Glyma08g09740 - SoyBase

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Report for Sequence Feature Glyma08g09740

Feature Type:	gene_model
Chromosome:	Gm08
Start:	6951325
stop:	6957325
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g09740

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G01970	AT	Annotation by Michelle Graham. TAIR10: Endomembrane protein 70 protein family \| chr2:452197-454819 REVERSE LENGTH=592	SoyBase	E_val: 0	ISS
GO:0006810	GO-bp	Annotation by Michelle Graham. GO Biological Process: transport	SoyBase	N/A	ISS
GO:0005768	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: endosome	SoyBase	N/A	ISS
GO:0005774	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: vacuolar membrane	SoyBase	N/A	ISS
GO:0005794	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus	SoyBase	N/A	ISS
GO:0005802	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: trans-Golgi network	SoyBase	N/A	ISS
GO:0009505	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plant-type cell wall	SoyBase	N/A	ISS
GO:0009506	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma	SoyBase	N/A	ISS
GO:0016021	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane	SoyBase	N/A	ISS
KOG1277	KOG	Endosomal membrane proteins, EMP70	JGI		ISS
PTHR10766	Panther	TRANSMEMBRANE 9 SUPERFAMILY PROTEIN MEMBER	JGI		ISS
PTHR10766:SF14	Panther	TRANSMEMBRANE 9 SUPERFAMILY PROTEIN MEMBER 1	JGI		ISS
PF02990	PFAM	Endomembrane protein 70	JGI		ISS
UniRef100_B9S7D1	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Transporter, putative n=1 Tax=Ricinus communis RepID=B9S7D1_RICCO	SoyBase	E_val: 0	ISS
UniRef100_I1KRP1	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Papilionoideae RepID=I1KRP1_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma08g09740

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g09740

Paralog	Evidence	Comments
Glyma05g26750	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g09740 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g092100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g09740

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma08g09740

Limit To All Plant Sequences

>Glyma08g09740.2   sequence type=transcript   gene model=Glyma08g09740   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CTTGGTCATTTCCTTAAAAAATTGTAGTGAATAAATTGCTTGCTTGTTGTCCTTGTCTGTTTCTTTTTCTTTATCTATCTGATCTGAATGCGAAGAACGAACGAGAGTGCAGCGCCAGCGGCAATGGGAAGGAGCACTTTGGCTTTGGTTCTCGCGATTCTGATCTCTTTGCAGGGAACCCCCCACGTTAGATCCGATGCCTCCGATCATCGTTACAAGGACGGAGACTCCGTTCCTCTTTACGCCAACAAAGTCGGTCCCTTTCACAACCCCAGTGAAACGTATCGGTACTTTGACCTGCCATTCTGTGTAACAGGTCATGAGAAAGATAAGACTGAAGCCCTCGGTGAGGTGTTAAATGGCGATCGCCTTGTTAGTGCTCCTTATGAACTTAGTTTCAAGAAGGAGAAAGACTCTAAGGTTGTATGCAAGAGGAAGCTCACAAAGGAGCAAGTTGCTCAGTTCCGAGAAGCAGTTAAGAAGGACTATTATTTCCAGATGTACTATGATGACTTGCCGATCTGGGGATTTATTGGGACGGTTGACAAGGAAGGGAAAACTGACCCTAGTGAGTACAAGTATTTTCTTTACAAGCACATTCAGTTCGATATTCATTACAACAAAGATCGAGTCATTGAAATCAGTGCCCGGATGGACCCTCATTCTGTGGTGGACCTGACTGAGGATAAAGATGTAGATGTTGAGTTCGTGTACACTGCAAAATGGAAGGAAACAGAGACTCCTTTTGAGAAGAGAATGGATAAATACTCCCAGTCTTCTTCTTTGCCACATCACTTGGAGATTCACTGGTTCTCAATCATAAATTCCTGTGTAACAGTTCTTCTTTTGACTGGTTTTCTGGCAACCATTCTCATGCGTGTATTGAAGAATGACTTTATGAAGTATGCTCAAGATGAGGAAGCTGCTGATGATCAAGAGGAGACAGGATGGAAGTACATTCATGGGGATGTTTTCCGGTTTCCAAAGTTCAAGTCTTTCTTTTCAGCAGCCCTTGGTTCTGGTACTCAATTATTCACACTTACAATCTTCATTTTTATGCTTGCACTGGTTGGTGTGTTTTATCCATATAACCGAGGCGCTTTATTTACTGCACTGGTGGTCATATATGCTCTCACATCTGGCATCGCTGGCTACACTGCTACTTCCTTCTATATTCAACTTGAAGGGACTAATTGGGTTAGGAACTTATTGCTGACAGGATGCCTCTTTTGTGGCCCCCTATTCCTTATGTTCTGTTTCCTTAACACAGTTGCGATTGCTTATAGTGCAACTGCTGCCCTGCCATTTGGCACAATTGTGGTGATTGTCCTAATATGGACATTGGTAACTTCACCATTGCTTGTGTTGGGTGGTATTGCTGGTAAAAATAGCAAAACTGAGTTCCAAGCACCTGTCCGCACTACAAAATATCCCCGAGAGATTCCACCTCTGCCTTGGTACAGGAGTACCATTCCCCAGATGGCAATGGCAGGATTTCTTCCTTTTAGTGCCATCTACATAGAGCTGTACTACATTTTTGCCAGTGTATGGGGCCACAGAATTTATACGATCTACAGCATACTCTTCATTGTCTTCATTATTCTGTTGATTGTCACTGCTTTCATCACTGTGGCTTTGACATACTTCCAACTTGCTGCTGAGGATCATGAATGGTGGTGGAGGTATGCAACTTATCTTATTGCCACCTTCTATAGTTGTTTGAGAGTTGAGTTTGTGTAATGTGATTTTCACTAGAAATAATATTATCTACTCTTATATTAG

