Glyma08g09820 - SoyBase

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Report for Sequence Feature Glyma08g09820

Feature Type:	gene_model
Chromosome:	Gm08
Start:	7022025
stop:	7024427
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g09820

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G17020	AT	Annotation by Michelle Graham. TAIR10: senescence-related gene 1 \| chr1:5820258-5821741 FORWARD LENGTH=358	SoyBase	E_val: 3.00E-136	ISS
GO:0009737	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to abscisic acid stimulus	SoyBase	N/A	ISS
GO:0009793	GO-bp	Annotation by Michelle Graham. GO Biological Process: embryo development ending in seed dormancy	SoyBase	N/A	ISS
GO:0009813	GO-bp	Annotation by Michelle Graham. GO Biological Process: flavonoid biosynthetic process	SoyBase	N/A	ISS
GO:0009830	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell wall modification involved in abscission	SoyBase	N/A	ISS
GO:0009845	GO-bp	Annotation by Michelle Graham. GO Biological Process: seed germination	SoyBase	N/A	ISS
GO:0010162	GO-bp	Annotation by Michelle Graham. GO Biological Process: seed dormancy process	SoyBase	N/A	ISS
GO:0010260	GO-bp	Annotation by Michelle Graham. GO Biological Process: organ senescence	SoyBase	N/A	ISS
GO:0055114	GO-bp	Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0016491	GO-mf	Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity	SoyBase	N/A	ISS
GO:0016682	GO-mf	Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor	SoyBase	N/A	ISS
GO:0016706	GO-mf	Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	SoyBase	N/A	ISS
KOG0143	KOG	Iron/ascorbate family oxidoreductases	JGI		ISS
PTHR10209	Panther	FE(II)/ ASCORBATE OXIDASE SUPERFAMILY	JGI		ISS
PTHR10209:SF55	Panther	OXIDOREDUCTASE, 2OG-FE(II) OXYGENASE FAMILY PROTEI	JGI		ISS
PF03171	PFAM	2OG-Fe(II) oxygenase superfamily	JGI		ISS
UniRef100_B9S197	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Flavonol synthase/flavanone 3-hydroxylase, putative n=1 Tax=Ricinus communis RepID=B9S197_RICCO	SoyBase	E_val: 5.00E-155	ISS
UniRef100_C6TC18	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6TC18_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma08g09820

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g09820

Paralog	Evidence	Comments
Glyma05g26830	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g09820 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g092800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g09820

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma08g09820

Limit To All Plant Sequences

>Glyma08g09820.1   sequence type=CDS   gene model=Glyma08g09820   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAGTAACAGCTGCTCCAGTGCCTTATGTCCAAGAAATTGCAAAGGAGGCATTGACCATAGTGCCTGAGCGTTATGTTCGACCAGTTCATGAACGTCCTATATTATCTAACTCTACACCTTTACCTGAAATTCCTGTCATTGACTTGAGCAAATTGTTGTCTCAAGACCACAAGGAGCATGAACTCGACAGGCTTCACTATGCATGCAAAGAATGGGGTTTCTTTCAGCTAATTAATCACGGAGTGGACTCTTCATTGGTGGAAAAAGTGAAGAGAGGTGCTCAAGGATTATTCGATCTTCCAATGGAAGAGAAGAAAAAGTTTGGGCAGAGAGAAGGAGAAGCTGAGGGATATGGTCAACTCTTCGTGGTTTCAGAGGAACAGAAGTTAGAGTGGGCAGATTTGTTTTTCATGTTCACTTTGCCACCAAACAAGAGGAAACCCCACTTATTCCCCAACCTTCCCCTGCCATTCAGGGGTGATTTAGACGCCTATTGTGAAGAATTAAGAAAACTTGCAATCCAGATCCTTGACCAGATGGCCAATTCTCTTGCAATAGACCCAATGGAAATAAGAGAGTTATTTGGTGAAGCAGAACAATCAATGAGGATGAATTATTATCCACCATGTCCCCAACCAGAGCTTGTGATGGGACTCAATCCTCATTCTGATGGTGGAGGCCTCACCATCCTTCTCCAAGCCAATGAAGTGGAAGGTCTTCAAATAAGAAAAGATGGACTGTGGATTCCAGTTAAACCCCTTCCCAATGCTTTCATCATAAACCTTGGTGACATGTTGGAGGTGATGAGTAATGGAATCTACCAAAGCATAGAGCACAGGGCAACAGTTAACTCAGAGAAAGAGAGACTTTCCATAGCCACATTTTATAGCACTGCTATAGATGCAATTATATGTCCAGCACCAAGCCTTGTAACTCCAAAAACACCAGCAATGTTCAAACCAATCAGCGCGGGAGATTACTTCAAAGGATACCTTGCACAAGAACTTCGCGGGAAATCTTTCCTTGACACCATAAGAATTCATGCTGAAAATGAGAATAGCTCTTAG

Predicted protein sequences of Glyma08g09820

Limit To All Plant Sequences

>Glyma08g09820.1   sequence type=predicted peptide   gene model=Glyma08g09820   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEVTAAPVPYVQEIAKEALTIVPERYVRPVHERPILSNSTPLPEIPVIDLSKLLSQDHKEHELDRLHYACKEWGFFQLINHGVDSSLVEKVKRGAQGLFDLPMEEKKKFGQREGEAEGYGQLFVVSEEQKLEWADLFFMFTLPPNKRKPHLFPNLPLPFRGDLDAYCEELRKLAIQILDQMANSLAIDPMEIRELFGEAEQSMRMNYYPPCPQPELVMGLNPHSDGGGLTILLQANEVEGLQIRKDGLWIPVKPLPNAFIINLGDMLEVMSNGIYQSIEHRATVNSEKERLSIATFYSTAIDAIICPAPSLVTPKTPAMFKPISAGDYFKGYLAQELRGKSFLDTIRIHAENENSS*

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