Glyma08g09790 - SoyBase

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Report for Sequence Feature Glyma08g09790

Feature Type:	gene_model
Chromosome:	Gm08
Start:	7004012
stop:	7005865
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g09790

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G25240	AT	Annotation by Michelle Graham. TAIR10: ENTH/VHS/GAT family protein \| chr1:8845231-8846361 FORWARD LENGTH=376	SoyBase	E_val: 1.00E-112	ISS
GO:0048268	GO-bp	Annotation by Michelle Graham. GO Biological Process: clathrin coat assembly	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0030118	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: clathrin coat	SoyBase	N/A	ISS
GO:0005543	GO-mf	Annotation by Michelle Graham. GO Molecular Function: phospholipid binding	SoyBase	N/A	ISS
GO:0005545	GO-mf	Annotation by Michelle Graham. GO Molecular Function: 1-phosphatidylinositol binding	SoyBase	N/A	ISS
GO:0030276	GO-mf	Annotation by Michelle Graham. GO Molecular Function: clathrin binding	SoyBase	N/A	ISS
PTHR22951	Panther	CLATHRIN ASSEMBLY PROTEIN	JGI		ISS
PTHR22951:SF7	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF07651	PFAM	ANTH domain	JGI		ISS
UniRef100_B9S7D9	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Clathrin assembly protein, putative n=1 Tax=Ricinus communis RepID=B9S7D9_RICCO	SoyBase	E_val: 3.00E-124	ISS
UniRef100_I1KRP6	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KRP6_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma08g09790

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g09790

Paralog	Evidence	Comments
Glyma05g26800	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g09790 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g092500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g09790

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma08g09790

Limit To All Plant Sequences

>Glyma08g09790.1   sequence type=CDS   gene model=Glyma08g09790   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGGGTATTTGAAAGAGCGAGTGGAGCCATCAAGGACAAGAACAGCATTTGGGCTGCAAAATTCTCACGAAAGGGTCCACTCCACAACCCTGATTTAGAAACCGTGGTAATCAAGGCAACGAGCCACGACGATCACCACATAGATTCAAAGAACGTGCAAAGAGTGTTCCAGTGGTTACGAACTTCACCCTTGTACCTGAAGCCTCTCGTGTGGGCCCTCTCCATGCGCATGCAAAAGACTCGAAGCTGGGTCGTGGCGCTCAAAGGCTTGATGCTCATCCATGGCATTTACTGCTGTGACATTCCCGTTGTGAACCGCATGGGGAGGTTACCCTTTGACCTCTCAAACTTCTCCGATGGACACTTGAGCCCTGCAAAGGCTTGGAGCTTCAACGGTTTCGTTCGCGCTTATTTCGCCTATTTGGATCAGAGGTCATCGTTTGTGTCCTCCGAGGTTAAGCAGAAGAAGAATGTTAGTAATAACAAGAAGACGGAGGAGGTGGAGGAGACGTTGATGGAAGAGCTTGAGAAGCTGCAAAAGTTGCAAGGGATGATTGACATGCTTCTCCAGATCAGGCCAAAGGATGAGAATTTGAACATTGGTTTGATTCTTGAGGCTATGGATTGTATCATAGTCGAGGTTTTTGGTGTGTATAGTAAGTTTTGCAACAAGATTGCAAAAGTTTTGGTGAGGATATATGAGGTTGGTGGGAAGATGGAAGCGAATATTGGCCTCCAGGTTCTTCAGAAAGCATCGATTCAAGTGGAGGAGATATCTTTGTTCTTTGACTTGTGCAAGGATATTGGGGTCCTCAATGCATCTCAGTGCCCTAAGATTGATAGAATTTCACCGGAAGATATTCAAGATCTTGAGAGGATAATCAATGGTGCTTCTTCCAAGAAGGGTTGTGGTTTTGTGGGAAATGATGAGGATAATAATAAGGCCATTGTGGTGAGAGATTGTTCTTCCACTGCAATGGTTTCGCAACAGGAGGAGTCAGAGAATGGTTTAATGACCGTGATCACGCAACAATGGGAGGTGTTTGATGATGATCATGTAATCGTTGGTGCTAAAGGAATGGATAATGTATCTAATAATGGTGCAAAGGATATAATTGGCACCACAACCAACCCTTTTGAGGAATCATATAGCATCGTACCTTATGTTCCTGTTCATCACCATCAAGCTCTTCCTGATCTAATTAGTTGGTAG

Predicted protein sequences of Glyma08g09790

Limit To All Plant Sequences

>Glyma08g09790.1   sequence type=predicted peptide   gene model=Glyma08g09790   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MRVFERASGAIKDKNSIWAAKFSRKGPLHNPDLETVVIKATSHDDHHIDSKNVQRVFQWLRTSPLYLKPLVWALSMRMQKTRSWVVALKGLMLIHGIYCCDIPVVNRMGRLPFDLSNFSDGHLSPAKAWSFNGFVRAYFAYLDQRSSFVSSEVKQKKNVSNNKKTEEVEETLMEELEKLQKLQGMIDMLLQIRPKDENLNIGLILEAMDCIIVEVFGVYSKFCNKIAKVLVRIYEVGGKMEANIGLQVLQKASIQVEEISLFFDLCKDIGVLNASQCPKIDRISPEDIQDLERIINGASSKKGCGFVGNDEDNNKAIVVRDCSSTAMVSQQEESENGLMTVITQQWEVFDDDHVIVGAKGMDNVSNNGAKDIIGTTTNPFEESYSIVPYVPVHHHQALPDLISW*

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