Coding sequences of Glyma08g09740

Limit To All Plant Sequences

>Glyma08g09740.1   sequence type=CDS   gene model=Glyma08g09740   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCGAAGAACGAACGAGAGTGCAGCGCCAGCGGCAATGGGAAGGAGCACTTTGGCTTTGGTTCTCGCGATTCTGATCTCTTTGCAGGGAACCCCCCACGTTAGATCCGATGCCTCCGATCATCGTTACAAGGACGGAGACTCCGTTCCTCTTTACGCCAACAAAGTCGGTCCCTTTCACAACCCCAGTGAAACGTATCGGTACTTTGACCTGCCATTCTGTGTAACAGGTCATGAGAAAGATAAGACTGAAGCCCTCGGTGAGGTGTTAAATGGCGATCGCCTTGTTAGTGCTCCTTATGAACTTAGTTTCAAGAAGGAGAAAGACTCTAAGGTTGTATGCAAGAGGAAGCTCACAAAGGAGCAAGTTGCTCAGTTCCGAGAAGCAGTTAAGAAGGACTATTATTTCCAGATGTACTATGATGACTTGCCGATCTGGGGATTTATTGGGACGGTTGACAAGGAAGGGAAAACTGACCCTAGTGAGTACAAGTATTTTCTTTACAAGCACATTCAGTTCGATATTCATTACAACAAAGATCGAGTCATTGAAATCAGTGCCCGGATGGACCCTCATTCTGTGGTGGACCTGACTGAGGATAAAGATGTAGATGTTGAGTTCGTGTACACTGCAAAATGGAAGGAAACAGAGACTCCTTTTGAGAAGAGAATGGATAAATACTCCCAGTCTTCTTCTTTGCCACATCACTTGGAGATTCACTGGTTCTCAATCATAAATTCCTGTGTAACAGTTCTTCTTTTGACTGGTTTTCTGGCAACCATTCTCATGCGTGTATTGAAGAATGACTTTATGAAGTATGCTCAAGATGAGGAAGCTGCTGATGATCAAGAGGAGACAGGATGGAAGTACATTCATGGGGATGTTTTCCGGTTTCCAAAGTTCAAGTCTTTCTTTTCAGCAGCCCTTGGTTCTGGTACTCAATTATTCACACTTACAATCTTCATTTTTATGCTTGCACTGGTTGGTGTGTTTTATCCATATAACCGAGGCGCTTTATTTACTGCACTGGTGGTCATATATGCTCTCACATCTGGCATCGCTGGCTACACTGCTACTTCCTTCTATATTCAACTTGAAGGGACTAATTGGGTTAGGAACTTATTGCTGACAGGATGCCTCTTTTGTGGCCCCCTATTCCTTATGTTCTGTTTCCTTAACACAGTTGCGATTGCTTATAGTGCAACTGCTGCCCTGCCATTTGGCACAATTGTGGTGATTGTCCTAATATGGACATTGGTAACTTCACCATTGCTTGTGTTGGGTGGTATTGCTGGTAAAAATAGCAAAACTGAGTTCCAAGCACCTGTCCGCACTACAAAATATCCCCGAGAGATTCCACCTCTGCCTTGGTACAGGAGTACCATTCCCCAGATGGCAATGGCAGGATTTCTTCCTTTTAGTGCCATCTACATAGAGCTGTACTACATTTTTGCCAGTGTATGGGGCCACAGAATTTATACGATCTACAGCATACTCTTCATTGTCTTCATTATTCTGTTGATTGTCACTGCTTTCATCACTGTGGCTTTGACATACTTCCAACTTGCTGCTGAGGATCATGAATGGTGGTGGAGGTCTTTCCTTTGTGGTGGATCAACTGGCTTGTTCATCTACGGCTATTGCTTGTATTACTACTATGCACGATCAGATATGTCTGGTTTTATGCAAACTTCGTTCTTCTTTGGTTACATGGCCTGTATCTGCTATGGCTTCTTCCTCATGCTCGGTAGCGTAGGATTCCGTGCCTCCCTGCTCTTTGTTCGTCACATATACCGGTCCATCAAGTGTGAGTAG

