SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G01980 | AT | Annotation by Michelle Graham. TAIR10: sodium proton exchanger, putative (NHX7) (SOS1) | chr2:457070-463145 FORWARD LENGTH=1146 | SoyBase | E_val: 0 | ISS |
| GO:0000302 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to reactive oxygen species | SoyBase | N/A | ISS |
| GO:0006812 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cation transport | SoyBase | N/A | ISS |
| GO:0006814 | GO-bp | Annotation by Michelle Graham. GO Biological Process: sodium ion transport | SoyBase | N/A | ISS |
| GO:0006816 | GO-bp | Annotation by Michelle Graham. GO Biological Process: calcium ion transport | SoyBase | N/A | ISS |
| GO:0006869 | GO-bp | Annotation by Michelle Graham. GO Biological Process: lipid transport | SoyBase | N/A | ISS |
| GO:0006891 | GO-bp | Annotation by Michelle Graham. GO Biological Process: intra-Golgi vesicle-mediated transport | SoyBase | N/A | ISS |
| GO:0006979 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to oxidative stress | SoyBase | N/A | ISS |
| GO:0009651 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to salt stress | SoyBase | N/A | ISS |
| GO:0010351 | GO-bp | Annotation by Michelle Graham. GO Biological Process: lithium ion transport | SoyBase | N/A | ISS |
| GO:0016558 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein import into peroxisome matrix | SoyBase | N/A | ISS |
| GO:0035725 | GO-bp | Annotation by Michelle Graham. GO Biological Process: sodium ion transmembrane transport | SoyBase | N/A | ISS |
| GO:0042542 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to hydrogen peroxide | SoyBase | N/A | ISS |
| GO:0055085 | GO-bp | Annotation by Michelle Graham. GO Biological Process: transmembrane transport | SoyBase | N/A | ISS |
| GO:2000377 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of reactive oxygen species metabolic process | SoyBase | N/A | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| GO:0009941 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast envelope | SoyBase | N/A | ISS |
| GO:0005515 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein binding | SoyBase | N/A | ISS |
| GO:0015299 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: solute:hydrogen antiporter activity | SoyBase | N/A | ISS |
| GO:0015385 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: sodium:hydrogen antiporter activity | SoyBase | N/A | ISS |
| KOG1965 | KOG | Sodium/hydrogen exchanger protein | JGI | ISS | |
| PTHR10110 | Panther | SODIUM/HYDROGEN EXCHANGER | JGI | ISS | |
| PTHR10110:SF4 | Panther | SODIUM/HYDROGEN EXCHANGER PLANT | JGI | ISS | |
| PF00027 | PFAM | Cyclic nucleotide-binding domain | JGI | ISS | |
