Glyma08g09700 - SoyBase

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Report for Sequence Feature Glyma08g09700

Feature Type:	gene_model
Chromosome:	Gm08
Start:	6893549
stop:	6896920
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g09700

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G19640	AT	Annotation by Michelle Graham. TAIR10: ASH1-related protein 2 \| chr2:8491401-8492597 FORWARD LENGTH=398	SoyBase	E_val: 2.00E-134	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
PTHR12197	Panther	SET AND MYND DOMAIN CONTAINING	JGI		ISS
PTHR12197:SF90	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF00856	PFAM	SET domain	JGI		ISS
UniRef100_B9GMX2	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: SET domain protein n=1 Tax=Populus trichocarpa RepID=B9GMX2_POPTR	SoyBase	E_val: 5.00E-154	ISS
UniRef100_I1KRN7	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KRN7_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma08g09700

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g09700

Paralog	Evidence	Comments
Glyma05g26700	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g09700 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g091700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g09700

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma08g09700

Limit To All Plant Sequences

>Glyma08g09700.3   sequence type=transcript   gene model=Glyma08g09700   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CTTCTTTGAAACTTTGTGAAACTGAGTTTCATTTTTCAACCATTCTTATATTGATTTTTGTGTTGGAAGCAGCTCGAATTGTGAGTGACGGCTGTTTTGATTGTTGATTGCTTTGAATCACTGAGATAACAGGGAGTAGGAGTGCTTGTTCTTGTTGTATTGTGTGTACAAAACCTGAGGTTATTCTATTCAAGTTGTCTTTGGATGTCAGTCATGTGCAGCAAGAAAATATAGCCAAAAAATTCATTGGTGTTGGAGATTCTGTAGAATTTGACAAAGGTGTAGCCTGTCCAAGGTTACCTATTTAATTTTGGGTTGGAAATTTGAAGATACATAAAAATGTCAATGGCTGCTCCAAGTTCCCTATTGAAGGTGGAGGAAATACAAGGAAGAGGGAGGGGAATGGTTGCATCTCAGCCTCTTAAAGCTGGTCAAATTGTCCTCAGAGACTCTCCCATTCTGCTGTATTCGGCTTTGCCCTTGGTCAGACAGTCTCTGTCATCCTCCTCCTCCTCTGCCTCCACTTCCTGCTTCTGTGATCACTGCTTCAGAATCTTGTCTCCTTCTTTACAGGGAGATTCTTCATCATCCACAGTTTTGTGCCCCAATTGTCGCCACCATTGTTTCTGCAATTCAAATTGTCTTTCAAATGCACTGAACTCCTCCCATTCTTCTTGGGTATGTCAAGCATTATCTCATCTTAGAGCCAATTCTCTACTGCTTGAACAGCCCCTTGAGCACCAAGTCCAAGTTAATTTTCTTGTTGCTGCCTACAATCTTGCCAATATCTCCCCTTCAGATTTTCAAATTATGCTTTCTCTTCAGGGTTCTCCTGATGATTCCACCATTGCTGCAGCTCAGTTCCTACACCCCCTTATTTCATCCCTCTGCTCACTTGCTCTCATTGGCCCTCAGAATGGATTTTCTTTAGAACTCACGTCTGCTATTCTTGCCAAGGACAAGCTCAATGCCTTCGGCATAATGCAGCCATTCTCTGAACATGATGACCAGAGGTCCGTCAGAGCTTATGGTATTTACCCCTATGCCTCCTTTTTTAACCACGATTGCCTTCCCAATGCCTGCAGATTTGATTATGTGGATGCTAATCCTTCTGATGACAGCCATAATACTGACTTTATTATTAGGATGATTCATGATGTTCCCCAAGGTAGGGAGATCTGTTTGAGTTATTTCCCTGTGAATGAAAAATATTCTAGTAGGCAGAAGAGACTGATTGAAGATTATGGCTTCACCTGTAATTGTGATCGATGTAATGTGGAGTCAAATTGGTCAGATAATGATAGTGTTGAAGATAATGCTGAGGAAGAAGAGGAGGTTATGGATGAGGACCAATGTGAAACTATGGCAGCATCAGACACTGATGATCATCCCCATGAAGATAATAACGATTTCCCTCATGCTTATTTCTTTTTAAAATACATGTGTGATAGAACAAATTGCTGGGGAACTTTAGCTCCTTTACCTCCACAAGGTGATACTCCATGTAATGTCATGGAATGCAATGTCTGTGGCAAATTGAAGAGTGACAATACCTTTGATATTGATGAAGGGCAAGATGAAGTTTCCATGGAGGACTAAGTCGCTAGGATGCTACTTTAAAAACATTGGTCGTACTGTTACAATTGAAGAACTCATTTTGGGGGGCTGAAACCTGTTCTTCAACTTCTGAAGCCTTATTCATGGACCTTTTAATGCATGGTTTTGTTAGTAGATAAAGGGTACAGATATGATGAAATTGGTTACCAAGGAAAAAGAATGATTAGTCTTTCTGGCCATATGGATACTCAGAATCAGACTGATTTTTTTTAAAACTGTTTTGATAGTTATTTTTCATTTTTGGTTTTAAGTATGTTTTGAACTCTTGATGTTATCGAATTACTGCCAAACCATCAATTTTGAGTCTGTGTTCAAGTTACTATGTCTTAAGTGAAAGATAATGCACAATGCCCAATGATCAGATTAAGTGAAGGAATGAAGAATAGGAAGAGCTTTTGATCTATATGGGATGATAAAGAATTGGAGTCCATGCCATGCCAAAATAAGCAACCCTCATGTTAAATAATCGGTTTAATTATTGGTTTAATAGGCAATTCAAATGGAAAG