>Glyma08g09740.2   sequence type=CDS   gene model=Glyma08g09740   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCGAAGAACGAACGAGAGTGCAGCGCCAGCGGCAATGGGAAGGAGCACTTTGGCTTTGGTTCTCGCGATTCTGATCTCTTTGCAGGGAACCCCCCACGTTAGATCCGATGCCTCCGATCATCGTTACAAGGACGGAGACTCCGTTCCTCTTTACGCCAACAAAGTCGGTCCCTTTCACAACCCCAGTGAAACGTATCGGTACTTTGACCTGCCATTCTGTGTAACAGGTCATGAGAAAGATAAGACTGAAGCCCTCGGTGAGGTGTTAAATGGCGATCGCCTTGTTAGTGCTCCTTATGAACTTAGTTTCAAGAAGGAGAAAGACTCTAAGGTTGTATGCAAGAGGAAGCTCACAAAGGAGCAAGTTGCTCAGTTCCGAGAAGCAGTTAAGAAGGACTATTATTTCCAGATGTACTATGATGACTTGCCGATCTGGGGATTTATTGGGACGGTTGACAAGGAAGGGAAAACTGACCCTAGTGAGTACAAGTATTTTCTTTACAAGCACATTCAGTTCGATATTCATTACAACAAAGATCGAGTCATTGAAATCAGTGCCCGGATGGACCCTCATTCTGTGGTGGACCTGACTGAGGATAAAGATGTAGATGTTGAGTTCGTGTACACTGCAAAATGGAAGGAAACAGAGACTCCTTTTGAGAAGAGAATGGATAAATACTCCCAGTCTTCTTCTTTGCCACATCACTTGGAGATTCACTGGTTCTCAATCATAAATTCCTGTGTAACAGTTCTTCTTTTGACTGGTTTTCTGGCAACCATTCTCATGCGTGTATTGAAGAATGACTTTATGAAGTATGCTCAAGATGAGGAAGCTGCTGATGATCAAGAGGAGACAGGATGGAAGTACATTCATGGGGATGTTTTCCGGTTTCCAAAGTTCAAGTCTTTCTTTTCAGCAGCCCTTGGTTCTGGTACTCAATTATTCACACTTACAATCTTCATTTTTATGCTTGCACTGGTTGGTGTGTTTTATCCATATAACCGAGGCGCTTTATTTACTGCACTGGTGGTCATATATGCTCTCACATCTGGCATCGCTGGCTACACTGCTACTTCCTTCTATATTCAACTTGAAGGGACTAATTGGGTTAGGAACTTATTGCTGACAGGATGCCTCTTTTGTGGCCCCCTATTCCTTATGTTCTGTTTCCTTAACACAGTTGCGATTGCTTATAGTGCAACTGCTGCCCTGCCATTTGGCACAATTGTGGTGATTGTCCTAATATGGACATTGGTAACTTCACCATTGCTTGTGTTGGGTGGTATTGCTGGTAAAAATAGCAAAACTGAGTTCCAAGCACCTGTCCGCACTACAAAATATCCCCGAGAGATTCCACCTCTGCCTTGGTACAGGAGTACCATTCCCCAGATGGCAATGGCAGGATTTCTTCCTTTTAGTGCCATCTACATAGAGCTGTACTACATTTTTGCCAGTGTATGGGGCCACAGAATTTATACGATCTACAGCATACTCTTCATTGTCTTCATTATTCTGTTGATTGTCACTGCTTTCATCACTGTGGCTTTGACATACTTCCAACTTGCTGCTGAGGATCATGAATGGTGGTGGAGGTATGCAACTTATCTTATTGCCACCTTCTATAGTTGTTTGAGAGTTGAGTTTGTGTAA