| PF00999 | PFAM | Sodium/hydrogen exchanger family | JGI | ISS | |
| UniRef100_H9CDQ2 | UniRef | Annotation by Michelle Graham. Best UniRef hit: SOS1 n=1 Tax=Glycine max RepID=H9CDQ2_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_H9CDQ2 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: SOS1 n=1 Tax=Glycine max RepID=H9CDQ2_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma08g09730 not represented in the dataset |
Glyma08g09730 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.08g092000 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma08g09730.1 sequence type=CDS gene model=Glyma08g09730 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAGGAAGAACAACAACAACAACACCTTTCTCTTTCCATTTCACTTTCTGTTGTCTCTGCTGCTTCTTCTTCATCAGAGGAGAATTCCAATCCATCAGATGCAGTGATCTTCTTTGGTCTGAGTTTGGCTCTGGGGATTGCTTGTAGGCACCTCTTGCGTGGGACCAGAGTCCCTTATACTGTTGCCTTACTCATTCTTGGCATTGCACTTGGATCCATAGAATATGGTACTCATCATCGGCTGGGAAAGATTGGGGATGGAATTCGTATTTGGTCAGAGATTGATCCAGATCTTCTTTTAGCTGTTTTTCTTCCTGCTCTCCTTTTTGAGAGCTCATTCTTAATGGAAGTTCACCAAATTAAGAGGTGTCTTGCACAAATGATCTTACTAGCTGGCCCTGGTGTTGCGCTTTCTACTGTTTGTCTAGGAGTTGTTTTAAAGCTTACTTTTCCGTACAACTGGAGTTGGAAAACATCACTGTTGCTTGGAGGACTTCTGAGTGCTACTGATCCTGTTGCTGTTGTGGCTTTGTTGAAAGATCTTGGTGCCAGCAAAAAGCTAAGCACGATAATTGAAGGGGAATCCTTGATGAATGATGGGACTGCTATTGTGGTTTATACTCTTTTCTATCGGATGGTTCTTGGAGAGACCTTCAATTGGGTTGCTATAATCAAATTTCTAGCACAAGTCTCACTTGGAGCTGTAGGAATGGGTCTTGCTTTTGGGATTGCATCTGTTTTGTGGCTTGGGTTTATTTTTAATGATACAGTGATTGAGATTGCTCTAACATTTGCTGTTAGCTACATTGCTTATTTCACTGCTCAGGAGGGTTCAGGTGTTTCTGGTGTCTTGACGGTGATGTCTTTGGGAATGTTCTATTCTGCATTTGCAAGAACAGCTTTTAAGGGTGAAAGTCAACAAAGCTTACATCACTTTTGGGAAATGATCGCTTATATTGCTAATACCTTAATTTTCATTTTGAGTGGAGTTGTTATAGCTGAAGGAATACTTGGTGACGAAAATGTTTTCTATCATGGAACATCATGGACCCACCTCTTGCTTCTCTATGCATATGTTCAAGTGTCCCGGTGCATTGTAGTCGGAGCATTATTTCCCTTTCTAAGATATTTTGGATATGGTTTGGATTGGAAAGAAGCTATTATTCTCATCTGGTCAGGACTGCGAGGCGCAGTTGCCTTGGCACTTTCCTTATCAGTTAAGCGTTCGGGTGGCAAATCATCTGAATTGACTCCAGAGACAGGAACACTGTTTGTTTTCTTCACTGGTGGAACTGTGTTTTTAACACTTATAATAAATGGTTCAACCACACAATTCATTTTACACTACCTTGGCATGGATAAATTGTCAGCTGCTAAGAGACGGATCCTTAACTTCACAAAGTATGAAATGTTGAACAAGGCATTGGAGGCTTTTGGTGAACTTGGAGATGATGAGGAGCTTGGGCCTGCTGACTGGCCTACAGTGAAGAGATATATCTCCTGTTTAAATGACATTGAAGGTGAATGTGTTCACCCTCATGGAGCACCTGAAAATGATAGTAACCTAGATCCTATGAATTTGAAAGACATACGAGTACGCCTTCTGAATGGTGTACAAGCTGCTTACTGGGAGATGCTTGATGAAGGAAGAATTTCTCAAACAACAGCTAATATCCTAATGCTATCTGTCGAGGAAGCAGTAGATTTGGCTTCATCTGAGCCTCTATGTGACTGGAAAGGTTTAAAATCTAACGTCCATTTCCCGAATTACTATAAATTTCTACAGTCCAGTATGTTCCCACCGAAGTTAGTTACGTATTTCACCGTGGAAAGGTTGGAATCTGCATGTTATATTTGTGCTGCATTTCTTCGAGCTCACAGAATTGCCCGACAACAATTACATGACTTCATAGGAGACAGTGATATTGCTTCTGCTGTCATCAATGAAAGTGTTGTGGAAGGAGAAGAAGCACGGAAGTTCCTAGAAGATGTTAATGTTACATACCCTCAGGTTTTGCGTGTTGTAAAAACAAGGCAAGCAACATATGCAGTGCTAAATCATTTAATTGAATATGTTGAAAACCTTGAGAAGGCTGGGATATTGGAAGAGAAAGAGATGCTACAACTCCATGATGCTGTTCAGACTGATTTAAAGAAACTACTAAGAAATCCTCCTTTGGTTAAGCTTCCTAAAATAAGTAGTATCCATCCAATGTTGGGTGCTCTCCCATCTTCAGTTCGTGAATCACTTGCAAGTTGTACCAAGGAAATGATGAAATTGCGTGGTTTGACACTGTACAAGGAAGGTGCCAAATCAAATGGTATTTGGTTAATTTCTAATGGAGTGGTGAAGTGGGAAAGCAAGATGATAAGAACCAAGCACTCTTTTAATCCTACATTTACGCATGGGAGCACATTGGGTATTTATGAAGTGTTGACTGGAAGATCATATATCTGTGATGTCGTCACTGATTCCGTGGTATTCTGCATTTTTCTTGAAGCTGATAAGATAAGATCATGTCTCAAAGCAGATCCTTTGACGGAAAAATTCCTGTGGGAGGAAAGTGCTATTTTCCTTTCCAAATTATTGCTTCCTCAGATATTTGAGAAACTGGGTATGCAAGATTTAAGAACTCTTATTGCGGATTCCGAGAGATCTCGAATGACCATATTCATAAGAGGGGAAACAATAGAAATTCCTCATCATTCAGTTGCCCTCTTACTAGAAGGATATGTCAAAACTCAAGGTCGTCAAGAACTGGTAACAGCACCAGCAGCCCTGCTTCCTTCACATGGGAATCTAAGCTTCCAAAATTTGGCAAGTTCAGGTTCTAAGGAAGCTAGTTTTATTCATCAACAAGGATCTAGTTATCTAGTTGAAACTACAGCAAGAGTAATTCTGTTTGACATTCCAGCACCTGAGGCTGATGCTGCTCTTGTTAGAAGGTCAAGTTCACTGTTATCACATGCCGGGGATCATCCTCATAGATCTTTCCGTCGAAAACATAGTGGTCTTATGAGTTGGCCTGAACATTTCTACAAACAAGACCATAAGCAGAGATCTGAAGGAGCTGGGCGACAAACCAATAGTTTATCTGCAAGGGCAATGCAGCTGAGCATTTATGGGAGCATGGTGGACATCCCTCCCCGGAGTAGAAGTTTGTTAACCAATGATGGTAGACCACCTCATAGCTTGTCCTATCCAACCATTGTGTCACATCAAGGTCGTCCTCTTGTTTCAGTCAAATCAGAAGGAGCTGCAACTGCCAAGAAGGTCCATGAGGTCACAAGACATGTTACAAATCCACCTTCACAAAGCACAGAACGAAGACAGCATCACCATGGAGATAATTCAAGTGATGATTCTGGTGCTGAAGAAGAAGATATTATTGTGAGGATTGACTCACCAAGCACGCTATCTTTTCGCTAG
>Glyma08g09730.1 sequence type=predicted peptide gene model=Glyma08g09730 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MEEEQQQQHLSLSISLSVVSAASSSSEENSNPSDAVIFFGLSLALGIACRHLLRGTRVPYTVALLILGIALGSIEYGTHHRLGKIGDGIRIWSEIDPDLLLAVFLPALLFESSFLMEVHQIKRCLAQMILLAGPGVALSTVCLGVVLKLTFPYNWSWKTSLLLGGLLSATDPVAVVALLKDLGASKKLSTIIEGESLMNDGTAIVVYTLFYRMVLGETFNWVAIIKFLAQVSLGAVGMGLAFGIASVLWLGFIFNDTVIEIALTFAVSYIAYFTAQEGSGVSGVLTVMSLGMFYSAFARTAFKGESQQSLHHFWEMIAYIANTLIFILSGVVIAEGILGDENVFYHGTSWTHLLLLYAYVQVSRCIVVGALFPFLRYFGYGLDWKEAIILIWSGLRGAVALALSLSVKRSGGKSSELTPETGTLFVFFTGGTVFLTLIINGSTTQFILHYLGMDKLSAAKRRILNFTKYEMLNKALEAFGELGDDEELGPADWPTVKRYISCLNDIEGECVHPHGAPENDSNLDPMNLKDIRVRLLNGVQAAYWEMLDEGRISQTTANILMLSVEEAVDLASSEPLCDWKGLKSNVHFPNYYKFLQSSMFPPKLVTYFTVERLESACYICAAFLRAHRIARQQLHDFIGDSDIASAVINESVVEGEEARKFLEDVNVTYPQVLRVVKTRQATYAVLNHLIEYVENLEKAGILEEKEMLQLHDAVQTDLKKLLRNPPLVKLPKISSIHPMLGALPSSVRESLASCTKEMMKLRGLTLYKEGAKSNGIWLISNGVVKWESKMIRTKHSFNPTFTHGSTLGIYEVLTGRSYICDVVTDSVVFCIFLEADKIRSCLKADPLTEKFLWEESAIFLSKLLLPQIFEKLGMQDLRTLIADSERSRMTIFIRGETIEIPHHSVALLLEGYVKTQGRQELVTAPAALLPSHGNLSFQNLASSGSKEASFIHQQGSSYLVETTARVILFDIPAPEADAALVRRSSSLLSHAGDHPHRSFRRKHSGLMSWPEHFYKQDHKQRSEGAGRQTNSLSARAMQLSIYGSMVDIPPRSRSLLTNDGRPPHSLSYPTIVSHQGRPLVSVKSEGAATAKKVHEVTRHVTNPPSQSTERRQHHHGDNSSDDSGAEEEDIIVRIDSPSTLSFR*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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