>Glyma08g09700.4   sequence type=transcript   gene model=Glyma08g09700   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TTTTATCTCTTCTTTGTTTTGCTGTGTAGTTTCATTTTTCAACCATTCTTATATTGATTTTTGTGTTGGAAGCAGCTCGAATTCTGTTTTGATTGTTGATTGCTTTGAATCACTGAGATAACAGGGAGTAGGAGTGCTTGTTCTTGTTGTATTGTGTGTACAAAACCTGAGGTTATTCTATTCAAGTTGTCTTTGGATGTCAGTCATGTGCAGCAAGAAAATATAGCCAAAAAATTCATTGGTGTTGGAGATTCTGTAGAATTTGACAAAGGTGTAGCCTGTCCAAGGTTACCTATTTAATTTTGGGTTGGAAATTTGAAGATACATAAAAATGTCAATGGCTGCTCCAAGTTCCCTATTGAAGGTGGAGGAAATACAAGGAAGAGGGAGGGGAATGGTTGCATCTCAGCCTCTTAAAGCTGGTCAAATTGTCCTCAGAGACTCTCCCATTCTGCTGTATTCGGCTTTGCCCTTGGTCAGACAGTCTCTGTCATCCTCCTCCTCCTCTGCCTCCACTTCCTGCTTCTGTGATCACTGCTTCAGAATCTTGTCTCCTTCTTTACAGGGAGATTCTTCATCATCCACAGTTTTGTGCCCCAATTGTCGCCACCATTGTTTCTGCAATTCAAATTGTCTTTCAAATGCACTGAACTCCTCCCATTCTTCTTGGGTATGTCAAGCATTATCTCATCTTAGAGCCAATTCTCTACTGCTTGAACAGCCCCTTGAGCACCAAGTCCAAGTTAATTTTCTTGTTGCTGCCTACAATCTTGCCAATATCTCCCCTTCAGATTTTCAAATTATGCTTTCTCTTCAGGGTTCTCCTGATGATTCCACCATTGCTGCAGCTCAGTTCCTACACCCCCTTATTTCATCCCTCTGCTCACTTGCTCTCATTGGCCCTCAGAATGGATTTTCTTTAGAACTCACGTCTGCTATTCTTGCCAAGGACAAGCTCAATGCCTTCGGCATAATGCAGCCATTCTCTGAACATGATGACCAGAGGTCCGTCAGAGCTTATGGTATTTACCCCTATGCCTCCTTTTTTAACCACGATTGCCTTCCCAATGCCTGCAGATTTGATTATGTGGATGCTAATCCTTCTGATGACAGCCATAATACTGACTTTATTATTAGGATGATTCATGATGTTCCCCAAGGTAGGGAGATCTGTTTGAGTTATTTCCCTGTGAATGAAAAATATTCTAGTAGGCAGAAGAGACTGATTGAAGATTATGGCTTCACCTGTAATTGTGATCGATGTAATGTGGAGTCAAATTGGTCAGATAATGATAGTGTTGAAGATAATGCTGAGGAAGAAGAGGAGGTTATGGATGAGGACCAATGTGAAACTATGGCAGCATCAGACACTGATGATCATCCCCATGAAGATAATAACGATTTCCCTCATGCTTATTTCTTTTTAAAATACATGTGTGATAGAACAAATTGCTGGGGAACTTTAGCTCCTTTACCTCCACAAGGTGATACTCCATGTAATGTCATGGAATGCAATGTCTGTGGCAAATTGAAGAGTGACAATACCTTTGATATTGATGAAGGGCAAGATGAAGTTTCCATGGAGGACTAAGTCGCTAGGATGCTACTTTAAAAACATTGGTCGTACTGTTACAATTGAAGAACTCATTTTGGGGGGCTGAAACCTGTTCTTCAACTTCTGAAGCCTTATTCATGGACCTTTTAATGCATGGTTTTGTTAGTAGATAAAGGGTACAGATATGATGAAATTGGTTACCAAGGAAAAAGAATGATTAGTCTTTCTGGCCATATGGATACTCAGAATCAGACTGATTTTTTTTAAAACTGTTTTGATAGTTATTTTTCATTTTTGGTTTTAAGTATGTTTTGAACTCTTGATGTTATCGAATTACTGCCAAACCATCAATTTTGAGTCTGTGTTCAAGTTACTATGTCTTAAGTGAAAGATAATGCACAATGCCCAATGATCAGATTAAGTGAAGGAATGAAGAATAGGAAGAGCTTTTGATCTATATGGGATGATAAAGAATTGGAGTCCATGCCATGCCAAAATAAGCAACCCTCATGTTAAATAATCGGTTTAATTATTGGTTTAATAGGCAATTCAAATGGAAAG