Predicted protein sequences of Glyma08g09740

Limit To All Plant Sequences

>Glyma08g09740.1   sequence type=predicted peptide   gene model=Glyma08g09740   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MRRTNESAAPAAMGRSTLALVLAILISLQGTPHVRSDASDHRYKDGDSVPLYANKVGPFHNPSETYRYFDLPFCVTGHEKDKTEALGEVLNGDRLVSAPYELSFKKEKDSKVVCKRKLTKEQVAQFREAVKKDYYFQMYYDDLPIWGFIGTVDKEGKTDPSEYKYFLYKHIQFDIHYNKDRVIEISARMDPHSVVDLTEDKDVDVEFVYTAKWKETETPFEKRMDKYSQSSSLPHHLEIHWFSIINSCVTVLLLTGFLATILMRVLKNDFMKYAQDEEAADDQEETGWKYIHGDVFRFPKFKSFFSAALGSGTQLFTLTIFIFMLALVGVFYPYNRGALFTALVVIYALTSGIAGYTATSFYIQLEGTNWVRNLLLTGCLFCGPLFLMFCFLNTVAIAYSATAALPFGTIVVIVLIWTLVTSPLLVLGGIAGKNSKTEFQAPVRTTKYPREIPPLPWYRSTIPQMAMAGFLPFSAIYIELYYIFASVWGHRIYTIYSILFIVFIILLIVTAFITVALTYFQLAAEDHEWWWRSFLCGGSTGLFIYGYCLYYYYARSDMSGFMQTSFFFGYMACICYGFFLMLGSVGFRASLLFVRHIYRSIKCE*

>Glyma08g09740.2   sequence type=predicted peptide   gene model=Glyma08g09740   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MRRTNESAAPAAMGRSTLALVLAILISLQGTPHVRSDASDHRYKDGDSVPLYANKVGPFHNPSETYRYFDLPFCVTGHEKDKTEALGEVLNGDRLVSAPYELSFKKEKDSKVVCKRKLTKEQVAQFREAVKKDYYFQMYYDDLPIWGFIGTVDKEGKTDPSEYKYFLYKHIQFDIHYNKDRVIEISARMDPHSVVDLTEDKDVDVEFVYTAKWKETETPFEKRMDKYSQSSSLPHHLEIHWFSIINSCVTVLLLTGFLATILMRVLKNDFMKYAQDEEAADDQEETGWKYIHGDVFRFPKFKSFFSAALGSGTQLFTLTIFIFMLALVGVFYPYNRGALFTALVVIYALTSGIAGYTATSFYIQLEGTNWVRNLLLTGCLFCGPLFLMFCFLNTVAIAYSATAALPFGTIVVIVLIWTLVTSPLLVLGGIAGKNSKTEFQAPVRTTKYPREIPPLPWYRSTIPQMAMAGFLPFSAIYIELYYIFASVWGHRIYTIYSILFIVFIILLIVTAFITVALTYFQLAAEDHEWWWRYATYLIATFYSCLRVEFV*

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