTACATTAGTGGCTAATAAGATATTCAAGAAGAGACTTGGAAGCAGCAATTTTATAGCGGATTATCCTAGTTATAAAGAACCCTTGCTGGGTATTGTAGACATTGATCAGAACTCAAAAACCATTCTTAATGATCACAAGGACTCACACAAATACAAGGTATTTGTTAGTACATGGAACGTAGGTGGGATTGCACCGGATGAAGATTTGAATATAGATGATTTGTTGGAGACATGCAACAACTCTTGTGACATCTATATACTAGGGTTTCAAGAAATAGTGCCTCTAAAAGCATCAAATGTATTGGGGTCCGAAAACAATGAGATTTCTATGAAATGGAATTCCATAATCAGGGAAGCCTTGAACAAGAAAATAACACATCAAAGGGACAAAGATGCTAAAAAACAGGAGCTAAAGAATAATTTTCCCAATAAGAAAGAAAATCCAGCTAAGTGCTGTGATGCCCCACATGATTTCCAATGTATCATTAGCAAGCAAATGGTTGGATTATTCATATCTGTGTGGATTAGAAGAGATCTTTGTCCATTCATTCGGCATCCAAGCGTGTCATGTGTAGGTTGTGGGATAATGGGCTGCTTAGGAAACAAGGGTTCTATATCAGTGAGATTTCAGTTACATGAAACCAGCTTCTGCTTTGTGTGCAGCCATCTAGCTTCAGGGGGCAGAGAAGGGGATGAGAAGCACAGGAACTCTAATGTTGCTGAAATTTTTTCTCGGACAAGTTTTCCTAGAGGCCCTTTGCTTGATTTGCCTAGAACCATTCTTGATCATGATCATGTAATATTGCTTGGAGATCTAAATTACAGAATTTCTCTACCAGAAGAAACCACACGCTTGCTTGTTGAAAAAAGAGACTGGGATTCTTTATTAGCAAATGATCAGCTAATAATGGAGCTAATGAGTGGAAACATGTTAAGAGGATGGCACGAAGGAGCAATTAAATTTGCACCTACCTACAAATATTGTCCAAATTCAGACATTTACTATGGATGCTGCTATCATGGCAAAAAGGCAGAAAAGAGAAGAGCACCAGCATGGTGTGATCGAATAGTATGGTGCGGTGAGGGTCTAAAGCAACTTCAGTACACTACAATTGAATCAAAACTATCAGATCATAGGCCTGTTAAGGCAATGTTTATAGCAGAAGTCAGGGTTTTACCAGAGCTGATGAAAAACTTGCAAAGCTTGTTCCTATCAGAAAGATACGAGCAAATTAAAACTCCCTTTGAAGTTTCCACCACTGAAGATTTTGTAAATAGAAAACGATCAAGCTTCCGGTTGTGA
Predicted protein sequences of Glyma08g09870
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma08g09870.1 sequence type=predicted peptide gene model=Glyma08g09870 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MWPTLVANKIFKKRLGSSNFIADYPSYKEPLLGIVDIDQNSKTILNDHKDSHKYKVFVSTWNVGGIAPDEDLNIDDLLETCNNSCDIYILGFQEIVPLKASNVLGSENNEISMKWNSIIREALNKKITHQRDKDAKKQELKNNFPNKKENPAKCCDAPHDFQCIISKQMVGLFISVWIRRDLCPFIRHPSVSCVGCGIMGCLGNKGSISVRFQLHETSFCFVCSHLASGGREGDEKHRNSNVAEIFSRTSFPRGPLLDLPRTILDHDHVILLGDLNYRISLPEETTRLLVEKRDWDSLLANDQLIMELMSGNMLRGWHEGAIKFAPTYKYCPNSDIYYGCCYHGKKAEKRRAPAWCDRIVWCGEGLKQLQYTTIESKLSDHRPVKAMFIAEVRVLPELMKNLQSLFLSERYEQIKTPFEVSTTEDFVNRKRSSFRL*