Coding sequences of Glyma08g09700

Limit To All Plant Sequences

>Glyma08g09700.2   sequence type=CDS   gene model=Glyma08g09700   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCAATGGCTGCTCCAAGTTCCCTATTGAAGGTGGAGGAAATACAAGGAAGAGGGAGGGGAATGGTTGCATCTCAGCCTCTTAAAGCTGGTCAAATTGTCCTCAGAGACTCTCCCATTCTGCTGTATTCGGCTTTGCCCTTGGTCAGACAGTCTCTGTCATCCTCCTCCTCCTCTGCCTCCACTTCCTGCTTCTGTGATCACTGCTTCAGAATCTTGTCTCCTTCTTTACAGGGAGATTCTTCATCATCCACAGTTTTGTGCCCCAATTGTCGCCACCATTGTTTCTGCAATTCAAATTGTCTTTCAAATGCACTGAACTCCTCCCATTCTTCTTGGGTATGTCAAGCATTATCTCATCTTAGAGCCAATTCTCTACTGCTTGAACAGCCCCTTGAGCACCAAGTCCAAGTTAATTTTCTTGTTGCTGCCTACAATCTTGCCAATATCTCCCCTTCAGATTTTCAAATTATGCTTTCTCTTCAGGGTTCTCCTGATGATTCCACCATTGCTGCAGCTCAGTTCCTACACCCCCTTATTTCATCCCTCTGCTCACTTGCTCTCATTGGCCCTCAGAATGGATTTTCTTTAGAACTCACGTCTGCTATTCTTGCCAAGGACAAGCTCAATGCCTTCGGCATAATGCAGCCATTCTCTGAACATGATGACCAGAGGTCCGTCAGAGCTTATGGTATTTACCCCTATGCCTCCTTTTTTAACCACGATTGCCTTCCCAATGCCTGCAGATTTGATTATGTGGATGCTAATCCTTCTGATGACAGCCATAATACTGACTTTATTATTAGGATGATTCATGATGTTCCCCAAGGTAGGGAGATCTGTTTGAGTTATTTCCCTGTGAATGAAAAATATTCTAGTAGGCAGAAGAGACTGATTGAAGATTATGGCTTCACCTGTAATTGTGATCGATGTAATGTGGAGTCAAATTGGTCAGATAATGATAGTGTTGAAGATAATGCTGAGGAAGAAGAGGAGGTTATGGATGAGGACCAATGTGAAACTATGGCAGCATCAGACACTGATGATCATCCCCATGAAGATAATAACGATTTCCCTCATGCTTATTTCTTTTTAAAATACATGTGTGATAGAACAAATTGCTGGGGAACTTTAGCTCCTTTACCTCCACAAGGTGATACTCCATGTAATGTCATGGAATGCAATGTCTGTGGCAAATTGAAGAGTGACAATACCTTTGATATTGATGAAGGGCAAGATGAAGTTTCCATGGAGGACTAA

>Glyma08g09700.3   sequence type=CDS   gene model=Glyma08g09700   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCAATGGCTGCTCCAAGTTCCCTATTGAAGGTGGAGGAAATACAAGGAAGAGGGAGGGGAATGGTTGCATCTCAGCCTCTTAAAGCTGGTCAAATTGTCCTCAGAGACTCTCCCATTCTGCTGTATTCGGCTTTGCCCTTGGTCAGACAGTCTCTGTCATCCTCCTCCTCCTCTGCCTCCACTTCCTGCTTCTGTGATCACTGCTTCAGAATCTTGTCTCCTTCTTTACAGGGAGATTCTTCATCATCCACAGTTTTGTGCCCCAATTGTCGCCACCATTGTTTCTGCAATTCAAATTGTCTTTCAAATGCACTGAACTCCTCCCATTCTTCTTGGGTATGTCAAGCATTATCTCATCTTAGAGCCAATTCTCTACTGCTTGAACAGCCCCTTGAGCACCAAGTCCAAGTTAATTTTCTTGTTGCTGCCTACAATCTTGCCAATATCTCCCCTTCAGATTTTCAAATTATGCTTTCTCTTCAGGGTTCTCCTGATGATTCCACCATTGCTGCAGCTCAGTTCCTACACCCCCTTATTTCATCCCTCTGCTCACTTGCTCTCATTGGCCCTCAGAATGGATTTTCTTTAGAACTCACGTCTGCTATTCTTGCCAAGGACAAGCTCAATGCCTTCGGCATAATGCAGCCATTCTCTGAACATGATGACCAGAGGTCCGTCAGAGCTTATGGTATTTACCCCTATGCCTCCTTTTTTAACCACGATTGCCTTCCCAATGCCTGCAGATTTGATTATGTGGATGCTAATCCTTCTGATGACAGCCATAATACTGACTTTATTATTAGGATGATTCATGATGTTCCCCAAGGTAGGGAGATCTGTTTGAGTTATTTCCCTGTGAATGAAAAATATTCTAGTAGGCAGAAGAGACTGATTGAAGATTATGGCTTCACCTGTAATTGTGATCGATGTAATGTGGAGTCAAATTGGTCAGATAATGATAGTGTTGAAGATAATGCTGAGGAAGAAGAGGAGGTTATGGATGAGGACCAATGTGAAACTATGGCAGCATCAGACACTGATGATCATCCCCATGAAGATAATAACGATTTCCCTCATGCTTATTTCTTTTTAAAATACATGTGTGATAGAACAAATTGCTGGGGAACTTTAGCTCCTTTACCTCCACAAGGTGATACTCCATGTAATGTCATGGAATGCAATGTCTGTGGCAAATTGAAGAGTGACAATACCTTTGATATTGATGAAGGGCAAGATGAAGTTTCCATGGAGGACTAA

>Glyma08g09700.4   sequence type=CDS   gene model=Glyma08g09700   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCAATGGCTGCTCCAAGTTCCCTATTGAAGGTGGAGGAAATACAAGGAAGAGGGAGGGGAATGGTTGCATCTCAGCCTCTTAAAGCTGGTCAAATTGTCCTCAGAGACTCTCCCATTCTGCTGTATTCGGCTTTGCCCTTGGTCAGACAGTCTCTGTCATCCTCCTCCTCCTCTGCCTCCACTTCCTGCTTCTGTGATCACTGCTTCAGAATCTTGTCTCCTTCTTTACAGGGAGATTCTTCATCATCCACAGTTTTGTGCCCCAATTGTCGCCACCATTGTTTCTGCAATTCAAATTGTCTTTCAAATGCACTGAACTCCTCCCATTCTTCTTGGGTATGTCAAGCATTATCTCATCTTAGAGCCAATTCTCTACTGCTTGAACAGCCCCTTGAGCACCAAGTCCAAGTTAATTTTCTTGTTGCTGCCTACAATCTTGCCAATATCTCCCCTTCAGATTTTCAAATTATGCTTTCTCTTCAGGGTTCTCCTGATGATTCCACCATTGCTGCAGCTCAGTTCCTACACCCCCTTATTTCATCCCTCTGCTCACTTGCTCTCATTGGCCCTCAGAATGGATTTTCTTTAGAACTCACGTCTGCTATTCTTGCCAAGGACAAGCTCAATGCCTTCGGCATAATGCAGCCATTCTCTGAACATGATGACCAGAGGTCCGTCAGAGCTTATGGTATTTACCCCTATGCCTCCTTTTTTAACCACGATTGCCTTCCCAATGCCTGCAGATTTGATTATGTGGATGCTAATCCTTCTGATGACAGCCATAATACTGACTTTATTATTAGGATGATTCATGATGTTCCCCAAGGTAGGGAGATCTGTTTGAGTTATTTCCCTGTGAATGAAAAATATTCTAGTAGGCAGAAGAGACTGATTGAAGATTATGGCTTCACCTGTAATTGTGATCGATGTAATGTGGAGTCAAATTGGTCAGATAATGATAGTGTTGAAGATAATGCTGAGGAAGAAGAGGAGGTTATGGATGAGGACCAATGTGAAACTATGGCAGCATCAGACACTGATGATCATCCCCATGAAGATAATAACGATTTCCCTCATGCTTATTTCTTTTTAAAATACATGTGTGATAGAACAAATTGCTGGGGAACTTTAGCTCCTTTACCTCCACAAGGTGATACTCCATGTAATGTCATGGAATGCAATGTCTGTGGCAAATTGAAGAGTGACAATACCTTTGATATTGATGAAGGGCAAGATGAAGTTTCCATGGAGGACTAA

Predicted protein sequences of Glyma08g09700

Limit To All Plant Sequences

>Glyma08g09700.2   sequence type=predicted peptide   gene model=Glyma08g09700   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSMAAPSSLLKVEEIQGRGRGMVASQPLKAGQIVLRDSPILLYSALPLVRQSLSSSSSSASTSCFCDHCFRILSPSLQGDSSSSTVLCPNCRHHCFCNSNCLSNALNSSHSSWVCQALSHLRANSLLLEQPLEHQVQVNFLVAAYNLANISPSDFQIMLSLQGSPDDSTIAAAQFLHPLISSLCSLALIGPQNGFSLELTSAILAKDKLNAFGIMQPFSEHDDQRSVRAYGIYPYASFFNHDCLPNACRFDYVDANPSDDSHNTDFIIRMIHDVPQGREICLSYFPVNEKYSSRQKRLIEDYGFTCNCDRCNVESNWSDNDSVEDNAEEEEEVMDEDQCETMAASDTDDHPHEDNNDFPHAYFFLKYMCDRTNCWGTLAPLPPQGDTPCNVMECNVCGKLKSDNTFDIDEGQDEVSMED*

>Glyma08g09700.3   sequence type=predicted peptide   gene model=Glyma08g09700   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSMAAPSSLLKVEEIQGRGRGMVASQPLKAGQIVLRDSPILLYSALPLVRQSLSSSSSSASTSCFCDHCFRILSPSLQGDSSSSTVLCPNCRHHCFCNSNCLSNALNSSHSSWVCQALSHLRANSLLLEQPLEHQVQVNFLVAAYNLANISPSDFQIMLSLQGSPDDSTIAAAQFLHPLISSLCSLALIGPQNGFSLELTSAILAKDKLNAFGIMQPFSEHDDQRSVRAYGIYPYASFFNHDCLPNACRFDYVDANPSDDSHNTDFIIRMIHDVPQGREICLSYFPVNEKYSSRQKRLIEDYGFTCNCDRCNVESNWSDNDSVEDNAEEEEEVMDEDQCETMAASDTDDHPHEDNNDFPHAYFFLKYMCDRTNCWGTLAPLPPQGDTPCNVMECNVCGKLKSDNTFDIDEGQDEVSMED*

>Glyma08g09700.4   sequence type=predicted peptide   gene model=Glyma08g09700   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSMAAPSSLLKVEEIQGRGRGMVASQPLKAGQIVLRDSPILLYSALPLVRQSLSSSSSSASTSCFCDHCFRILSPSLQGDSSSSTVLCPNCRHHCFCNSNCLSNALNSSHSSWVCQALSHLRANSLLLEQPLEHQVQVNFLVAAYNLANISPSDFQIMLSLQGSPDDSTIAAAQFLHPLISSLCSLALIGPQNGFSLELTSAILAKDKLNAFGIMQPFSEHDDQRSVRAYGIYPYASFFNHDCLPNACRFDYVDANPSDDSHNTDFIIRMIHDVPQGREICLSYFPVNEKYSSRQKRLIEDYGFTCNCDRCNVESNWSDNDSVEDNAEEEEEVMDEDQCETMAASDTDDHPHEDNNDFPHAYFFLKYMCDRTNCWGTLAPLPPQGDTPCNVMECNVCGKLKSDNTFDIDEGQDEVSMED*

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